Wall clock time and date at job start Tue Mar 31 2020 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99727 * 2 1 4 4 H 1.48501 * 109.47297 * 240.00258 * 3 2 1 5 5 H 1.48501 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46594 * 120.00460 * 3 2 1 7 7 C 1.38808 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00324 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99971 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46994 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47102 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47105 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99763 * 180.02562 * 13 12 11 15 15 O 1.21530 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.48027 * 119.99922 * 180.02562 * 14 13 12 17 17 N 1.32790 * 119.72103 * 0.02562 * 16 14 13 18 18 C 1.31429 * 121.66539 * 179.97438 * 17 16 14 19 19 C 1.38805 * 120.92042 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 120.32526 * 180.02562 * 19 18 17 21 21 C 1.38657 * 119.34455 * 0.02562 * 19 18 17 22 22 C 1.38729 * 118.46721 * 359.97438 * 21 19 18 23 23 Cl 1.73605 * 120.47783 * 179.97438 * 22 21 19 24 24 H 0.97005 * 120.00430 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99850 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47151 * 59.99821 * 10 9 7 27 27 H 1.09004 * 109.46858 * 299.99633 * 10 9 7 28 28 H 1.08998 * 109.47127 * 60.00040 * 11 10 9 29 29 H 1.08996 * 109.47359 * 299.99925 * 11 10 9 30 30 H 1.08998 * 109.46749 * 60.00234 * 12 11 10 31 31 H 1.08996 * 109.47300 * 300.00386 * 12 11 10 32 32 H 0.96998 * 120.00271 * 0.02562 * 13 12 11 33 33 H 1.08008 * 119.53924 * 180.28079 * 18 17 16 34 34 H 1.08001 * 120.76525 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8196 0.0001 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2582 0.0007 14 6 1.3262 -8.5289 0.0009 15 8 2.5211 -8.7509 -0.0004 16 6 0.3643 -9.6540 0.0016 17 7 -0.9400 -9.4050 0.0015 18 6 -1.8275 -10.3745 0.0015 19 6 -1.4307 -11.7046 0.0012 20 17 -2.6162 -12.9729 0.0007 21 6 -0.0783 -12.0103 0.0014 22 6 0.8356 -10.9666 0.0013 23 17 2.5413 -11.2897 0.0021 24 1 -0.4851 0.8401 0.0004 25 1 0.3555 -2.3880 0.0002 26 1 2.6848 -3.7145 0.8894 27 1 2.6847 -3.7145 -0.8906 28 1 0.4369 -4.7621 -0.8896 29 1 0.4376 -4.7617 0.8903 30 1 2.4562 -6.2025 0.8890 31 1 2.4550 -6.2024 -0.8909 32 1 -0.0767 -7.0810 0.0014 33 1 -2.8801 -10.1328 -0.0032 34 1 0.2560 -13.0373 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169178632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:28 Heat of formation + Delta-G solvation = -19.290790 kcal Electronic energy + Delta-G solvation = -20306.745432 eV Core-core repulsion = 16712.058983 eV Total energy + Delta-G solvation = -3594.686449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94025 -40.22859 -37.95776 -37.74025 -37.47765 -35.94543 -34.05185 -33.52129 -32.49483 -31.11534 -27.34492 -25.85947 -25.01975 -24.13582 -22.57058 -21.91530 -19.59207 -18.98445 -18.51551 -17.94279 -17.00167 -16.98074 -16.54574 -16.31675 -16.16739 -15.47950 -15.26950 -15.17152 -14.92713 -14.48759 -14.07484 -13.89022 -13.42117 -13.29970 -13.04523 -12.80139 -12.77703 -12.55839 -12.47357 -12.33332 -12.07007 -12.04589 -11.77705 -11.41098 -10.92568 -10.88861 -10.66090 -10.31419 -10.01639 -9.00821 -7.95335 -5.24634 -0.92736 -0.33201 0.54249 0.96274 1.43689 1.48347 1.51623 1.57705 1.88030 2.39514 2.56877 2.85633 3.30779 3.38263 3.41681 3.58212 3.74955 3.77359 4.09436 4.25805 4.30331 4.46250 4.54856 4.72561 4.74229 4.87290 4.92594 5.25402 5.32780 5.36065 5.49690 6.14199 6.27262 6.46847 7.02013 7.33526 8.08654 8.32184 9.28017 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002112 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.651946 B =13255.008934 C =14371.912275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.119 4.119 12 C 0.133 3.867 13 N -0.698 5.698 14 C 0.558 3.442 15 O -0.539 6.539 16 C 0.076 3.924 17 N -0.438 5.438 18 C 0.121 3.879 19 C -0.053 4.053 20 Cl -0.017 7.017 21 C -0.060 4.060 22 C -0.038 4.038 23 Cl -0.014 7.014 24 H 0.252 0.748 25 H 0.375 0.625 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.418 0.582 33 H 0.209 0.791 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -31.803 0.002 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.391 5.391 10 C 0.026 3.974 11 C -0.158 4.158 12 C 0.010 3.990 13 N -0.350 5.350 14 C 0.342 3.658 15 O -0.416 6.416 16 C -0.062 4.062 17 N -0.149 5.149 18 C -0.040 4.040 19 C -0.082 4.082 20 Cl 0.012 6.988 21 C -0.086 4.086 22 C -0.069 4.069 23 Cl 0.015 6.985 24 H 0.061 0.939 25 H 0.207 0.793 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.255 0.745 33 H 0.226 0.774 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.513 -31.079 -0.001 31.405 hybrid contribution -0.081 0.180 0.003 0.197 sum -4.594 -30.900 0.003 31.239 Atomic orbital electron populations 1.69803 1.06572 1.26263 1.59315 1.25603 0.96489 1.01209 1.03561 0.85185 0.77205 0.78978 0.78226 1.20354 1.21997 1.20363 1.19620 0.91584 0.85399 1.41550 0.90643 1.42550 1.05744 1.01190 1.89570 1.20676 0.94004 0.84601 0.98131 1.21705 0.98553 0.92256 1.03236 1.21208 0.91428 0.83797 1.02615 1.45806 1.11866 1.04594 1.72688 1.17927 0.87228 0.83021 0.77627 1.90884 1.15954 1.84553 1.50178 1.21028 0.91379 0.92099 1.01724 1.67868 1.00245 1.36348 1.10445 1.23506 1.01441 0.85769 0.93292 1.22329 0.91120 0.92121 1.02658 1.98443 1.54940 1.49150 1.96218 1.21748 0.90018 1.01051 0.95831 1.21993 0.88922 0.93658 1.02296 1.98455 1.08977 1.95139 1.95891 0.93896 0.79264 0.95825 0.95809 0.90869 0.90863 0.91170 0.91157 0.74477 0.77410 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -38.23 5.60 -343.45 -1.92 -40.15 16 10 C 0.15 6.01 6.26 86.38 0.54 6.55 16 11 C -0.12 -3.57 5.44 30.60 0.17 -3.40 16 12 C 0.13 3.51 5.67 86.38 0.49 4.00 16 13 N -0.70 -16.70 5.54 -465.80 -2.58 -19.28 16 14 C 0.56 14.41 7.80 86.84 0.68 15.08 16 15 O -0.54 -16.61 13.94 -3.81 -0.05 -16.66 16 16 C 0.08 1.59 6.75 41.89 0.28 1.87 16 17 N -0.44 -7.62 9.54 -184.75 -1.76 -9.38 16 18 C 0.12 1.39 10.98 84.89 0.93 2.32 16 19 C -0.05 -0.54 6.35 22.51 0.14 -0.40 16 20 Cl -0.02 -0.13 28.99 -2.72 -0.08 -0.21 16 21 C -0.06 -0.71 9.78 22.49 0.22 -0.49 16 22 C -0.04 -0.69 6.37 22.68 0.14 -0.54 16 23 Cl -0.01 -0.29 26.03 -2.72 -0.07 -0.36 16 24 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 25 H 0.38 20.13 7.67 -92.70 -0.71 19.42 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.42 8.74 7.80 -92.71 -0.72 8.02 16 33 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -68.90 331.05 0.47 -68.42 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.27 Total: 20.65 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 4.90 Total: 7.76 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -5.99 Total: -127.94 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.66 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.15 Total: -0.57 kcal Total: -68.90 0.47 -68.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169178632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.134 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds