Wall clock time and date at job start Tue Mar 31 2020 12:10:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86803 * 119.99727 * 2 1
4 4 H 1.48501 * 109.47297 * 240.00258 * 3 2 1
5 5 H 1.48501 * 109.47141 * 0.02562 * 3 2 1
6 6 H 1.48506 * 109.46594 * 120.00460 * 3 2 1
7 7 C 1.38808 * 120.00237 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00324 * 179.97438 * 7 2 1
9 9 N 1.36939 * 119.99832 * 359.97438 * 7 2 1
10 10 C 1.46501 * 119.99971 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.46994 * 179.97438 * 10 9 7
12 12 C 1.53008 * 109.47102 * 179.97438 * 11 10 9
13 13 N 1.46498 * 109.47105 * 179.97438 * 12 11 10
14 14 C 1.34774 * 119.99763 * 180.02562 * 13 12 11
15 15 O 1.21530 * 119.99962 * 359.97438 * 14 13 12
16 16 C 1.48027 * 119.99922 * 180.02562 * 14 13 12
17 17 N 1.32790 * 119.72103 * 0.02562 * 16 14 13
18 18 C 1.31429 * 121.66539 * 179.97438 * 17 16 14
19 19 C 1.38805 * 120.92042 * 359.97438 * 18 17 16
20 20 Cl 1.73601 * 120.32526 * 180.02562 * 19 18 17
21 21 C 1.38657 * 119.34455 * 0.02562 * 19 18 17
22 22 C 1.38729 * 118.46721 * 359.97438 * 21 19 18
23 23 Cl 1.73605 * 120.47783 * 179.97438 * 22 21 19
24 24 H 0.97005 * 120.00430 * 359.97438 * 1 2 3
25 25 H 0.97005 * 119.99850 * 359.97438 * 9 7 2
26 26 H 1.08998 * 109.47151 * 59.99821 * 10 9 7
27 27 H 1.09004 * 109.46858 * 299.99633 * 10 9 7
28 28 H 1.08998 * 109.47127 * 60.00040 * 11 10 9
29 29 H 1.08996 * 109.47359 * 299.99925 * 11 10 9
30 30 H 1.08998 * 109.46749 * 60.00234 * 12 11 10
31 31 H 1.08996 * 109.47300 * 300.00386 * 12 11 10
32 32 H 0.96998 * 120.00271 * 0.02562 * 13 12 11
33 33 H 1.08008 * 119.53924 * 180.28079 * 18 17 16
34 34 H 1.08001 * 120.76525 * 179.97438 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1038 1.6966 -1.2125
5 1 1.2851 2.7465 0.0006
6 1 3.1039 1.6963 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3256 -2.3880 -0.0005
10 6 2.0581 -3.6567 -0.0005
11 6 1.0639 -4.8196 0.0001
12 6 1.8289 -6.1447 -0.0005
13 7 0.8769 -7.2582 0.0007
14 6 1.3262 -8.5289 0.0009
15 8 2.5211 -8.7509 -0.0004
16 6 0.3643 -9.6540 0.0016
17 7 -0.9400 -9.4050 0.0015
18 6 -1.8275 -10.3745 0.0015
19 6 -1.4307 -11.7046 0.0012
20 17 -2.6162 -12.9729 0.0007
21 6 -0.0783 -12.0103 0.0014
22 6 0.8356 -10.9666 0.0013
23 17 2.5413 -11.2897 0.0021
24 1 -0.4851 0.8401 0.0004
25 1 0.3555 -2.3880 0.0002
26 1 2.6848 -3.7145 0.8894
27 1 2.6847 -3.7145 -0.8906
28 1 0.4369 -4.7621 -0.8896
29 1 0.4376 -4.7617 0.8903
30 1 2.4562 -6.2025 0.8890
31 1 2.4550 -6.2024 -0.8909
32 1 -0.0767 -7.0810 0.0014
33 1 -2.8801 -10.1328 -0.0032
34 1 0.2560 -13.0373 0.0016
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169178632.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:28
Heat of formation + Delta-G solvation = -19.290790 kcal
Electronic energy + Delta-G solvation = -20306.745432 eV
Core-core repulsion = 16712.058983 eV
Total energy + Delta-G solvation = -3594.686449 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 317.044 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.94025 -40.22859 -37.95776 -37.74025 -37.47765 -35.94543 -34.05185 -33.52129
-32.49483 -31.11534 -27.34492 -25.85947 -25.01975 -24.13582 -22.57058 -21.91530
-19.59207 -18.98445 -18.51551 -17.94279 -17.00167 -16.98074 -16.54574 -16.31675
-16.16739 -15.47950 -15.26950 -15.17152 -14.92713 -14.48759 -14.07484 -13.89022
-13.42117 -13.29970 -13.04523 -12.80139 -12.77703 -12.55839 -12.47357 -12.33332
-12.07007 -12.04589 -11.77705 -11.41098 -10.92568 -10.88861 -10.66090 -10.31419
-10.01639 -9.00821 -7.95335 -5.24634 -0.92736 -0.33201 0.54249 0.96274
1.43689 1.48347 1.51623 1.57705 1.88030 2.39514 2.56877 2.85633
3.30779 3.38263 3.41681 3.58212 3.74955 3.77359 4.09436 4.25805
4.30331 4.46250 4.54856 4.72561 4.74229 4.87290 4.92594 5.25402
5.32780 5.36065 5.49690 6.14199 6.27262 6.46847 7.02013 7.33526
8.08654 8.32184 9.28017
Molecular weight = 317.04amu
Principal moments of inertia in cm(-1)
A = 0.024499 B = 0.002112 C = 0.001948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1142.651946 B =13255.008934 C =14371.912275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.969 5.969
2 C -0.076 4.076
3 Si 0.976 3.024
4 H -0.277 1.277
5 H -0.294 1.294
6 H -0.278 1.278
7 C -0.250 4.250
8 H 0.076 0.924
9 N -0.748 5.748
10 C 0.153 3.847
11 C -0.119 4.119
12 C 0.133 3.867
13 N -0.698 5.698
14 C 0.558 3.442
15 O -0.539 6.539
16 C 0.076 3.924
17 N -0.438 5.438
18 C 0.121 3.879
19 C -0.053 4.053
20 Cl -0.017 7.017
21 C -0.060 4.060
22 C -0.038 4.038
23 Cl -0.014 7.014
24 H 0.252 0.748
25 H 0.375 0.625
26 H 0.024 0.976
27 H 0.024 0.976
28 H 0.073 0.927
29 H 0.073 0.927
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.418 0.582
33 H 0.209 0.791
34 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.358 -31.803 0.002 32.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.620 5.620
2 C -0.269 4.269
3 Si 0.804 3.196
4 H -0.204 1.204
5 H -0.220 1.220
6 H -0.204 1.204
7 C -0.382 4.382
8 H 0.094 0.906
9 N -0.391 5.391
10 C 0.026 3.974
11 C -0.158 4.158
12 C 0.010 3.990
13 N -0.350 5.350
14 C 0.342 3.658
15 O -0.416 6.416
16 C -0.062 4.062
17 N -0.149 5.149
18 C -0.040 4.040
19 C -0.082 4.082
20 Cl 0.012 6.988
21 C -0.086 4.086
22 C -0.069 4.069
23 Cl 0.015 6.985
24 H 0.061 0.939
25 H 0.207 0.793
26 H 0.042 0.958
27 H 0.042 0.958
28 H 0.091 0.909
29 H 0.091 0.909
30 H 0.088 0.912
31 H 0.088 0.912
32 H 0.255 0.745
33 H 0.226 0.774
34 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges -4.513 -31.079 -0.001 31.405
hybrid contribution -0.081 0.180 0.003 0.197
sum -4.594 -30.900 0.003 31.239
Atomic orbital electron populations
1.69803 1.06572 1.26263 1.59315 1.25603 0.96489 1.01209 1.03561
0.85185 0.77205 0.78978 0.78226 1.20354 1.21997 1.20363 1.19620
0.91584 0.85399 1.41550 0.90643 1.42550 1.05744 1.01190 1.89570
1.20676 0.94004 0.84601 0.98131 1.21705 0.98553 0.92256 1.03236
1.21208 0.91428 0.83797 1.02615 1.45806 1.11866 1.04594 1.72688
1.17927 0.87228 0.83021 0.77627 1.90884 1.15954 1.84553 1.50178
1.21028 0.91379 0.92099 1.01724 1.67868 1.00245 1.36348 1.10445
1.23506 1.01441 0.85769 0.93292 1.22329 0.91120 0.92121 1.02658
1.98443 1.54940 1.49150 1.96218 1.21748 0.90018 1.01051 0.95831
1.21993 0.88922 0.93658 1.02296 1.98455 1.08977 1.95139 1.95891
0.93896 0.79264 0.95825 0.95809 0.90869 0.90863 0.91170 0.91157
0.74477 0.77410 0.79645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16
2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16
3 Si 0.98 46.31 29.55 68.60 2.03 48.34 16
4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16
7 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16
8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16
9 N -0.75 -38.23 5.60 -343.45 -1.92 -40.15 16
10 C 0.15 6.01 6.26 86.38 0.54 6.55 16
11 C -0.12 -3.57 5.44 30.60 0.17 -3.40 16
12 C 0.13 3.51 5.67 86.38 0.49 4.00 16
13 N -0.70 -16.70 5.54 -465.80 -2.58 -19.28 16
14 C 0.56 14.41 7.80 86.84 0.68 15.08 16
15 O -0.54 -16.61 13.94 -3.81 -0.05 -16.66 16
16 C 0.08 1.59 6.75 41.89 0.28 1.87 16
17 N -0.44 -7.62 9.54 -184.75 -1.76 -9.38 16
18 C 0.12 1.39 10.98 84.89 0.93 2.32 16
19 C -0.05 -0.54 6.35 22.51 0.14 -0.40 16
20 Cl -0.02 -0.13 28.99 -2.72 -0.08 -0.21 16
21 C -0.06 -0.71 9.78 22.49 0.22 -0.49 16
22 C -0.04 -0.69 6.37 22.68 0.14 -0.54 16
23 Cl -0.01 -0.29 26.03 -2.72 -0.07 -0.36 16
24 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16
25 H 0.38 20.13 7.67 -92.70 -0.71 19.42 16
26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
27 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16
28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
32 H 0.42 8.74 7.80 -92.71 -0.72 8.02 16
33 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16
34 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16
Total: -1.00 -68.90 331.05 0.47 -68.42
By element:
Atomic # 1 Polarization: 20.92 SS G_CDS: -0.27 Total: 20.65 kcal
Atomic # 6 Polarization: 2.85 SS G_CDS: 4.90 Total: 7.76 kcal
Atomic # 7 Polarization: -121.95 SS G_CDS: -5.99 Total: -127.94 kcal
Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.66 kcal
Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal
Atomic # 17 Polarization: -0.42 SS G_CDS: -0.15 Total: -0.57 kcal
Total: -68.90 0.47 -68.42 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169178632.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.134 kcal
(2) G-P(sol) polarization free energy of solvation -68.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds