Wall clock time and date at job start Tue Mar 31 2020 11:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48506 * 109.46720 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47091 * 299.99611 * 3 2 1 6 6 H 1.48500 * 109.47184 * 60.00260 * 3 2 1 7 7 C 1.37881 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99565 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00058 * 0.02562 * 7 2 1 10 10 O 1.42105 * 106.40147 * 66.45597 * 9 7 2 11 11 O 1.42098 * 106.40116 * 293.53589 * 9 7 2 12 12 N 1.65601 * 107.21753 * 179.97438 * 9 7 2 13 13 C 1.39641 * 119.99812 * 64.99844 * 12 9 7 14 14 C 1.39260 * 119.77960 * 44.99914 * 13 12 9 15 15 C 1.37758 * 120.06119 * 179.71767 * 14 13 12 16 16 C 1.39159 * 119.83551 * 0.26388 * 15 14 13 17 17 C 1.40223 * 120.37591 * 359.97438 * 16 15 14 18 18 C 1.38558 * 119.78156 * 225.23370 * 13 12 9 19 19 O 1.35137 * 108.52410 * 179.97438 * 17 16 15 20 20 C 1.35139 * 111.53541 * 0.02562 * 19 17 16 21 21 C 1.38961 * 132.29452 * 180.02562 * 20 19 17 22 22 C 1.37910 * 120.09440 * 179.97438 * 21 20 19 23 23 C 1.38574 * 120.60225 * 359.97311 * 22 21 20 24 24 C 1.37921 * 120.13134 * 0.02562 * 23 22 21 25 25 C 1.39083 * 119.73329 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99775 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99759 * 245.00171 * 12 9 7 28 28 H 1.08002 * 119.97278 * 0.02562 * 14 13 12 29 29 H 1.08004 * 120.08211 * 180.27643 * 15 14 13 30 30 H 1.08001 * 119.98928 * 0.02562 * 18 13 12 31 31 H 1.08005 * 119.95178 * 359.95687 * 21 20 19 32 32 H 1.08005 * 119.70073 * 179.97438 * 22 21 20 33 33 H 1.07999 * 119.93743 * 179.97438 * 23 22 21 34 34 H 1.08001 * 120.13162 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2495 11 8 0.4510 -2.7950 1.2500 12 7 2.2482 -3.9355 0.0005 13 6 3.0975 -4.1008 1.0966 14 6 2.5795 -4.0428 2.3879 15 6 3.4112 -4.2109 3.4732 16 6 4.7706 -4.4332 3.2759 17 6 5.2992 -4.4877 1.9782 18 6 4.4509 -4.3165 0.8921 19 8 6.6290 -4.7118 2.0653 20 6 7.0318 -4.8130 3.3513 21 6 8.2771 -5.0356 3.9264 22 6 8.4049 -5.0927 5.2983 23 6 7.2991 -4.9293 6.1173 24 6 6.0550 -4.7076 5.5647 25 6 5.9150 -4.6481 4.1822 26 1 -0.4850 0.8401 -0.0004 27 1 2.3170 -4.5325 -0.7608 28 1 1.5240 -3.8709 2.5387 29 1 3.0090 -4.1704 4.4748 30 1 4.8455 -4.3560 -0.1124 31 1 9.1460 -5.1642 3.2980 32 1 9.3758 -5.2664 5.7385 33 1 7.4114 -4.9765 7.1904 34 1 5.1932 -4.5798 6.2030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192971868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:26 Heat of formation + Delta-G solvation = -46.087506 kcal Electronic energy + Delta-G solvation = -23219.530184 eV Core-core repulsion = 19595.865547 eV Total energy + Delta-G solvation = -3623.664637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34074 -38.56438 -37.72741 -35.44063 -34.36030 -34.18882 -33.17032 -31.48668 -30.88044 -29.82675 -27.81949 -26.23182 -23.78623 -23.11344 -22.12978 -20.92575 -19.31422 -18.61928 -17.63698 -17.15832 -16.68769 -16.44918 -16.11793 -15.83254 -15.14694 -14.92492 -14.30901 -14.18344 -13.97199 -13.77527 -13.55709 -13.49099 -12.66337 -12.50005 -12.24979 -12.10863 -11.97551 -11.37650 -11.28151 -11.24507 -10.97502 -10.78315 -10.63507 -10.53617 -10.38116 -10.06011 -9.37541 -9.33107 -9.12721 -8.89798 -8.10880 -7.69454 -6.79912 -5.42808 0.67061 1.04798 1.70595 1.75898 2.08673 2.62306 3.01991 3.10632 3.18912 3.56157 3.93516 3.99139 4.34706 4.48494 4.54564 4.56301 4.71916 4.86484 5.07345 5.13200 5.26825 5.44024 5.49037 5.59802 5.67156 5.70249 5.89808 6.04410 6.18661 6.23819 6.30044 6.33548 6.39941 6.56870 6.59348 6.85993 6.93935 7.23316 7.25931 7.64145 7.88195 8.79990 10.14346 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.003845 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.492786 B = 7280.580863 C = 7823.471824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.135 3.865 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.269 1.269 7 C -1.014 5.014 8 H 0.105 0.895 9 S 2.704 3.296 10 O -0.993 6.993 11 O -0.992 6.992 12 N -1.071 6.071 13 C 0.222 3.778 14 C -0.160 4.160 15 C -0.040 4.040 16 C -0.150 4.150 17 C 0.099 3.901 18 C -0.146 4.146 19 O -0.203 6.203 20 C 0.077 3.923 21 C -0.116 4.116 22 C -0.094 4.094 23 C -0.141 4.141 24 C -0.067 4.067 25 C -0.107 4.107 26 H 0.292 0.708 27 H 0.415 0.585 28 H 0.173 0.827 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.489 -8.992 9.164 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.194 1.194 7 C -1.149 5.149 8 H 0.123 0.877 9 S 2.805 3.195 10 O -0.984 6.984 11 O -0.982 6.982 12 N -0.815 5.815 13 C 0.124 3.876 14 C -0.181 4.181 15 C -0.058 4.058 16 C -0.152 4.152 17 C 0.053 3.947 18 C -0.169 4.169 19 O -0.107 6.107 20 C 0.031 3.969 21 C -0.134 4.134 22 C -0.112 4.112 23 C -0.159 4.159 24 C -0.086 4.086 25 C -0.108 4.108 26 H 0.102 0.898 27 H 0.249 0.751 28 H 0.190 0.810 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.430 -8.961 9.015 17.779 hybrid contribution 1.066 1.020 -0.446 1.541 sum 13.497 -7.942 8.569 17.851 Atomic orbital electron populations 1.69890 1.06738 1.30874 1.39810 1.24730 0.94496 1.00839 0.88299 0.86100 0.80557 0.80137 0.78681 1.18509 1.19478 1.19438 1.30429 1.06225 1.11015 1.67181 0.87660 1.00991 0.72051 0.73252 0.73190 1.93405 1.72365 1.87273 1.45330 1.93303 1.72458 1.87122 1.45288 1.54153 1.53214 1.49439 1.24646 1.16968 0.88003 0.95319 0.87351 1.22037 1.03438 1.02280 0.90317 1.20340 0.89959 0.96170 0.99362 1.19281 0.94145 1.09971 0.91766 1.19144 0.80703 1.00037 0.94843 1.19787 0.90404 1.09620 0.97098 1.84018 1.22611 1.78052 1.26053 1.19586 0.95180 1.00842 0.81277 1.19960 0.93534 1.05131 0.94806 1.20877 0.99178 0.99292 0.91833 1.21007 0.92193 1.02688 1.00037 1.20542 0.98012 0.97808 0.92193 1.19384 0.92216 1.05113 0.94054 0.89753 0.75080 0.80952 0.84884 0.84458 0.85060 0.84858 0.85277 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.03 13.19 55.43 0.73 -23.30 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.40 29.54 -169.99 -5.02 15.37 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -1.01 -27.29 9.68 30.60 0.30 -26.99 16 8 H 0.11 2.66 7.81 -52.49 -0.41 2.25 16 9 S 2.70 68.31 4.94 -107.50 -0.53 67.78 16 10 O -0.99 -27.79 18.02 -57.17 -1.03 -28.82 16 11 O -0.99 -26.62 14.91 -57.17 -0.85 -27.48 16 12 N -1.07 -20.67 5.75 32.40 0.19 -20.48 16 13 C 0.22 4.12 6.20 -83.80 -0.52 3.60 16 14 C -0.16 -2.96 9.16 -39.38 -0.36 -3.32 16 15 C -0.04 -0.63 10.07 -39.41 -0.40 -1.03 16 16 C -0.15 -2.44 6.38 -105.01 -0.67 -3.11 16 17 C 0.10 1.67 7.33 -38.60 -0.28 1.39 16 18 C -0.15 -2.45 9.97 -39.23 -0.39 -2.85 16 19 O -0.20 -3.26 10.58 1.00 0.01 -3.25 16 20 C 0.08 1.11 7.34 -38.59 -0.28 0.83 16 21 C -0.12 -1.27 10.06 -39.43 -0.40 -1.67 16 22 C -0.09 -0.84 10.01 -39.58 -0.40 -1.24 16 23 C -0.14 -1.31 10.04 -39.57 -0.40 -1.70 16 24 C -0.07 -0.77 10.08 -39.38 -0.40 -1.17 16 25 C -0.11 -1.54 6.38 -105.06 -0.67 -2.21 16 26 H 0.29 7.45 8.31 -40.82 -0.34 7.12 16 27 H 0.42 6.58 8.95 -34.47 -0.31 6.27 16 28 H 0.17 3.43 5.55 -52.49 -0.29 3.14 16 29 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 30 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -33.91 315.41 -9.40 -43.31 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -2.68 Total: 8.00 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: -4.96 Total: -35.90 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.92 Total: -43.78 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -1.87 Total: -59.54 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 68.31 SS G_CDS: -0.53 Total: 67.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.91 -9.40 -43.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192971868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.774 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds