Wall clock time and date at job start Tue Mar 31 2020 11:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48506 * 109.46720 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47091 * 299.99611 * 3 2 1 6 6 H 1.48500 * 109.47184 * 60.00260 * 3 2 1 7 7 C 1.37881 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99565 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00058 * 0.02562 * 7 2 1 10 10 O 1.42105 * 106.40147 * 66.45597 * 9 7 2 11 11 O 1.42098 * 106.40116 * 293.53589 * 9 7 2 12 12 N 1.65601 * 107.21753 * 179.97438 * 9 7 2 13 13 C 1.39641 * 119.99812 * 64.99844 * 12 9 7 14 14 C 1.39260 * 119.77960 * 44.99914 * 13 12 9 15 15 C 1.37758 * 120.06119 * 179.71767 * 14 13 12 16 16 C 1.39159 * 119.83551 * 0.26388 * 15 14 13 17 17 C 1.40223 * 120.37591 * 359.97438 * 16 15 14 18 18 C 1.38558 * 119.78156 * 225.23370 * 13 12 9 19 19 O 1.35137 * 108.52410 * 179.97438 * 17 16 15 20 20 C 1.35139 * 111.53541 * 0.02562 * 19 17 16 21 21 C 1.38961 * 132.29452 * 180.02562 * 20 19 17 22 22 C 1.37910 * 120.09440 * 179.97438 * 21 20 19 23 23 C 1.38574 * 120.60225 * 359.97311 * 22 21 20 24 24 C 1.37921 * 120.13134 * 0.02562 * 23 22 21 25 25 C 1.39083 * 119.73329 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99775 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99759 * 245.00171 * 12 9 7 28 28 H 1.08002 * 119.97278 * 0.02562 * 14 13 12 29 29 H 1.08004 * 120.08211 * 180.27643 * 15 14 13 30 30 H 1.08001 * 119.98928 * 0.02562 * 18 13 12 31 31 H 1.08005 * 119.95178 * 359.95687 * 21 20 19 32 32 H 1.08005 * 119.70073 * 179.97438 * 22 21 20 33 33 H 1.07999 * 119.93743 * 179.97438 * 23 22 21 34 34 H 1.08001 * 120.13162 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2495 11 8 0.4510 -2.7950 1.2500 12 7 2.2482 -3.9355 0.0005 13 6 3.0975 -4.1008 1.0966 14 6 2.5795 -4.0428 2.3879 15 6 3.4112 -4.2109 3.4732 16 6 4.7706 -4.4332 3.2759 17 6 5.2992 -4.4877 1.9782 18 6 4.4509 -4.3165 0.8921 19 8 6.6290 -4.7118 2.0653 20 6 7.0318 -4.8130 3.3513 21 6 8.2771 -5.0356 3.9264 22 6 8.4049 -5.0927 5.2983 23 6 7.2991 -4.9293 6.1173 24 6 6.0550 -4.7076 5.5647 25 6 5.9150 -4.6481 4.1822 26 1 -0.4850 0.8401 -0.0004 27 1 2.3170 -4.5325 -0.7608 28 1 1.5240 -3.8709 2.5387 29 1 3.0090 -4.1704 4.4748 30 1 4.8455 -4.3560 -0.1124 31 1 9.1460 -5.1642 3.2980 32 1 9.3758 -5.2664 5.7385 33 1 7.4114 -4.9765 7.1904 34 1 5.1932 -4.5798 6.2030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192971868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:25 Heat of formation + Delta-G solvation = -69.614482 kcal Electronic energy + Delta-G solvation = -23220.550390 eV Core-core repulsion = 19595.865547 eV Total energy + Delta-G solvation = -3624.684843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.45132 -39.82797 -38.70302 -37.51021 -36.29105 -35.77804 -35.19237 -32.55922 -31.96073 -30.91550 -29.01881 -28.31469 -24.90539 -24.23543 -23.25230 -22.01698 -21.19610 -20.05425 -19.19790 -18.60790 -18.24203 -17.57123 -17.46008 -17.27154 -16.85700 -16.03266 -15.99076 -15.73245 -15.28378 -15.05580 -14.82706 -14.59082 -14.06390 -13.90741 -13.66193 -13.40255 -13.30654 -13.06205 -12.91402 -12.73433 -12.62162 -12.39426 -12.33990 -12.19305 -11.84345 -11.65879 -11.29622 -11.02960 -10.40807 -10.19343 -9.21563 -8.97613 -8.78043 -7.54259 -0.44552 -0.00303 0.11842 0.56904 0.77039 1.30031 1.31242 1.47709 1.50818 2.16913 2.49857 2.53057 2.71503 2.82440 3.34146 3.53127 3.55922 3.66090 3.94757 4.08270 4.16033 4.22883 4.27670 4.46057 4.48928 4.52167 4.67125 4.81430 4.95401 5.15201 5.20355 5.23631 5.29529 5.35958 5.45901 5.50108 5.55315 5.78683 5.84192 6.10641 6.21183 6.73374 8.15714 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.003845 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.492786 B = 7280.580863 C = 7823.471824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.255 1.255 6 H -0.256 1.256 7 C -1.037 5.037 8 H 0.114 0.886 9 S 2.717 3.283 10 O -1.029 7.029 11 O -1.016 7.016 12 N -1.057 6.057 13 C 0.195 3.805 14 C -0.181 4.181 15 C -0.037 4.037 16 C -0.151 4.151 17 C 0.084 3.916 18 C -0.141 4.141 19 O -0.213 6.213 20 C 0.047 3.953 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.131 4.131 24 C -0.076 4.076 25 C -0.136 4.136 26 H 0.301 0.699 27 H 0.429 0.571 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.904 -8.873 11.455 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.179 1.179 6 H -0.180 1.180 7 C -1.171 5.171 8 H 0.132 0.868 9 S 2.819 3.181 10 O -1.019 7.019 11 O -1.006 7.006 12 N -0.806 5.806 13 C 0.098 3.902 14 C -0.202 4.202 15 C -0.056 4.056 16 C -0.152 4.152 17 C 0.037 3.963 18 C -0.164 4.164 19 O -0.119 6.119 20 C 0.002 3.998 21 C -0.140 4.140 22 C -0.096 4.096 23 C -0.149 4.149 24 C -0.094 4.094 25 C -0.136 4.136 26 H 0.112 0.888 27 H 0.266 0.734 28 H 0.170 0.830 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.193 0.807 33 H 0.184 0.816 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.845 -8.868 11.305 21.389 hybrid contribution 0.229 0.830 -0.950 1.282 sum 16.074 -8.038 10.355 20.741 Atomic orbital electron populations 1.69959 1.08451 1.32464 1.40940 1.25890 0.95381 1.04940 0.87456 0.85161 0.79265 0.75448 0.79727 1.17782 1.17927 1.17996 1.30795 1.06909 1.12230 1.67161 0.86793 1.00280 0.72272 0.73520 0.72034 1.93347 1.73958 1.88009 1.46632 1.93273 1.73741 1.87653 1.45943 1.53385 1.52791 1.48597 1.25805 1.17040 0.88595 0.97723 0.86839 1.21965 1.02921 1.03970 0.91351 1.20544 0.89868 0.95252 0.99892 1.19612 0.94591 1.08530 0.92505 1.19284 0.81456 1.00392 0.95165 1.19844 0.89659 1.08659 0.98210 1.83978 1.21910 1.78433 1.27552 1.20161 0.96634 1.02550 0.80486 1.20429 0.92883 1.04525 0.96141 1.21453 1.00970 0.96359 0.90813 1.21516 0.91127 1.00203 1.02023 1.20906 0.99920 0.97482 0.91048 1.19557 0.91275 1.07373 0.95424 0.88847 0.73350 0.82958 0.82195 0.82672 0.83054 0.80745 0.81611 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.70 13.19 21.45 0.28 -51.42 16 2 C 0.08 4.25 5.46 84.65 0.46 4.71 16 3 Si 0.99 41.39 29.54 68.60 2.03 43.42 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -1.04 -57.01 9.68 67.74 0.66 -56.36 16 8 H 0.11 5.85 7.81 -2.91 -0.02 5.82 16 9 S 2.72 142.81 4.94 -56.49 -0.28 142.53 16 10 O -1.03 -59.89 18.02 -128.00 -2.31 -62.20 16 11 O -1.02 -57.18 14.91 -128.00 -1.91 -59.09 16 12 N -1.06 -42.40 5.75 -51.39 -0.30 -42.70 16 13 C 0.20 7.48 6.20 38.22 0.24 7.72 16 14 C -0.18 -6.97 9.16 22.40 0.21 -6.76 16 15 C -0.04 -1.20 10.07 22.38 0.23 -0.98 16 16 C -0.15 -4.89 6.38 -20.12 -0.13 -5.02 16 17 C 0.08 2.84 7.33 22.90 0.17 3.01 16 18 C -0.14 -4.82 9.97 22.50 0.22 -4.59 16 19 O -0.21 -6.81 10.58 -19.33 -0.20 -7.02 16 20 C 0.05 1.28 7.34 22.91 0.17 1.45 16 21 C -0.12 -2.28 10.06 22.37 0.22 -2.06 16 22 C -0.08 -1.02 10.01 22.27 0.22 -0.79 16 23 C -0.13 -1.80 10.04 22.27 0.22 -1.57 16 24 C -0.08 -1.50 10.08 22.40 0.23 -1.28 16 25 C -0.14 -3.73 6.38 -20.15 -0.13 -3.86 16 26 H 0.30 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.43 14.16 8.95 -96.75 -0.87 13.29 16 28 H 0.15 6.46 5.55 -2.91 -0.02 6.44 16 29 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -76.39 315.41 0.61 -75.78 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.30 Total: 27.05 kcal Atomic # 6 Polarization: -69.36 SS G_CDS: 2.99 Total: -66.37 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -0.01 Total: -94.11 kcal Atomic # 8 Polarization: -123.88 SS G_CDS: -4.42 Total: -128.30 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 142.81 SS G_CDS: -0.28 Total: 142.53 kcal Total: -76.39 0.61 -75.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192971868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.169 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds