Wall clock time and date at job start Tue Mar 31 2020 11:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99600 * 2 1 4 4 H 1.48507 * 109.46827 * 269.99337 * 3 2 1 5 5 H 1.48495 * 109.47336 * 29.99728 * 3 2 1 6 6 H 1.48497 * 109.47031 * 149.99944 * 3 2 1 7 7 C 1.37873 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00114 * 0.02562 * 7 2 1 9 9 S 1.76208 * 119.99681 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40254 * 66.46083 * 9 7 2 11 11 O 1.42100 * 106.39813 * 293.53602 * 9 7 2 12 12 N 1.65597 * 107.21433 * 179.97438 * 9 7 2 13 13 C 1.39939 * 120.00205 * 64.99649 * 12 9 7 14 14 C 1.39182 * 120.01414 * 45.00003 * 13 12 9 15 15 C 1.37826 * 120.54166 * 179.97438 * 14 13 12 16 16 C 1.38997 * 120.19626 * 0.02562 * 15 14 13 17 17 O 1.35234 * 132.23419 * 180.02562 * 16 15 14 18 18 C 1.35104 * 111.54135 * 179.97438 * 17 16 15 19 19 C 1.39007 * 132.33441 * 179.97438 * 18 17 16 20 20 C 1.37886 * 120.08868 * 179.97438 * 19 18 17 21 21 C 1.38595 * 120.62045 * 0.02562 * 20 19 18 22 22 C 1.37899 * 120.12108 * 359.97438 * 21 20 19 23 23 C 1.39082 * 119.72717 * 0.02562 * 22 21 20 24 24 C 1.40139 * 119.27159 * 359.97438 * 16 15 14 25 25 C 1.38512 * 120.02156 * 224.97790 * 13 12 9 26 26 H 0.97008 * 120.00184 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00440 * 244.99614 * 12 9 7 28 28 H 1.08004 * 119.72832 * 359.95917 * 14 13 12 29 29 H 1.08000 * 119.89887 * 179.97438 * 15 14 13 30 30 H 1.07995 * 119.95141 * 0.03281 * 19 18 17 31 31 H 1.08001 * 119.69074 * 180.28502 * 20 19 18 32 32 H 1.08005 * 119.93805 * 180.02562 * 21 20 19 33 33 H 1.08002 * 120.13412 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.16693 * 0.04339 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1939 0.0012 10 8 4.1674 -0.6492 1.2510 11 8 4.1682 -0.6498 -1.2485 12 7 4.2568 -2.7756 0.0025 13 6 3.9751 -3.5964 -1.0954 14 6 4.1824 -3.1250 -2.3884 15 6 3.9091 -3.9242 -3.4775 16 6 3.4216 -5.2129 -3.2942 17 8 3.0779 -6.1874 -4.1666 18 6 2.6470 -7.2966 -3.5268 19 6 2.1966 -8.5281 -3.9882 20 6 1.8106 -9.5028 -3.0925 21 6 1.8657 -9.2690 -1.7276 22 6 2.3098 -8.0535 -1.2510 23 6 2.7015 -7.0634 -2.1458 24 6 3.2128 -5.6878 -1.9924 25 6 3.4902 -4.8784 -0.8959 26 1 -0.4851 0.8401 -0.0004 27 1 4.7392 -3.1334 0.7642 28 1 4.5604 -2.1246 -2.5396 29 1 4.0735 -3.5477 -4.4763 30 1 2.1498 -8.7219 -5.0496 31 1 1.4661 -10.4589 -3.4580 32 1 1.5610 -10.0405 -1.0358 33 1 2.3524 -7.8710 -0.1874 34 1 3.3278 -5.2474 0.1060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:30 Heat of formation + Delta-G solvation = -30.936699 kcal Electronic energy + Delta-G solvation = -23296.016412 eV Core-core repulsion = 19673.008763 eV Total energy + Delta-G solvation = -3623.007649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34073 -38.58208 -37.75454 -35.82657 -34.65900 -34.14846 -33.09699 -32.28045 -30.64683 -29.22745 -28.20875 -26.49293 -24.06099 -22.87084 -22.12138 -21.09792 -19.30643 -18.45993 -17.83739 -17.37733 -17.02633 -16.67398 -16.10730 -15.82847 -15.22033 -14.95064 -14.26217 -14.13001 -13.97805 -13.67305 -13.48972 -13.34488 -12.98007 -12.92292 -12.51581 -12.33625 -12.13777 -11.66506 -11.44333 -11.29020 -10.96527 -10.94812 -10.73167 -10.56313 -10.18581 -9.95163 -9.73085 -9.27892 -9.16489 -8.87044 -8.12462 -7.69887 -6.86390 -5.42739 0.65901 1.02171 1.55520 1.82282 1.92774 2.62149 3.02086 3.12323 3.19919 3.56206 3.87456 3.89342 4.00502 4.37048 4.52730 4.54390 4.70344 4.85632 5.06007 5.08928 5.15222 5.24225 5.37929 5.52436 5.56057 5.68689 5.89125 5.99825 6.01695 6.15321 6.23962 6.30628 6.38169 6.41161 6.56590 6.74188 6.86777 7.22511 7.40818 7.54141 8.15083 8.62571 10.25812 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.003715 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.844253 B = 7534.353158 C = 7680.246841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.154 3.846 3 Si 0.802 3.198 4 H -0.244 1.244 5 H -0.254 1.254 6 H -0.221 1.221 7 C -1.011 5.011 8 H 0.123 0.877 9 S 2.668 3.332 10 O -0.998 6.998 11 O -1.001 7.001 12 N -1.061 6.061 13 C 0.162 3.838 14 C -0.106 4.106 15 C -0.091 4.091 16 C 0.062 3.938 17 O -0.202 6.202 18 C 0.084 3.916 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.143 4.143 22 C -0.062 4.062 23 C -0.115 4.115 24 C -0.109 4.109 25 C -0.085 4.085 26 H 0.282 0.718 27 H 0.416 0.584 28 H 0.176 0.824 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -15.886 -4.942 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.066 4.066 3 Si 0.622 3.378 4 H -0.168 1.168 5 H -0.178 1.178 6 H -0.143 1.143 7 C -1.146 5.146 8 H 0.141 0.859 9 S 2.771 3.229 10 O -0.988 6.988 11 O -0.991 6.991 12 N -0.806 5.806 13 C 0.065 3.935 14 C -0.126 4.126 15 C -0.110 4.110 16 C 0.016 3.984 17 O -0.106 6.106 18 C 0.037 3.963 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.161 4.161 22 C -0.080 4.080 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.107 4.107 26 H 0.093 0.907 27 H 0.251 0.749 28 H 0.193 0.807 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.351 -14.903 -5.288 16.694 hybrid contribution -0.447 0.246 0.505 0.718 sum 4.904 -14.656 -4.783 16.178 Atomic orbital electron populations 1.69984 1.06580 1.29165 1.38940 1.24411 0.94807 0.98742 0.88643 0.87860 0.83491 0.84513 0.81965 1.16780 1.17773 1.14291 1.30279 1.14718 1.02467 1.67173 0.85879 1.01752 0.77735 0.69817 0.73553 1.93501 1.85643 1.74858 1.44798 1.93348 1.85208 1.75463 1.45074 1.53498 1.70649 1.31555 1.24940 1.17136 0.98384 0.90983 0.87009 1.21892 0.98784 1.02035 0.89935 1.19855 1.01977 0.88787 1.00343 1.19555 1.01647 0.90545 0.86633 1.84034 1.71480 1.20283 1.34847 1.19598 0.98560 0.88061 0.90042 1.19966 1.03466 0.89446 1.00818 1.20900 0.98599 0.98374 0.92845 1.21012 1.02347 0.97168 0.95618 1.20560 0.96438 0.91713 0.99331 1.19363 1.04763 0.93821 0.93678 1.19032 1.05106 0.93207 0.93701 1.20381 0.99080 0.93247 0.98040 0.90749 0.74925 0.80674 0.84245 0.84977 0.84794 0.85205 0.85271 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.34 13.96 55.43 0.77 -22.57 16 2 C 0.15 4.34 5.47 -17.82 -0.10 4.24 16 3 Si 0.80 19.96 26.54 -169.99 -4.51 15.45 16 4 H -0.24 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.25 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.22 -5.55 5.61 56.52 0.32 -5.23 16 7 C -1.01 -27.65 10.22 30.60 0.31 -27.34 16 8 H 0.12 3.47 8.06 -52.49 -0.42 3.04 16 9 S 2.67 63.52 4.16 -107.50 -0.45 63.08 16 10 O -1.00 -25.52 16.02 -57.17 -0.92 -26.44 16 11 O -1.00 -24.56 13.75 -57.17 -0.79 -25.35 16 12 N -1.06 -19.68 5.78 32.44 0.19 -19.49 16 13 C 0.16 2.93 6.22 -83.71 -0.52 2.41 16 14 C -0.11 -1.90 9.16 -39.38 -0.36 -2.26 16 15 C -0.09 -1.45 10.05 -39.45 -0.40 -1.85 16 16 C 0.06 1.03 7.34 -38.59 -0.28 0.75 16 17 O -0.20 -3.20 10.58 0.82 0.01 -3.19 16 18 C 0.08 1.20 7.34 -38.58 -0.28 0.92 16 19 C -0.12 -1.30 10.06 -39.43 -0.40 -1.70 16 20 C -0.09 -0.81 10.01 -39.58 -0.40 -1.21 16 21 C -0.14 -1.37 10.04 -39.57 -0.40 -1.76 16 22 C -0.06 -0.74 10.08 -39.39 -0.40 -1.13 16 23 C -0.12 -1.70 6.38 -105.06 -0.67 -2.37 16 24 C -0.11 -1.79 6.37 -105.07 -0.67 -2.46 16 25 C -0.09 -1.40 10.01 -39.17 -0.39 -1.79 16 26 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.42 6.26 8.95 -34.47 -0.31 5.95 16 28 H 0.18 3.27 5.56 -52.48 -0.29 2.98 16 29 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -32.63 308.60 -8.77 -41.40 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -2.78 Total: 8.00 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: -4.95 Total: -35.54 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.96 Total: -42.06 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -1.69 Total: -54.98 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.51 Total: 15.45 kcal Atomic # 16 Polarization: 63.52 SS G_CDS: -0.45 Total: 63.08 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.63 -8.77 -41.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.459 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds