Wall clock time and date at job start Tue Mar 31 2020 11:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99600 * 2 1 4 4 H 1.48507 * 109.46827 * 269.99337 * 3 2 1 5 5 H 1.48495 * 109.47336 * 29.99728 * 3 2 1 6 6 H 1.48497 * 109.47031 * 149.99944 * 3 2 1 7 7 C 1.37873 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00114 * 0.02562 * 7 2 1 9 9 S 1.76208 * 119.99681 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40254 * 66.46083 * 9 7 2 11 11 O 1.42100 * 106.39813 * 293.53602 * 9 7 2 12 12 N 1.65597 * 107.21433 * 179.97438 * 9 7 2 13 13 C 1.39939 * 120.00205 * 64.99649 * 12 9 7 14 14 C 1.39182 * 120.01414 * 45.00003 * 13 12 9 15 15 C 1.37826 * 120.54166 * 179.97438 * 14 13 12 16 16 C 1.38997 * 120.19626 * 0.02562 * 15 14 13 17 17 O 1.35234 * 132.23419 * 180.02562 * 16 15 14 18 18 C 1.35104 * 111.54135 * 179.97438 * 17 16 15 19 19 C 1.39007 * 132.33441 * 179.97438 * 18 17 16 20 20 C 1.37886 * 120.08868 * 179.97438 * 19 18 17 21 21 C 1.38595 * 120.62045 * 0.02562 * 20 19 18 22 22 C 1.37899 * 120.12108 * 359.97438 * 21 20 19 23 23 C 1.39082 * 119.72717 * 0.02562 * 22 21 20 24 24 C 1.40139 * 119.27159 * 359.97438 * 16 15 14 25 25 C 1.38512 * 120.02156 * 224.97790 * 13 12 9 26 26 H 0.97008 * 120.00184 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00440 * 244.99614 * 12 9 7 28 28 H 1.08004 * 119.72832 * 359.95917 * 14 13 12 29 29 H 1.08000 * 119.89887 * 179.97438 * 15 14 13 30 30 H 1.07995 * 119.95141 * 0.03281 * 19 18 17 31 31 H 1.08001 * 119.69074 * 180.28502 * 20 19 18 32 32 H 1.08005 * 119.93805 * 180.02562 * 21 20 19 33 33 H 1.08002 * 120.13412 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.16693 * 0.04339 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1939 0.0012 10 8 4.1674 -0.6492 1.2510 11 8 4.1682 -0.6498 -1.2485 12 7 4.2568 -2.7756 0.0025 13 6 3.9751 -3.5964 -1.0954 14 6 4.1824 -3.1250 -2.3884 15 6 3.9091 -3.9242 -3.4775 16 6 3.4216 -5.2129 -3.2942 17 8 3.0779 -6.1874 -4.1666 18 6 2.6470 -7.2966 -3.5268 19 6 2.1966 -8.5281 -3.9882 20 6 1.8106 -9.5028 -3.0925 21 6 1.8657 -9.2690 -1.7276 22 6 2.3098 -8.0535 -1.2510 23 6 2.7015 -7.0634 -2.1458 24 6 3.2128 -5.6878 -1.9924 25 6 3.4902 -4.8784 -0.8959 26 1 -0.4851 0.8401 -0.0004 27 1 4.7392 -3.1334 0.7642 28 1 4.5604 -2.1246 -2.5396 29 1 4.0735 -3.5477 -4.4763 30 1 2.1498 -8.7219 -5.0496 31 1 1.4661 -10.4589 -3.4580 32 1 1.5610 -10.0405 -1.0358 33 1 2.3524 -7.8710 -0.1874 34 1 3.3278 -5.2474 0.1060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:29 Heat of formation + Delta-G solvation = -53.402056 kcal Electronic energy + Delta-G solvation = -23296.990583 eV Core-core repulsion = 19673.008763 eV Total energy + Delta-G solvation = -3623.981820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.44837 -39.83055 -38.73496 -37.77179 -36.63023 -35.57459 -35.19173 -33.38693 -31.57343 -30.33788 -29.47645 -28.60149 -25.14245 -23.98086 -23.29256 -22.21413 -21.13137 -19.81217 -19.42414 -18.86996 -18.63553 -17.99637 -17.31135 -17.20822 -16.73137 -16.15466 -15.94133 -15.57129 -15.26303 -14.99272 -14.98060 -14.73573 -14.48759 -14.34231 -13.84697 -13.52638 -13.36135 -13.31712 -12.96302 -12.90480 -12.71254 -12.56308 -12.26811 -11.97748 -11.89137 -11.53986 -11.34939 -11.16197 -10.82879 -9.93768 -9.22030 -8.98757 -8.96004 -7.56831 -0.41217 -0.23449 0.10225 0.54978 0.76052 1.05677 1.15538 1.21116 1.52644 1.88087 2.28443 2.41417 2.49751 2.78833 3.12265 3.33432 3.53202 3.63546 3.81058 4.04378 4.08726 4.21940 4.24099 4.32073 4.48863 4.51281 4.60906 4.81189 4.97228 5.07046 5.11867 5.28251 5.31148 5.36262 5.41024 5.47532 5.50398 5.77462 5.98044 6.08944 6.19176 6.50274 8.19883 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.003715 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.844253 B = 7534.353158 C = 7680.246841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.109 3.891 3 Si 0.828 3.172 4 H -0.234 1.234 5 H -0.221 1.221 6 H -0.225 1.225 7 C -1.037 5.037 8 H 0.101 0.899 9 S 2.697 3.303 10 O -1.015 7.015 11 O -1.009 7.009 12 N -1.046 6.046 13 C 0.138 3.862 14 C -0.127 4.127 15 C -0.088 4.088 16 C 0.049 3.951 17 O -0.211 6.211 18 C 0.053 3.947 19 C -0.122 4.122 20 C -0.075 4.075 21 C -0.133 4.133 22 C -0.075 4.075 23 C -0.145 4.145 24 C -0.118 4.118 25 C -0.086 4.086 26 H 0.292 0.708 27 H 0.432 0.568 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.154 0.846 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -18.230 -5.226 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.108 4.108 3 Si 0.644 3.356 4 H -0.157 1.157 5 H -0.144 1.144 6 H -0.148 1.148 7 C -1.169 5.169 8 H 0.119 0.881 9 S 2.798 3.202 10 O -1.005 7.005 11 O -0.999 6.999 12 N -0.797 5.797 13 C 0.042 3.958 14 C -0.148 4.148 15 C -0.107 4.107 16 C 0.003 3.997 17 O -0.117 6.117 18 C 0.008 3.992 19 C -0.141 4.141 20 C -0.092 4.092 21 C -0.151 4.151 22 C -0.093 4.093 23 C -0.146 4.146 24 C -0.120 4.120 25 C -0.107 4.107 26 H 0.103 0.897 27 H 0.270 0.730 28 H 0.183 0.817 29 H 0.181 0.819 30 H 0.172 0.828 31 H 0.194 0.806 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.263 -17.249 -5.561 18.872 hybrid contribution -0.493 0.630 0.529 0.959 sum 4.771 -16.619 -5.032 18.008 Atomic orbital electron populations 1.70020 1.07663 1.30614 1.40018 1.25195 0.95632 1.01561 0.88426 0.87446 0.82844 0.82362 0.82903 1.15739 1.14363 1.14775 1.30841 1.17571 1.01684 1.66819 0.88101 1.00768 0.75813 0.70802 0.72796 1.93468 1.85244 1.76286 1.45546 1.93339 1.84607 1.76633 1.45295 1.52885 1.70528 1.30239 1.26039 1.17294 1.00149 0.91688 0.86712 1.21866 1.00254 1.02040 0.90625 1.20041 1.01090 0.88594 1.00992 1.19758 1.01728 0.90971 0.87234 1.83994 1.71911 1.20767 1.35015 1.20170 1.00109 0.88731 0.90197 1.20448 1.02652 0.88350 1.02620 1.21475 0.96135 0.99223 0.92395 1.21511 1.00169 0.96747 0.96679 1.20898 0.96517 0.92069 0.99802 1.19566 1.06663 0.93667 0.94657 1.19380 1.04591 0.94445 0.93590 1.20545 0.98401 0.92593 0.99211 0.89747 0.72965 0.81725 0.81866 0.82784 0.80593 0.81657 0.84004 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.49 13.96 21.45 0.30 -49.20 16 2 C 0.11 6.21 5.47 84.65 0.46 6.68 16 3 Si 0.83 40.21 26.54 68.60 1.82 42.03 16 4 H -0.23 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.22 -9.53 7.11 99.48 0.71 -8.83 16 6 H -0.23 -11.09 5.61 99.48 0.56 -10.53 16 7 C -1.04 -58.14 10.22 67.73 0.69 -57.44 16 8 H 0.10 5.93 8.06 -2.91 -0.02 5.91 16 9 S 2.70 129.61 4.16 -56.49 -0.24 129.37 16 10 O -1.02 -51.84 16.02 -128.00 -2.05 -53.90 16 11 O -1.01 -49.89 13.75 -128.00 -1.76 -51.65 16 12 N -1.05 -39.22 5.78 -51.28 -0.30 -39.52 16 13 C 0.14 5.09 6.22 38.14 0.24 5.33 16 14 C -0.13 -4.69 9.16 22.40 0.21 -4.49 16 15 C -0.09 -2.90 10.05 22.35 0.22 -2.67 16 16 C 0.05 1.67 7.34 22.91 0.17 1.84 16 17 O -0.21 -6.75 10.58 -19.98 -0.21 -6.97 16 18 C 0.05 1.49 7.34 22.92 0.17 1.66 16 19 C -0.12 -2.36 10.06 22.37 0.23 -2.13 16 20 C -0.07 -1.03 10.01 22.27 0.22 -0.80 16 21 C -0.13 -2.00 10.04 22.27 0.22 -1.78 16 22 C -0.07 -1.61 10.08 22.39 0.23 -1.39 16 23 C -0.14 -4.16 6.38 -20.15 -0.13 -4.29 16 24 C -0.12 -3.94 6.37 -20.16 -0.13 -4.07 16 25 C -0.09 -2.84 10.01 22.54 0.23 -2.61 16 26 H 0.29 15.20 8.31 -92.70 -0.77 14.43 16 27 H 0.43 12.95 8.95 -96.75 -0.87 12.08 16 28 H 0.17 6.36 5.56 -2.91 -0.02 6.34 16 29 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -72.09 308.60 0.75 -71.35 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.15 Total: 24.65 kcal Atomic # 6 Polarization: -69.20 SS G_CDS: 3.02 Total: -66.18 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: 0.00 Total: -88.71 kcal Atomic # 8 Polarization: -108.49 SS G_CDS: -4.02 Total: -112.51 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.82 Total: 42.03 kcal Atomic # 16 Polarization: 129.61 SS G_CDS: -0.24 Total: 129.37 kcal Total: -72.09 0.75 -71.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.944 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds