Wall clock time and date at job start Tue Mar 31 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34720 * 117.00263 * 2 1 4 4 O 1.21490 * 120.00044 * 0.02562 * 3 2 1 5 5 C 1.47579 * 120.00374 * 180.02562 * 3 2 1 6 6 C 1.39795 * 120.13766 * 270.00243 * 5 3 2 7 7 C 1.50691 * 119.99593 * 0.02562 * 6 5 3 8 8 C 1.37843 * 120.01008 * 180.02562 * 6 5 3 9 9 C 1.38392 * 120.29527 * 359.97438 * 8 6 5 10 10 C 1.38779 * 120.28036 * 0.25053 * 9 8 6 11 11 N 1.39878 * 120.01170 * 179.75357 * 10 9 8 12 12 S 1.65596 * 119.99847 * 327.12749 * 11 10 9 13 13 O 1.42100 * 106.40296 * 181.25395 * 12 11 10 14 14 O 1.42107 * 106.40426 * 314.17373 * 12 11 10 15 15 C 1.76202 * 107.21961 * 67.71021 * 12 11 10 16 16 H 1.08003 * 119.99904 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00505 * 179.97438 * 15 12 11 18 18 N 1.31524 * 119.99543 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00206 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47509 * 60.00096 * 19 17 15 21 21 H 1.48507 * 109.47212 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47098 * 299.99664 * 19 17 15 23 23 C 1.38985 * 119.98297 * 359.51250 * 10 9 8 24 24 F 1.35100 * 120.15182 * 180.23532 * 23 10 9 25 25 H 1.09004 * 109.47119 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46882 * 299.99593 * 1 2 3 27 27 H 1.08995 * 109.47311 * 59.99993 * 1 2 3 28 28 H 1.09000 * 109.47012 * 270.02319 * 7 6 5 29 29 H 1.08997 * 109.47171 * 30.02012 * 7 6 5 30 30 H 1.09000 * 109.47628 * 150.02117 * 7 6 5 31 31 H 1.07999 * 119.84851 * 179.97438 * 8 6 5 32 32 H 1.08000 * 119.86222 * 179.97438 * 9 8 6 33 33 H 0.96995 * 119.99910 * 147.12988 * 11 10 9 34 34 H 0.97002 * 119.99464 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5374 1.2776 -0.0006 6 6 4.2388 1.3141 1.2081 7 6 3.4900 1.2739 2.5152 8 6 5.6153 1.3868 1.2045 9 6 6.3094 1.4235 0.0078 10 6 5.6251 1.3926 -1.1992 11 7 6.3320 1.4352 -2.4055 12 16 7.7468 2.2898 -2.5063 13 8 8.1974 2.1631 -3.8480 14 8 7.5036 3.5436 -1.8833 15 6 8.9318 1.4572 -1.5026 16 1 8.6534 0.5595 -0.9706 17 6 10.2147 1.9511 -1.3972 18 7 10.5539 3.0440 -2.0455 19 14 11.4710 1.0680 -0.3338 20 1 11.6599 -0.3164 -0.8368 21 1 12.7645 1.7956 -0.3881 22 1 10.9876 1.0231 1.0696 23 6 4.2375 1.3144 -1.2091 24 9 3.5682 1.2793 -2.3822 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.2549 2.2904 2.8306 29 1 2.5658 0.7103 2.3873 30 1 4.1075 0.7919 3.2731 31 1 6.1545 1.4152 2.1398 32 1 7.3878 1.4808 0.0131 33 1 5.9934 0.9642 -3.1828 34 1 11.4564 3.3917 -1.9710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:29 Heat of formation + Delta-G solvation = -194.920068 kcal Electronic energy + Delta-G solvation = -24674.432339 eV Core-core repulsion = 20613.544613 eV Total energy + Delta-G solvation = -4060.887726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -48.84807 -40.65434 -39.03822 -36.54609 -35.57130 -35.12488 -34.21779 -33.31537 -31.17466 -30.96275 -28.01242 -26.48721 -26.22269 -24.07494 -21.85497 -21.13472 -19.18759 -18.44517 -17.81826 -17.50152 -17.12708 -16.95579 -16.13747 -16.03128 -15.62134 -15.39687 -14.98562 -14.28111 -14.20307 -13.93028 -13.67596 -13.66124 -13.41208 -13.13146 -12.52509 -12.35342 -12.22163 -12.07243 -11.92367 -11.83684 -11.32778 -11.14946 -10.97802 -10.93326 -10.75268 -10.72509 -10.53493 -10.43260 -10.22334 -9.38863 -9.03046 -8.83341 -7.90204 -6.88190 -5.54878 0.95130 1.24904 1.88105 1.99955 2.56051 2.98823 3.04769 3.08891 3.54461 3.89344 4.10573 4.29895 4.46352 4.54689 4.80018 4.88891 4.92601 4.97873 5.16142 5.29378 5.36845 5.41586 5.50662 5.56831 5.80207 5.83777 6.02565 6.14169 6.19987 6.25026 6.43402 6.55276 6.86856 7.13109 7.51626 7.51961 7.71863 8.67725 10.06128 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.004308 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.729929 B = 6498.220993 C = 7263.199265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.349 6.349 3 C 0.525 3.475 4 O -0.489 6.489 5 C -0.126 4.126 6 C -0.055 4.055 7 C -0.115 4.115 8 C -0.092 4.092 9 C -0.118 4.118 10 C 0.167 3.833 11 N -1.065 6.065 12 S 2.698 3.302 13 O -0.991 6.991 14 O -0.985 6.985 15 C -1.025 5.025 16 H 0.112 0.888 17 C 0.135 3.865 18 N -0.837 5.837 19 Si 0.924 3.076 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.261 1.261 23 C 0.098 3.902 24 F -0.131 7.131 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.178 0.822 33 H 0.417 0.583 34 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 -7.874 8.708 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.265 6.265 3 C 0.367 3.633 4 O -0.375 6.375 5 C -0.128 4.128 6 C -0.056 4.056 7 C -0.172 4.172 8 C -0.110 4.110 9 C -0.139 4.139 10 C 0.067 3.933 11 N -0.806 5.806 12 S 2.798 3.202 13 O -0.981 6.981 14 O -0.975 6.975 15 C -1.158 5.158 16 H 0.130 0.870 17 C -0.085 4.085 18 N -0.466 5.466 19 Si 0.747 3.253 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.185 1.185 23 C 0.074 3.926 24 F -0.109 7.109 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.195 0.805 33 H 0.250 0.750 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.708 -6.520 8.119 16.429 hybrid contribution 0.321 -1.013 0.062 1.065 sum -12.387 -7.533 8.181 16.647 Atomic orbital electron populations 1.23328 0.76171 1.03868 1.02727 1.86687 1.23426 1.32547 1.83889 1.20984 0.88639 0.81757 0.71895 1.90870 1.66367 1.36065 1.44246 1.18614 0.89170 1.11695 0.93360 1.19580 0.93844 0.99386 0.92819 1.20837 0.99717 1.03010 0.93630 1.20833 0.92196 0.99559 0.98459 1.22141 1.04012 0.97815 0.89913 1.17232 0.88413 1.00002 0.87633 1.54372 1.43076 1.67763 1.15413 1.01268 0.71101 0.73304 0.74505 1.93408 1.78959 1.86875 1.38893 1.93424 1.84616 1.41402 1.78070 1.30489 1.11428 1.26079 1.47829 0.87036 1.24765 0.97945 0.92967 0.92836 1.69881 1.22587 1.18391 1.35738 0.86130 0.78650 0.80079 0.80406 1.18683 1.19997 1.18503 1.17249 0.88524 1.06681 0.80136 1.91477 1.80147 1.93984 1.45298 0.87845 0.91725 0.91706 0.90309 0.91931 0.90152 0.83762 0.80460 0.74978 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.51 10.58 -40.55 -0.43 -4.94 16 3 C 0.53 8.09 5.49 34.54 0.19 8.28 16 4 O -0.49 -8.47 16.90 -19.26 -0.33 -8.79 16 5 C -0.13 -2.02 5.76 -104.95 -0.60 -2.63 16 6 C -0.05 -0.76 5.92 -104.19 -0.62 -1.37 16 7 C -0.12 -1.17 9.61 36.00 0.35 -0.83 16 8 C -0.09 -1.30 9.67 -39.67 -0.38 -1.68 16 9 C -0.12 -2.09 8.93 -39.32 -0.35 -2.44 16 10 C 0.17 3.18 6.20 -83.71 -0.52 2.66 16 11 N -1.07 -21.63 5.71 32.44 0.19 -21.45 16 12 S 2.70 68.84 4.63 -107.50 -0.50 68.34 16 13 O -0.99 -28.04 18.02 -57.17 -1.03 -29.07 16 14 O -0.99 -27.74 17.43 -57.17 -1.00 -28.74 16 15 C -1.03 -25.68 7.57 30.60 0.23 -25.45 16 16 H 0.11 2.45 6.90 -52.48 -0.36 2.09 16 17 C 0.13 3.46 5.46 -17.82 -0.10 3.36 16 18 N -0.84 -23.14 13.19 55.43 0.73 -22.40 16 19 Si 0.92 18.84 29.54 -169.99 -5.02 13.82 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 C 0.10 1.75 7.30 -38.75 -0.28 1.47 16 24 F -0.13 -2.33 16.48 2.25 0.04 -2.29 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.62 7.08 -51.93 -0.37 0.25 16 30 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.18 3.35 4.45 -52.49 -0.23 3.12 16 33 H 0.42 7.33 8.74 -34.47 -0.30 7.03 16 34 H 0.30 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -34.38 320.45 -6.47 -40.85 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -2.93 Total: 7.10 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.02 Total: -17.26 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.92 Total: -43.85 kcal Atomic # 8 Polarization: -68.75 SS G_CDS: -2.78 Total: -71.53 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Atomic # 16 Polarization: 68.84 SS G_CDS: -0.50 Total: 68.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.38 -6.47 -40.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.067 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds