Wall clock time and date at job start Tue Mar 31 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34720 * 117.00263 * 2 1 4 4 O 1.21490 * 120.00044 * 0.02562 * 3 2 1 5 5 C 1.47579 * 120.00374 * 180.02562 * 3 2 1 6 6 C 1.39795 * 120.13766 * 270.00243 * 5 3 2 7 7 C 1.50691 * 119.99593 * 0.02562 * 6 5 3 8 8 C 1.37843 * 120.01008 * 180.02562 * 6 5 3 9 9 C 1.38392 * 120.29527 * 359.97438 * 8 6 5 10 10 C 1.38779 * 120.28036 * 0.25053 * 9 8 6 11 11 N 1.39878 * 120.01170 * 179.75357 * 10 9 8 12 12 S 1.65596 * 119.99847 * 327.12749 * 11 10 9 13 13 O 1.42100 * 106.40296 * 181.25395 * 12 11 10 14 14 O 1.42107 * 106.40426 * 314.17373 * 12 11 10 15 15 C 1.76202 * 107.21961 * 67.71021 * 12 11 10 16 16 H 1.08003 * 119.99904 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00505 * 179.97438 * 15 12 11 18 18 N 1.31524 * 119.99543 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00206 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47509 * 60.00096 * 19 17 15 21 21 H 1.48507 * 109.47212 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47098 * 299.99664 * 19 17 15 23 23 C 1.38985 * 119.98297 * 359.51250 * 10 9 8 24 24 F 1.35100 * 120.15182 * 180.23532 * 23 10 9 25 25 H 1.09004 * 109.47119 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46882 * 299.99593 * 1 2 3 27 27 H 1.08995 * 109.47311 * 59.99993 * 1 2 3 28 28 H 1.09000 * 109.47012 * 270.02319 * 7 6 5 29 29 H 1.08997 * 109.47171 * 30.02012 * 7 6 5 30 30 H 1.09000 * 109.47628 * 150.02117 * 7 6 5 31 31 H 1.07999 * 119.84851 * 179.97438 * 8 6 5 32 32 H 1.08000 * 119.86222 * 179.97438 * 9 8 6 33 33 H 0.96995 * 119.99910 * 147.12988 * 11 10 9 34 34 H 0.97002 * 119.99464 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5374 1.2776 -0.0006 6 6 4.2388 1.3141 1.2081 7 6 3.4900 1.2739 2.5152 8 6 5.6153 1.3868 1.2045 9 6 6.3094 1.4235 0.0078 10 6 5.6251 1.3926 -1.1992 11 7 6.3320 1.4352 -2.4055 12 16 7.7468 2.2898 -2.5063 13 8 8.1974 2.1631 -3.8480 14 8 7.5036 3.5436 -1.8833 15 6 8.9318 1.4572 -1.5026 16 1 8.6534 0.5595 -0.9706 17 6 10.2147 1.9511 -1.3972 18 7 10.5539 3.0440 -2.0455 19 14 11.4710 1.0680 -0.3338 20 1 11.6599 -0.3164 -0.8368 21 1 12.7645 1.7956 -0.3881 22 1 10.9876 1.0231 1.0696 23 6 4.2375 1.3144 -1.2091 24 9 3.5682 1.2793 -2.3822 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.2549 2.2904 2.8306 29 1 2.5658 0.7103 2.3873 30 1 4.1075 0.7919 3.2731 31 1 6.1545 1.4152 2.1398 32 1 7.3878 1.4808 0.0131 33 1 5.9934 0.9642 -3.1828 34 1 11.4564 3.3917 -1.9710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:29 Heat of formation + Delta-G solvation = -220.651812 kcal Electronic energy + Delta-G solvation = -24675.548151 eV Core-core repulsion = 20613.544613 eV Total energy + Delta-G solvation = -4062.003538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.22591 -41.80116 -40.29217 -37.70288 -37.56344 -36.60555 -36.32623 -35.25265 -32.43966 -32.15526 -28.92801 -28.38561 -27.34899 -25.29491 -23.05862 -22.43684 -20.96526 -19.93858 -19.40815 -18.91126 -18.42008 -18.38211 -17.72031 -17.25038 -16.98411 -16.93716 -16.60140 -15.97787 -15.72092 -15.46756 -14.83883 -14.64990 -14.60336 -14.21728 -14.02533 -13.67913 -13.62536 -13.15987 -13.13315 -13.04838 -12.96302 -12.79950 -12.66304 -12.60498 -12.46397 -12.26945 -12.01924 -11.91641 -11.61277 -11.20522 -10.95646 -10.11926 -9.27997 -8.78228 -7.55307 -0.31627 -0.10799 0.12011 0.75257 1.41046 1.42733 1.51041 1.56673 2.20021 2.29483 2.55387 2.61201 2.83979 3.44291 3.52965 3.68449 3.77970 3.92923 4.03775 4.24266 4.28162 4.31029 4.43180 4.63083 4.69835 4.75138 4.82001 4.95236 5.01949 5.04291 5.16771 5.24760 5.30805 5.62403 5.83759 5.98278 6.40039 6.72345 8.18476 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.004308 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.729929 B = 6498.220993 C = 7263.199265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.350 6.350 3 C 0.531 3.469 4 O -0.515 6.515 5 C -0.138 4.138 6 C -0.040 4.040 7 C -0.116 4.116 8 C -0.078 4.078 9 C -0.135 4.135 10 C 0.135 3.865 11 N -1.059 6.059 12 S 2.700 3.300 13 O -1.032 7.032 14 O -1.023 7.023 15 C -1.029 5.029 16 H 0.139 0.861 17 C 0.075 3.925 18 N -0.890 5.890 19 Si 0.995 3.005 20 H -0.252 1.252 21 H -0.270 1.270 22 H -0.236 1.236 23 C 0.083 3.917 24 F -0.138 7.138 25 H 0.139 0.861 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.187 0.813 32 H 0.165 0.835 33 H 0.425 0.575 34 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.310 -9.818 12.010 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.266 6.266 3 C 0.374 3.626 4 O -0.404 6.404 5 C -0.140 4.140 6 C -0.042 4.042 7 C -0.172 4.172 8 C -0.096 4.096 9 C -0.156 4.156 10 C 0.037 3.963 11 N -0.804 5.804 12 S 2.803 3.197 13 O -1.022 7.022 14 O -1.013 7.013 15 C -1.163 5.163 16 H 0.156 0.844 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.812 3.188 20 H -0.176 1.176 21 H -0.194 1.194 22 H -0.159 1.159 23 C 0.060 3.940 24 F -0.116 7.116 25 H 0.157 0.843 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.204 0.796 32 H 0.182 0.818 33 H 0.261 0.739 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.292 -8.476 11.410 19.461 hybrid contribution 0.298 -0.456 -0.915 1.065 sum -12.994 -8.932 10.495 18.941 Atomic orbital electron populations 1.23736 0.73740 1.06390 1.03086 1.86672 1.25752 1.30999 1.83136 1.20851 0.88331 0.82111 0.71340 1.90858 1.66777 1.37004 1.45719 1.18945 0.90003 1.11570 0.93516 1.20113 0.93975 0.96393 0.93686 1.20993 1.00073 1.04048 0.92078 1.21285 0.92435 0.97248 0.98667 1.22215 1.03634 0.98919 0.90864 1.17463 0.88983 1.02613 0.87285 1.53661 1.42164 1.67767 1.16804 1.00814 0.71818 0.73254 0.73765 1.93343 1.80301 1.87514 1.41071 1.93361 1.85495 1.44044 1.78366 1.30713 1.11298 1.26788 1.47539 0.84371 1.26062 1.00363 0.93481 0.94007 1.69994 1.23657 1.20516 1.37902 0.85089 0.75605 0.78796 0.79327 1.17626 1.19417 1.15900 1.17389 0.88267 1.07694 0.80697 1.91447 1.80173 1.94177 1.45846 0.84263 0.90684 0.92122 0.89405 0.91485 0.86774 0.79556 0.81761 0.73949 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -8.35 10.58 -56.30 -0.60 -8.95 16 3 C 0.53 15.66 5.49 70.29 0.39 16.05 16 4 O -0.51 -17.38 16.90 19.87 0.34 -17.05 16 5 C -0.14 -4.27 5.76 -20.08 -0.12 -4.38 16 6 C -0.04 -1.00 5.92 -19.58 -0.12 -1.11 16 7 C -0.12 -1.87 9.61 71.23 0.68 -1.18 16 8 C -0.08 -1.98 9.67 22.21 0.21 -1.77 16 9 C -0.14 -4.69 8.93 22.44 0.20 -4.49 16 10 C 0.14 5.20 6.20 38.17 0.24 5.44 16 11 N -1.06 -44.59 5.71 -51.28 -0.29 -44.88 16 12 S 2.70 142.97 4.63 -56.49 -0.26 142.71 16 13 O -1.03 -61.13 18.02 -128.00 -2.31 -63.44 16 14 O -1.02 -60.05 17.43 -128.00 -2.23 -62.28 16 15 C -1.03 -51.77 7.57 67.73 0.51 -51.26 16 16 H 0.14 5.96 6.90 -2.91 -0.02 5.94 16 17 C 0.08 3.85 5.46 84.65 0.46 4.31 16 18 N -0.89 -50.27 13.19 21.45 0.28 -49.99 16 19 Si 0.99 37.23 29.54 68.60 2.03 39.25 16 20 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 21 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.24 -7.86 7.11 99.48 0.71 -7.15 16 23 C 0.08 3.00 7.30 22.81 0.17 3.17 16 24 F -0.14 -5.05 16.48 44.97 0.74 -4.31 16 25 H 0.14 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.06 7.08 -2.39 -0.02 1.05 16 30 H 0.11 1.12 8.08 -2.39 -0.02 1.10 16 31 H 0.19 3.07 8.06 -2.91 -0.02 3.04 16 32 H 0.17 6.13 4.45 -2.91 -0.01 6.11 16 33 H 0.42 15.78 8.74 -96.75 -0.85 14.93 16 34 H 0.30 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.81 320.45 1.86 -75.95 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.33 Total: 26.66 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 3.83 Total: -33.68 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -0.01 Total: -94.87 kcal Atomic # 8 Polarization: -146.91 SS G_CDS: -4.80 Total: -151.71 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.74 Total: -4.31 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: 142.97 SS G_CDS: -0.26 Total: 142.71 kcal Total: -77.81 1.86 -75.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.702 kcal (2) G-P(sol) polarization free energy of solvation -77.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds