Wall clock time and date at job start Tue Mar 31 2020 11:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.43193 * 119.99850 * 337.55573 * 3 2 1 5 5 N 3.51041 * 140.68628 * 337.55729 * 2 1 3 6 6 C 1.41067 * 119.99958 * 157.55134 * 3 2 1 7 7 C 1.38844 * 120.00011 * 5.26509 * 6 3 2 8 8 H 1.08008 * 119.99863 * 333.51410 * 7 6 3 9 9 C 1.40922 * 120.00204 * 153.51106 * 7 6 3 10 10 N 1.30294 * 119.99792 * 0.69606 * 9 7 6 11 11 Si 1.86795 * 120.00107 * 180.69096 * 9 7 6 12 12 H 1.48503 * 109.47414 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47111 * 120.00071 * 11 9 7 14 14 H 1.48498 * 109.47245 * 240.00108 * 11 9 7 15 15 N 1.38733 * 120.00176 * 185.26417 * 6 3 2 16 16 C 1.34774 * 120.00483 * 120.14679 * 15 6 3 17 17 O 1.21504 * 119.99596 * 5.03927 * 16 15 6 18 18 O 1.34663 * 120.00383 * 185.03706 * 16 15 6 19 19 C 1.35947 * 116.99893 * 184.12165 * 18 16 15 20 20 C 1.38718 * 120.04743 * 76.89617 * 19 18 16 21 21 C 1.38142 * 119.96072 * 179.74033 * 20 19 18 22 22 C 1.38367 * 120.03957 * 0.51195 * 21 20 19 23 23 Cl 1.73599 * 119.95737 * 179.74357 * 22 21 20 24 24 C 1.38372 * 120.08443 * 359.76302 * 22 21 20 25 25 C 1.38141 * 120.04276 * 359.97438 * 24 22 21 26 26 H 0.96995 * 119.99864 * 185.01575 * 10 9 7 27 27 H 0.97003 * 119.99831 * 300.14475 * 15 6 3 28 28 H 1.08004 * 120.01837 * 359.97438 * 20 19 18 29 29 H 1.07994 * 119.97676 * 180.25504 * 21 20 19 30 30 H 1.07999 * 119.97587 * 179.97438 * 24 22 21 31 31 H 1.07998 * 120.01931 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.1452 0.4735 5 7 3.8519 -2.0556 0.8491 6 6 3.2729 1.1301 -0.4665 7 6 2.5825 2.2809 -0.8227 8 1 1.5576 2.2141 -1.1568 9 6 3.2191 3.5359 -0.7483 10 7 4.4597 3.6150 -0.3582 11 14 2.2842 5.0861 -1.2091 12 1 0.9015 4.7280 -1.6154 13 1 2.2350 6.0004 -0.0400 14 1 2.9728 5.7624 -2.3377 15 7 4.6558 1.0910 -0.5694 16 6 5.2484 1.2824 -1.7646 17 8 4.5788 1.5796 -2.7339 18 8 6.5826 1.1443 -1.8845 19 6 7.1267 1.4351 -3.0960 20 6 7.3025 2.7567 -3.4792 21 6 7.8605 3.0501 -4.7084 22 6 8.2343 2.0268 -5.5615 23 17 8.9292 2.3981 -7.1084 24 6 8.0545 0.7080 -5.1833 25 6 7.5018 0.4106 -3.9527 26 1 4.8756 4.4829 -0.2370 27 1 5.1963 0.9259 0.2190 28 1 7.0067 3.5557 -2.8155 29 1 8.0013 4.0788 -5.0053 30 1 8.3465 -0.0893 -5.8507 31 1 7.3613 -0.6189 -3.6581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194071116.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:32 Heat of formation + Delta-G solvation = -2.446889 kcal Electronic energy + Delta-G solvation = -22649.459594 eV Core-core repulsion = 18922.103306 eV Total energy + Delta-G solvation = -3727.356287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.035 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32257 -40.27820 -38.91473 -37.63876 -37.18350 -36.59001 -36.52908 -35.04782 -32.34199 -32.25554 -30.78702 -28.86319 -25.42993 -24.09406 -23.34092 -22.29760 -20.72037 -20.20323 -19.05871 -18.68818 -18.08844 -17.71650 -17.47547 -16.84187 -15.87854 -15.72744 -15.22679 -15.07139 -14.64369 -14.63495 -14.40460 -14.37325 -13.93497 -13.56514 -13.45886 -13.40577 -13.35676 -13.30219 -13.03905 -12.77613 -12.69366 -12.45558 -12.10841 -12.04019 -11.76158 -11.68677 -11.53957 -10.83959 -10.18986 -9.70029 -9.61706 -9.10102 -7.17019 -0.29544 0.15902 0.39413 1.01678 1.27886 1.35087 1.51230 1.56555 1.90533 2.01467 2.07684 2.19857 2.39549 2.53092 2.60212 3.31466 3.36094 3.70275 3.75940 3.81020 4.09883 4.26065 4.38909 4.51642 4.65416 4.78737 4.82910 5.06850 5.19232 5.23645 5.33590 5.36699 5.74857 5.88121 6.00916 6.30890 6.53333 7.11618 7.28303 7.47369 7.67798 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.004163 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.242632 B = 6723.581814 C = 8036.462870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C 0.331 3.669 3 C -0.316 4.316 4 C 0.315 3.685 5 N -0.546 5.546 6 C 0.375 3.625 7 C -0.351 4.351 8 H 0.107 0.893 9 C 0.046 3.954 10 N -0.737 5.737 11 Si 0.987 3.013 12 H -0.258 1.258 13 H -0.246 1.246 14 H -0.259 1.259 15 N -0.620 5.620 16 C 0.673 3.327 17 O -0.570 6.570 18 O -0.307 6.307 19 C 0.088 3.912 20 C -0.113 4.113 21 C -0.095 4.095 22 C -0.038 4.038 23 Cl -0.056 7.056 24 C -0.092 4.092 25 C -0.112 4.112 26 H 0.316 0.684 27 H 0.412 0.588 28 H 0.136 0.864 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.855 7.966 -8.964 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.232 5.232 2 C 0.024 3.976 3 C -0.334 4.334 4 C 0.008 3.992 5 N -0.229 5.229 6 C 0.273 3.727 7 C -0.378 4.378 8 H 0.125 0.875 9 C -0.183 4.183 10 N -0.356 5.356 11 Si 0.806 3.194 12 H -0.182 1.182 13 H -0.169 1.169 14 H -0.183 1.183 15 N -0.270 5.270 16 C 0.427 3.573 17 O -0.457 6.457 18 O -0.219 6.219 19 C 0.046 3.954 20 C -0.132 4.132 21 C -0.113 4.113 22 C -0.065 4.065 23 Cl -0.027 7.027 24 C -0.111 4.111 25 C -0.130 4.130 26 H 0.129 0.871 27 H 0.249 0.751 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.184 0.816 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.054 6.838 -9.043 16.548 hybrid contribution 0.167 0.751 0.244 0.807 sum 12.221 7.589 -8.798 16.863 Atomic orbital electron populations 1.81048 1.12571 1.10652 1.18950 1.24710 0.91338 0.91422 0.90170 1.12762 0.82760 0.95598 1.42315 1.25200 0.92271 0.91366 0.90332 1.81098 1.10201 1.12180 1.19464 1.16538 0.78593 0.89527 0.88072 1.20517 0.99914 0.90501 1.26825 0.87522 1.27178 0.95591 1.04456 0.91105 1.69384 1.11718 1.31829 1.22627 0.85004 0.79356 0.75163 0.79911 1.18165 1.16909 1.18296 1.41058 1.05605 1.72494 1.07891 1.17763 0.79963 0.75740 0.83799 1.90980 1.63753 1.52421 1.38517 1.84259 1.21661 1.82199 1.33808 1.18735 0.98133 0.93934 0.84639 1.21408 0.98993 0.95628 0.97131 1.21104 0.97834 1.00420 0.91981 1.21099 1.01669 0.94806 0.88890 1.98375 1.82546 1.94831 1.26921 1.21152 0.98458 0.95734 0.95729 1.21374 0.99297 0.99934 0.92436 0.87100 0.75065 0.84618 0.82157 0.81565 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.08 18.54 19.01 0.35 -25.73 16 2 C 0.33 15.18 13.96 88.33 1.23 16.41 16 3 C -0.32 -13.83 5.88 -20.09 -0.12 -13.95 16 4 C 0.31 13.95 14.80 88.32 1.31 15.25 16 5 N -0.55 -24.90 18.54 19.01 0.35 -24.55 16 6 C 0.37 15.84 5.53 38.89 0.21 16.05 16 7 C -0.35 -14.69 7.57 23.07 0.17 -14.51 16 8 H 0.11 4.60 7.11 -2.91 -0.02 4.58 16 9 C 0.05 1.72 5.07 85.58 0.43 2.15 16 10 N -0.74 -26.41 10.90 21.99 0.24 -26.17 16 11 Si 0.99 29.41 29.57 68.60 2.03 31.44 16 12 H -0.26 -8.16 7.11 99.48 0.71 -7.45 16 13 H -0.25 -6.68 7.11 99.48 0.71 -5.97 16 14 H -0.26 -7.57 7.11 99.48 0.71 -6.86 16 15 N -0.62 -24.14 3.21 -428.68 -1.37 -25.51 16 16 C 0.67 26.65 7.14 129.79 0.93 27.58 16 17 O -0.57 -25.45 15.05 19.83 0.30 -25.15 16 18 O -0.31 -10.67 10.08 0.31 0.00 -10.67 16 19 C 0.09 2.68 5.07 22.50 0.11 2.79 16 20 C -0.11 -3.06 9.73 22.36 0.22 -2.85 16 21 C -0.09 -2.09 9.82 22.28 0.22 -1.87 16 22 C -0.04 -0.80 6.32 22.33 0.14 -0.66 16 23 Cl -0.06 -1.00 28.95 -2.72 -0.08 -1.08 16 24 C -0.09 -1.92 9.82 22.28 0.22 -1.70 16 25 C -0.11 -2.85 9.99 22.36 0.22 -2.62 16 26 H 0.32 9.81 8.29 -92.71 -0.77 9.04 16 27 H 0.41 14.68 8.90 -92.71 -0.83 13.85 16 28 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -53.48 323.38 7.54 -45.94 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.41 Total: 19.39 kcal Atomic # 6 Polarization: 36.77 SS G_CDS: 5.31 Total: 42.08 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -0.43 Total: -101.95 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: 0.30 Total: -35.82 kcal Atomic # 14 Polarization: 29.41 SS G_CDS: 2.03 Total: 31.44 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -53.48 7.54 -45.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194071116.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.494 kcal (2) G-P(sol) polarization free energy of solvation -53.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds