Wall clock time and date at job start Tue Mar 31 2020 12:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46831 * 2 1 4 4 C 1.53005 * 109.46831 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46929 * 179.97438 * 4 3 2 6 6 C 1.36700 * 120.00185 * 263.21802 * 5 4 3 7 7 H 1.08003 * 120.00023 * 137.53899 * 6 5 4 8 8 C 1.39165 * 120.00075 * 317.54021 * 6 5 4 9 9 N 1.31287 * 120.00105 * 345.81211 * 8 6 5 10 10 Si 1.86807 * 119.99850 * 165.80997 * 8 6 5 11 11 H 1.48500 * 109.46861 * 89.99918 * 10 8 6 12 12 H 1.48496 * 109.47007 * 209.99982 * 10 8 6 13 13 H 1.48500 * 109.46925 * 330.00018 * 10 8 6 14 14 C 1.34778 * 119.99995 * 83.22016 * 5 4 3 15 15 O 1.21554 * 119.99802 * 354.85697 * 14 5 4 16 16 C 1.48154 * 120.00378 * 175.13023 * 14 5 4 17 17 N 1.33276 * 120.56016 * 354.31471 * 16 14 5 18 18 C 1.31504 * 120.77173 * 180.02562 * 17 16 14 19 19 N 1.31936 * 121.98298 * 0.02562 * 18 17 16 20 20 C 1.32297 * 121.05525 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.44226 * 179.97438 * 20 19 18 22 22 C 1.39105 * 119.10751 * 359.72157 * 20 19 18 23 23 Cl 1.73600 * 120.89676 * 180.27607 * 22 20 19 24 24 H 1.09000 * 109.47080 * 59.99640 * 1 2 3 25 25 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46759 * 299.99892 * 1 2 3 27 27 H 1.08997 * 109.46759 * 240.00108 * 2 1 3 28 28 H 1.08998 * 109.47289 * 119.99853 * 2 1 3 29 29 H 1.08997 * 109.47361 * 60.00477 * 3 2 1 30 30 H 1.09000 * 109.47583 * 300.00052 * 3 2 1 31 31 H 1.09004 * 109.46736 * 60.00462 * 4 3 2 32 32 H 1.08998 * 109.47289 * 299.99853 * 4 3 2 33 33 H 0.96997 * 119.99593 * 180.02562 * 9 8 6 34 34 H 1.07998 * 119.01277 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.4184 3.4209 -1.1757 7 1 4.1302 4.4430 -1.3728 8 6 5.1565 2.7120 -2.1188 9 7 5.7431 1.5866 -1.7824 10 14 5.3124 3.3615 -3.8633 11 1 6.5038 4.2428 -3.9587 12 1 5.4628 2.2224 -4.8040 13 1 4.0947 4.1357 -4.2139 14 6 4.1525 3.5058 1.1587 15 8 3.7454 3.0094 2.1909 16 6 4.7467 4.8629 1.1734 17 7 5.2935 5.3752 0.0712 18 6 5.8224 6.5791 0.0797 19 7 5.8377 7.3281 1.1658 20 6 5.3159 6.8942 2.3014 21 17 5.3452 7.8928 3.7211 22 6 4.7386 5.6292 2.3411 23 17 4.0340 5.0164 3.8046 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9289 0.8908 33 1 6.2577 1.0927 -2.4397 34 1 6.2582 6.9662 -0.8295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195022991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:21 Heat of formation + Delta-G solvation = 13.817019 kcal Electronic energy + Delta-G solvation = -22258.760404 eV Core-core repulsion = 18665.509618 eV Total energy + Delta-G solvation = -3593.250787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.75778 -38.53106 -36.79312 -36.25498 -35.40510 -34.19614 -33.23112 -31.68288 -31.24564 -28.63637 -25.51637 -24.83281 -24.08350 -22.73038 -20.62638 -19.78331 -18.38682 -17.76009 -16.28638 -15.89198 -15.49180 -15.15134 -14.83888 -14.61388 -14.30701 -13.93556 -13.88423 -13.06427 -12.93616 -12.33681 -12.17582 -12.04451 -11.70878 -11.57607 -11.54157 -11.39292 -11.15445 -10.96600 -10.70308 -10.68091 -10.54976 -10.45176 -10.37580 -10.00477 -9.85045 -9.30927 -9.11623 -8.87945 -8.36978 -7.61420 -6.57152 -4.14741 0.77096 0.95015 1.65079 2.35236 3.03583 3.13134 3.16000 3.47553 3.88681 4.11933 4.29282 4.33831 4.61453 4.84736 5.04587 5.22738 5.43641 5.47622 5.60279 5.90217 6.02166 6.19737 6.28683 6.32021 6.37890 6.50551 6.61106 6.75323 6.92651 6.97774 7.22571 7.35366 7.72146 8.18683 8.28439 8.86610 9.20914 9.66732 10.43268 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.005672 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.892323 B = 4935.411033 C = 6790.077745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.391 5.391 6 C -0.287 4.287 7 H 0.110 0.890 8 C 0.044 3.956 9 N -0.849 5.849 10 Si 0.922 3.078 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.483 3.517 15 O -0.578 6.578 16 C 0.183 3.817 17 N -0.435 5.435 18 C 0.295 3.705 19 N -0.517 5.517 20 C 0.214 3.786 21 Cl -0.014 7.014 22 C -0.105 4.105 23 Cl -0.001 7.001 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.274 0.726 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 4.565 2.259 5.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.169 4.169 4 C -0.005 4.005 5 N -0.106 5.106 6 C -0.418 4.418 7 H 0.127 0.873 8 C -0.164 4.164 9 N -0.484 5.484 10 Si 0.748 3.252 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.272 3.728 15 O -0.463 6.463 16 C 0.035 3.965 17 N -0.151 5.151 18 C 0.008 3.992 19 N -0.236 5.236 20 C 0.040 3.960 21 Cl 0.015 6.985 22 C -0.140 4.140 23 Cl 0.028 6.972 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.513 4.472 2.097 5.542 hybrid contribution 0.071 0.226 -0.005 0.237 sum -2.442 4.698 2.092 5.693 Atomic orbital electron populations 1.21754 0.96542 1.00741 1.01544 1.21414 0.95080 0.97473 1.01677 1.21915 0.97198 0.95910 1.01836 1.21526 0.91503 0.83738 1.03696 1.43563 1.50178 1.11740 1.05109 1.19955 1.30505 0.99530 0.91792 0.87293 1.25567 0.94213 0.95859 1.00782 1.69835 1.28074 1.15203 1.35336 0.86002 0.79297 0.78686 0.81245 1.19809 1.20742 1.19072 1.17770 0.85891 0.84598 0.84544 1.90737 1.54485 1.69290 1.31805 1.22044 0.92635 0.95539 0.86300 1.69610 1.07538 1.11284 1.26665 1.25332 0.92007 0.86980 0.94919 1.67750 1.18881 1.38332 0.98643 1.21776 0.95310 0.88476 0.90439 1.98407 1.96645 1.69241 1.34244 1.22484 1.03997 0.94344 0.93173 1.98394 1.81156 1.86863 1.30756 0.93031 0.93380 0.93006 0.92234 0.92278 0.92181 0.92245 0.87759 0.92377 0.91525 0.77765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.00 16 3 C -0.13 -2.46 5.47 -26.73 -0.15 -2.60 16 4 C 0.12 2.60 4.78 -4.04 -0.02 2.58 16 5 N -0.39 -9.29 2.50 -115.78 -0.29 -9.58 16 6 C -0.29 -6.76 7.36 -15.04 -0.11 -6.87 16 7 H 0.11 2.53 6.33 -52.48 -0.33 2.20 16 8 C 0.04 1.02 5.03 -17.44 -0.09 0.93 16 9 N -0.85 -20.75 11.48 55.51 0.64 -20.11 16 10 Si 0.92 18.15 29.58 -169.99 -5.03 13.12 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 13 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 14 C 0.48 11.51 7.55 -12.19 -0.09 11.42 16 15 O -0.58 -14.24 13.67 5.32 0.07 -14.17 16 16 C 0.18 3.95 6.66 -82.63 -0.55 3.40 16 17 N -0.43 -8.83 6.73 -11.16 -0.08 -8.90 16 18 C 0.29 4.97 12.27 -92.28 -1.13 3.83 16 19 N -0.52 -8.86 10.42 -11.66 -0.12 -8.98 16 20 C 0.21 3.75 7.34 -17.03 -0.13 3.62 16 21 Cl -0.01 -0.20 28.29 -51.86 -1.47 -1.67 16 22 C -0.11 -2.05 6.40 -38.72 -0.25 -2.30 16 23 Cl 0.00 -0.01 25.39 -51.86 -1.32 -1.33 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.21 7.89 -51.93 -0.41 0.80 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 2.40 5.74 -51.93 -0.30 2.11 16 32 H 0.06 1.33 7.71 -51.93 -0.40 0.93 16 33 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 34 H 0.21 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -26.12 320.97 -8.59 -34.71 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.53 Total: 1.67 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -2.30 Total: 10.40 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.15 Total: -47.57 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.07 Total: -14.17 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -2.78 Total: -3.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.12 -8.59 -34.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195022991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.525 kcal (2) G-P(sol) polarization free energy of solvation -26.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds