Wall clock time and date at job start Tue Mar 31 2020 12:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46831 * 2 1 4 4 C 1.53005 * 109.46831 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46929 * 179.97438 * 4 3 2 6 6 C 1.36700 * 120.00185 * 263.21802 * 5 4 3 7 7 H 1.08003 * 120.00023 * 137.53899 * 6 5 4 8 8 C 1.39165 * 120.00075 * 317.54021 * 6 5 4 9 9 N 1.31287 * 120.00105 * 345.81211 * 8 6 5 10 10 Si 1.86807 * 119.99850 * 165.80997 * 8 6 5 11 11 H 1.48500 * 109.46861 * 89.99918 * 10 8 6 12 12 H 1.48496 * 109.47007 * 209.99982 * 10 8 6 13 13 H 1.48500 * 109.46925 * 330.00018 * 10 8 6 14 14 C 1.34778 * 119.99995 * 83.22016 * 5 4 3 15 15 O 1.21554 * 119.99802 * 354.85697 * 14 5 4 16 16 C 1.48154 * 120.00378 * 175.13023 * 14 5 4 17 17 N 1.33276 * 120.56016 * 354.31471 * 16 14 5 18 18 C 1.31504 * 120.77173 * 180.02562 * 17 16 14 19 19 N 1.31936 * 121.98298 * 0.02562 * 18 17 16 20 20 C 1.32297 * 121.05525 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.44226 * 179.97438 * 20 19 18 22 22 C 1.39105 * 119.10751 * 359.72157 * 20 19 18 23 23 Cl 1.73600 * 120.89676 * 180.27607 * 22 20 19 24 24 H 1.09000 * 109.47080 * 59.99640 * 1 2 3 25 25 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46759 * 299.99892 * 1 2 3 27 27 H 1.08997 * 109.46759 * 240.00108 * 2 1 3 28 28 H 1.08998 * 109.47289 * 119.99853 * 2 1 3 29 29 H 1.08997 * 109.47361 * 60.00477 * 3 2 1 30 30 H 1.09000 * 109.47583 * 300.00052 * 3 2 1 31 31 H 1.09004 * 109.46736 * 60.00462 * 4 3 2 32 32 H 1.08998 * 109.47289 * 299.99853 * 4 3 2 33 33 H 0.96997 * 119.99593 * 180.02562 * 9 8 6 34 34 H 1.07998 * 119.01277 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.4184 3.4209 -1.1757 7 1 4.1302 4.4430 -1.3728 8 6 5.1565 2.7120 -2.1188 9 7 5.7431 1.5866 -1.7824 10 14 5.3124 3.3615 -3.8633 11 1 6.5038 4.2428 -3.9587 12 1 5.4628 2.2224 -4.8040 13 1 4.0947 4.1357 -4.2139 14 6 4.1525 3.5058 1.1587 15 8 3.7454 3.0094 2.1909 16 6 4.7467 4.8629 1.1734 17 7 5.2935 5.3752 0.0712 18 6 5.8224 6.5791 0.0797 19 7 5.8377 7.3281 1.1658 20 6 5.3159 6.8942 2.3014 21 17 5.3452 7.8928 3.7211 22 6 4.7386 5.6292 2.3411 23 17 4.0340 5.0164 3.8046 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9289 0.8908 33 1 6.2577 1.0927 -2.4397 34 1 6.2582 6.9662 -0.8295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195022991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:19 Heat of formation + Delta-G solvation = 1.833411 kcal Electronic energy + Delta-G solvation = -22259.280053 eV Core-core repulsion = 18665.509618 eV Total energy + Delta-G solvation = -3593.770435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.28015 -40.26770 -38.14559 -37.76037 -37.09377 -35.69414 -34.73787 -33.40726 -32.75360 -30.11957 -27.20613 -26.43009 -25.54501 -24.23103 -22.03666 -21.48808 -20.04797 -19.27327 -17.92932 -17.40640 -17.07103 -16.72363 -16.44969 -16.19149 -15.83554 -15.48680 -15.34879 -14.67371 -14.35831 -13.80487 -13.60822 -13.53580 -13.16643 -13.08284 -13.00808 -12.90954 -12.75313 -12.47045 -12.14486 -12.09823 -12.00246 -11.93285 -11.78529 -11.49401 -11.39778 -10.97130 -10.85037 -10.37128 -10.03760 -9.39197 -8.30141 -5.97249 -0.77257 -0.51248 0.27085 0.84722 1.47768 1.53714 1.64067 1.87308 2.26369 2.50062 2.65332 2.90105 3.08878 3.20450 3.46484 3.74527 4.09311 4.15433 4.30877 4.38549 4.57163 4.87835 4.88446 4.94196 5.02456 5.07917 5.19888 5.38188 5.43614 5.45313 5.53932 5.59719 5.96261 6.47184 6.74080 7.10669 7.42553 7.88002 8.71875 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.005672 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.892323 B = 4935.411033 C = 6790.077745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.117 4.117 4 C 0.122 3.878 5 N -0.404 5.404 6 C -0.303 4.303 7 H 0.110 0.890 8 C 0.009 3.991 9 N -0.887 5.887 10 Si 0.982 3.018 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.260 1.260 14 C 0.471 3.529 15 O -0.596 6.596 16 C 0.167 3.833 17 N -0.455 5.455 18 C 0.302 3.698 19 N -0.506 5.506 20 C 0.219 3.781 21 Cl 0.018 6.982 22 C -0.115 4.115 23 Cl 0.002 6.998 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.274 0.726 34 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 6.184 1.702 7.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.155 4.155 4 C -0.001 4.001 5 N -0.119 5.119 6 C -0.433 4.433 7 H 0.128 0.872 8 C -0.195 4.195 9 N -0.524 5.524 10 Si 0.805 3.195 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.184 1.184 14 C 0.260 3.740 15 O -0.483 6.483 16 C 0.019 3.981 17 N -0.171 5.171 18 C 0.016 3.984 19 N -0.224 5.224 20 C 0.044 3.956 21 Cl 0.047 6.953 22 C -0.150 4.150 23 Cl 0.031 6.969 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.606 6.100 1.531 6.808 hybrid contribution 0.144 -0.104 0.355 0.397 sum -2.462 5.997 1.886 6.751 Atomic orbital electron populations 1.21713 0.94326 1.02284 1.01738 1.21396 0.96968 0.95022 1.01873 1.21786 0.94909 0.98051 1.00777 1.21474 0.93406 0.83223 1.01953 1.43755 1.50617 1.12112 1.05379 1.20061 1.31487 0.99790 0.91976 0.87239 1.26269 0.93551 0.95874 1.03816 1.69936 1.29438 1.16612 1.36395 0.85096 0.79454 0.78029 0.76909 1.19216 1.20968 1.18387 1.18210 0.85659 0.85728 0.84400 1.90694 1.55031 1.70191 1.32344 1.21806 0.93489 0.95111 0.87669 1.69534 1.08137 1.12891 1.26549 1.26136 0.90559 0.85588 0.96123 1.67949 1.18075 1.37799 0.98545 1.21984 0.93978 0.88159 0.91433 1.98422 1.96365 1.68041 1.32500 1.22533 1.04563 0.95063 0.92792 1.98390 1.81184 1.87012 1.30341 0.92554 0.91165 0.93117 0.91778 0.92371 0.93761 0.92500 0.88925 0.94405 0.91574 0.73607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.11 -3.56 5.93 30.60 0.18 -3.37 16 3 C -0.12 -4.52 5.47 30.60 0.17 -4.35 16 4 C 0.12 5.60 4.78 86.38 0.41 6.01 16 5 N -0.40 -19.74 2.50 -638.50 -1.59 -21.33 16 6 C -0.30 -14.46 7.36 84.16 0.62 -13.84 16 7 H 0.11 5.09 6.33 -2.91 -0.02 5.07 16 8 C 0.01 0.43 5.03 85.00 0.43 0.86 16 9 N -0.89 -44.35 11.48 21.70 0.25 -44.10 16 10 Si 0.98 36.83 29.58 68.60 2.03 38.86 16 11 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 12 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 13 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 14 C 0.47 22.98 7.55 86.88 0.66 23.64 16 15 O -0.60 -30.20 13.67 -3.88 -0.05 -30.25 16 16 C 0.17 7.20 6.66 41.91 0.28 7.48 16 17 N -0.45 -18.02 6.73 -189.22 -1.27 -19.30 16 18 C 0.30 9.41 12.27 180.93 2.22 11.63 16 19 N -0.51 -15.92 10.42 -190.80 -1.99 -17.91 16 20 C 0.22 7.26 7.34 84.83 0.62 7.88 16 21 Cl 0.02 0.49 28.29 -2.72 -0.08 0.41 16 22 C -0.11 -4.38 6.40 22.82 0.15 -4.24 16 23 Cl 0.00 0.06 25.39 -2.72 -0.07 -0.01 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.83 7.89 -2.39 -0.02 1.81 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 4.46 5.74 -2.38 -0.01 4.44 16 32 H 0.04 1.83 7.71 -2.39 -0.02 1.81 16 33 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 34 H 0.25 5.35 8.06 -2.91 -0.02 5.32 16 Total: -1.00 -56.68 320.97 4.81 -51.87 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.14 Total: 12.96 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 6.45 Total: 28.80 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.61 Total: -102.64 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.05 Total: -30.25 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -0.15 Total: 0.40 kcal Total: -56.68 4.81 -51.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195022991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.698 kcal (2) G-P(sol) polarization free energy of solvation -56.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds