Wall clock time and date at job start Tue Mar 31 2020 12:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99752 * 2 1 4 4 H 1.48493 * 109.47405 * 89.99189 * 3 2 1 5 5 H 1.48504 * 109.46904 * 329.99733 * 3 2 1 6 6 H 1.48498 * 109.46948 * 209.99831 * 3 2 1 7 7 C 1.38805 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00334 * 23.66472 * 7 2 1 9 9 N 1.36938 * 119.99811 * 203.65751 * 7 2 1 10 10 C 1.47421 * 125.65192 * 14.57630 * 9 7 2 11 11 C 1.55126 * 104.72560 * 155.81335 * 10 9 7 12 12 C 1.55149 * 101.48713 * 37.29325 * 11 10 9 13 13 H 1.09001 * 110.72055 * 82.69321 * 12 11 10 14 14 O 1.42902 * 110.87566 * 205.89733 * 12 11 10 15 15 C 1.35514 * 117.00071 * 205.06531 * 14 12 11 16 16 N 1.32808 * 120.50513 * 359.97438 * 15 14 12 17 17 C 1.31890 * 120.70611 * 179.97438 * 16 15 14 18 18 Cl 1.73600 * 119.11359 * 180.02562 * 17 16 15 19 19 N 1.31920 * 121.77643 * 0.02562 * 17 16 15 20 20 C 1.32489 * 120.94939 * 359.97438 * 19 17 16 21 21 C 1.38228 * 119.19362 * 359.74973 * 20 19 17 22 22 C 1.50700 * 120.81336 * 180.25260 * 21 20 19 23 23 Cl 1.80300 * 109.46890 * 270.26715 * 22 21 20 24 24 C 1.47025 * 125.64757 * 194.87481 * 9 7 2 25 25 H 0.97005 * 119.99794 * 174.69674 * 1 2 3 26 26 H 1.09009 * 110.36388 * 274.74577 * 10 9 7 27 27 H 1.09006 * 110.36678 * 37.05893 * 10 9 7 28 28 H 1.08999 * 111.19112 * 279.18959 * 11 10 9 29 29 H 1.09004 * 110.90370 * 155.27210 * 11 10 9 30 30 H 1.07996 * 120.39979 * 179.97438 * 20 19 17 31 31 H 1.09003 * 109.46473 * 30.26216 * 22 21 20 32 32 H 1.08996 * 109.47043 * 150.26923 * 22 21 20 33 33 H 1.09000 * 109.88337 * 300.44385 * 24 9 7 34 34 H 1.09000 * 109.87874 * 61.60956 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 1.4000 5 1 1.4475 2.6527 -0.7001 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5384 -2.0983 -0.3745 9 7 3.2933 -1.2516 0.4764 10 6 3.9514 -0.2080 1.2833 11 6 5.0662 -0.9553 2.0612 12 6 5.5477 -1.9813 1.0016 13 1 6.2622 -1.5229 0.3177 14 8 6.1177 -3.1318 1.6289 15 6 7.0200 -3.8416 0.9088 16 7 7.3444 -3.4665 -0.3232 17 6 8.2224 -4.1541 -1.0274 18 17 8.6164 -3.6262 -2.6335 19 7 8.8092 -5.2322 -0.5441 20 6 8.5361 -5.6671 0.6772 21 6 7.6258 -4.9732 1.4522 22 6 7.2923 -5.4322 2.8483 23 17 5.9057 -6.5831 2.7872 24 6 4.2448 -2.3518 0.2621 25 1 -0.4850 -0.8365 -0.0776 26 1 4.3835 0.5556 0.6363 27 1 3.2401 0.2399 1.9773 28 1 4.6634 -1.4603 2.9391 29 1 5.8704 -0.2739 2.3389 30 1 9.0214 -6.5510 1.0638 31 1 8.1587 -5.9299 3.2837 32 1 7.0228 -4.5708 3.4593 33 1 3.8384 -3.2779 0.6686 34 1 4.4434 -2.4678 -0.8034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222943753.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:01 Heat of formation + Delta-G solvation = 27.533663 kcal Electronic energy + Delta-G solvation = -21935.033021 eV Core-core repulsion = 18342.377033 eV Total energy + Delta-G solvation = -3592.655988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.68762 -39.25532 -37.27747 -36.78858 -36.31093 -33.95214 -33.23817 -32.34944 -29.69576 -28.21612 -27.58346 -25.10531 -23.65967 -23.30836 -21.25310 -20.48163 -19.02118 -18.46990 -17.43962 -16.53848 -16.20108 -15.52903 -15.41608 -15.05559 -14.47522 -14.34951 -14.11459 -13.89087 -13.58924 -13.47273 -13.18165 -12.53753 -12.02171 -11.87289 -11.78629 -11.71355 -11.44020 -11.14865 -11.10790 -10.82793 -10.69244 -10.61994 -10.31099 -10.09024 -9.80213 -9.62235 -9.28125 -9.22424 -8.55403 -7.14040 -6.34959 -3.26352 0.17237 0.72502 1.07913 2.09278 2.56858 3.26954 3.37374 3.49558 3.58343 3.64259 4.05313 4.19577 4.23590 4.45738 4.55727 4.83966 4.90669 4.95212 5.17310 5.18611 5.36352 5.42422 5.52995 5.75444 5.86594 6.04531 6.26093 6.37227 6.42298 6.48510 6.63456 7.00614 7.44213 7.65719 8.30597 8.99652 9.52592 10.19114 11.12475 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.004321 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.443240 B = 6477.835971 C = 7782.970766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.018 4.018 3 Si 1.063 2.937 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.286 1.286 7 C -0.327 4.327 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.123 4.123 12 C 0.071 3.929 13 H 0.100 0.900 14 O -0.275 6.275 15 C 0.410 3.590 16 N -0.557 5.557 17 C 0.410 3.590 18 Cl 0.033 6.967 19 N -0.532 5.532 20 C 0.209 3.791 21 C -0.240 4.240 22 C 0.026 3.974 23 Cl -0.167 7.167 24 C 0.124 3.876 25 H 0.263 0.737 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.186 0.814 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.037 0.963 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.456 -10.372 4.689 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.895 3.105 4 H -0.220 1.220 5 H -0.225 1.225 6 H -0.213 1.213 7 C -0.455 4.455 8 H 0.093 0.907 9 N -0.332 5.332 10 C -0.018 4.018 11 C -0.162 4.162 12 C 0.015 3.985 13 H 0.118 0.882 14 O -0.177 6.177 15 C 0.222 3.778 16 N -0.290 5.290 17 C 0.117 3.883 18 Cl 0.061 6.939 19 N -0.253 5.253 20 C 0.046 3.954 21 C -0.246 4.246 22 C -0.037 4.037 23 Cl -0.141 7.141 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.203 0.797 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.055 0.945 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 21.131 -8.467 3.973 23.108 hybrid contribution -0.068 -1.811 0.207 1.824 sum 21.063 -10.278 4.180 23.807 Atomic orbital electron populations 1.70906 1.05743 1.30029 1.49317 1.25917 0.96430 1.00832 0.98670 0.83861 0.74346 0.75940 0.76338 1.21988 1.22459 1.21272 1.20047 0.86367 0.96576 1.42470 0.90690 1.44676 1.10887 1.17580 1.60031 1.22109 0.93397 0.92634 0.93693 1.22976 0.98935 0.96284 0.97983 1.23816 0.95620 0.82886 0.96155 0.88234 1.86338 1.50790 1.40259 1.40299 1.19780 0.85029 0.87371 0.85609 1.67564 1.19133 1.35064 1.07242 1.22715 0.88090 0.87468 0.90056 1.98460 1.91782 1.88649 1.15000 1.68005 1.28149 1.14371 1.14784 1.22985 0.89844 0.95961 0.86626 1.20680 1.04828 0.98469 1.00634 1.22766 0.91609 0.96243 0.93117 1.98763 1.51060 1.65270 1.98976 1.21637 0.87931 0.93346 0.97300 0.92636 0.94596 0.91301 0.89795 0.90576 0.79720 0.87265 0.86973 0.94502 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.78 13.70 55.49 0.76 -28.01 16 2 C -0.02 -0.52 5.43 -17.43 -0.09 -0.62 16 3 Si 1.06 26.33 24.69 -169.99 -4.20 22.13 16 4 H -0.29 -6.73 6.66 56.52 0.38 -6.35 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -6.71 6.22 56.52 0.35 -6.36 16 7 C -0.33 -9.47 10.44 -15.06 -0.16 -9.62 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 9 N -0.60 -14.93 3.25 -169.93 -0.55 -15.49 16 10 C 0.11 2.26 4.71 -2.41 -0.01 2.25 16 11 C -0.12 -2.02 6.83 -24.47 -0.17 -2.19 16 12 C 0.07 1.20 3.15 -24.90 -0.08 1.12 16 13 H 0.10 1.65 7.16 -51.93 -0.37 1.28 16 14 O -0.28 -4.09 9.04 -18.24 -0.16 -4.26 16 15 C 0.41 5.56 7.50 -16.70 -0.13 5.43 16 16 N -0.56 -8.14 8.84 -11.69 -0.10 -8.25 16 17 C 0.41 5.42 8.18 -91.96 -0.75 4.67 16 18 Cl 0.03 0.39 29.27 -51.86 -1.52 -1.12 16 19 N -0.53 -6.19 10.40 -11.70 -0.12 -6.31 16 20 C 0.21 1.88 11.00 -17.27 -0.19 1.69 16 21 C -0.24 -2.45 5.31 -104.20 -0.55 -3.01 16 22 C 0.03 0.21 6.63 36.01 0.24 0.45 16 23 Cl -0.17 -1.83 29.13 -51.86 -1.51 -3.34 16 24 C 0.12 2.62 7.01 -3.06 -0.02 2.60 16 25 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 26 H 0.04 0.77 5.50 -51.92 -0.29 0.48 16 27 H 0.07 1.53 6.38 -51.93 -0.33 1.20 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.19 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.11 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.11 0.90 7.63 -51.93 -0.40 0.50 16 33 H 0.04 0.81 8.06 -51.93 -0.42 0.40 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -32.77 316.58 -8.11 -40.88 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -3.57 Total: -3.79 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.91 Total: 2.77 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.02 Total: -58.05 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.16 Total: -4.26 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.20 Total: 22.13 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -3.03 Total: -4.46 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.77 -8.11 -40.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222943753.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.417 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds