Wall clock time and date at job start Tue Mar 31 2020 12:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99752 * 2 1 4 4 H 1.48493 * 109.47405 * 89.99189 * 3 2 1 5 5 H 1.48504 * 109.46904 * 329.99733 * 3 2 1 6 6 H 1.48498 * 109.46948 * 209.99831 * 3 2 1 7 7 C 1.38805 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00334 * 23.66472 * 7 2 1 9 9 N 1.36938 * 119.99811 * 203.65751 * 7 2 1 10 10 C 1.47421 * 125.65192 * 14.57630 * 9 7 2 11 11 C 1.55126 * 104.72560 * 155.81335 * 10 9 7 12 12 C 1.55149 * 101.48713 * 37.29325 * 11 10 9 13 13 H 1.09001 * 110.72055 * 82.69321 * 12 11 10 14 14 O 1.42902 * 110.87566 * 205.89733 * 12 11 10 15 15 C 1.35514 * 117.00071 * 205.06531 * 14 12 11 16 16 N 1.32808 * 120.50513 * 359.97438 * 15 14 12 17 17 C 1.31890 * 120.70611 * 179.97438 * 16 15 14 18 18 Cl 1.73600 * 119.11359 * 180.02562 * 17 16 15 19 19 N 1.31920 * 121.77643 * 0.02562 * 17 16 15 20 20 C 1.32489 * 120.94939 * 359.97438 * 19 17 16 21 21 C 1.38228 * 119.19362 * 359.74973 * 20 19 17 22 22 C 1.50700 * 120.81336 * 180.25260 * 21 20 19 23 23 Cl 1.80300 * 109.46890 * 270.26715 * 22 21 20 24 24 C 1.47025 * 125.64757 * 194.87481 * 9 7 2 25 25 H 0.97005 * 119.99794 * 174.69674 * 1 2 3 26 26 H 1.09009 * 110.36388 * 274.74577 * 10 9 7 27 27 H 1.09006 * 110.36678 * 37.05893 * 10 9 7 28 28 H 1.08999 * 111.19112 * 279.18959 * 11 10 9 29 29 H 1.09004 * 110.90370 * 155.27210 * 11 10 9 30 30 H 1.07996 * 120.39979 * 179.97438 * 20 19 17 31 31 H 1.09003 * 109.46473 * 30.26216 * 22 21 20 32 32 H 1.08996 * 109.47043 * 150.26923 * 22 21 20 33 33 H 1.09000 * 109.88337 * 300.44385 * 24 9 7 34 34 H 1.09000 * 109.87874 * 61.60956 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 1.4000 5 1 1.4475 2.6527 -0.7001 6 1 3.5477 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5384 -2.0983 -0.3745 9 7 3.2933 -1.2516 0.4764 10 6 3.9514 -0.2080 1.2833 11 6 5.0662 -0.9553 2.0612 12 6 5.5477 -1.9813 1.0016 13 1 6.2622 -1.5229 0.3177 14 8 6.1177 -3.1318 1.6289 15 6 7.0200 -3.8416 0.9088 16 7 7.3444 -3.4665 -0.3232 17 6 8.2224 -4.1541 -1.0274 18 17 8.6164 -3.6262 -2.6335 19 7 8.8092 -5.2322 -0.5441 20 6 8.5361 -5.6671 0.6772 21 6 7.6258 -4.9732 1.4522 22 6 7.2923 -5.4322 2.8483 23 17 5.9057 -6.5831 2.7872 24 6 4.2448 -2.3518 0.2621 25 1 -0.4850 -0.8365 -0.0776 26 1 4.3835 0.5556 0.6363 27 1 3.2401 0.2399 1.9773 28 1 4.6634 -1.4603 2.9391 29 1 5.8704 -0.2739 2.3389 30 1 9.0214 -6.5510 1.0638 31 1 8.1587 -5.9299 3.2837 32 1 7.0228 -4.5708 3.4593 33 1 3.8384 -3.2779 0.6686 34 1 4.4434 -2.4678 -0.8034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222943753.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:01 Heat of formation + Delta-G solvation = 4.082597 kcal Electronic energy + Delta-G solvation = -21936.049936 eV Core-core repulsion = 18342.377033 eV Total energy + Delta-G solvation = -3593.672903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.63501 -40.48696 -38.50189 -38.01610 -37.07250 -34.87027 -34.75291 -33.85361 -31.47031 -29.80951 -28.35687 -26.49013 -25.19653 -24.17888 -22.80745 -22.10982 -20.11355 -19.76863 -19.27018 -17.65667 -17.28211 -16.99276 -16.40747 -16.24612 -15.78593 -15.41088 -15.25033 -15.09946 -15.06968 -14.67873 -14.53434 -14.18299 -13.45157 -13.16012 -13.10952 -12.90007 -12.75526 -12.65165 -12.36305 -12.30789 -11.80987 -11.56478 -11.46041 -11.43969 -11.41797 -11.32950 -10.71988 -10.70751 -10.17741 -9.24137 -8.68312 -5.53598 -0.70473 -0.17221 0.16280 1.39154 1.39375 1.47620 1.54503 1.70642 2.39170 2.50111 2.66753 3.01239 3.23263 3.29108 3.38455 3.42895 3.52023 3.64715 3.74047 3.99832 4.26006 4.38360 4.41764 4.53034 4.68164 4.69356 4.78585 4.82754 4.91315 5.09821 5.43687 5.50054 5.81044 6.04536 6.52516 6.76015 7.37194 8.03241 8.78895 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.004321 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.443240 B = 6477.835971 C = 7782.970766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 1.106 2.894 4 H -0.260 1.260 5 H -0.304 1.304 6 H -0.265 1.265 7 C -0.325 4.325 8 H 0.035 0.965 9 N -0.624 5.624 10 C 0.095 3.905 11 C -0.107 4.107 12 C 0.091 3.909 13 H 0.106 0.894 14 O -0.276 6.276 15 C 0.383 3.617 16 N -0.583 5.583 17 C 0.396 3.604 18 Cl 0.033 6.967 19 N -0.535 5.535 20 C 0.219 3.781 21 C -0.229 4.229 22 C 0.031 3.969 23 Cl -0.195 7.195 24 C 0.124 3.876 25 H 0.247 0.753 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.234 0.766 31 H 0.155 0.845 32 H 0.114 0.886 33 H 0.019 0.981 34 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.053 -10.403 6.410 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.265 4.265 3 Si 0.930 3.070 4 H -0.185 1.185 5 H -0.232 1.232 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.053 0.947 9 N -0.353 5.353 10 C -0.029 4.029 11 C -0.145 4.145 12 C 0.034 3.966 13 H 0.124 0.876 14 O -0.178 6.178 15 C 0.197 3.803 16 N -0.316 5.316 17 C 0.103 3.897 18 Cl 0.061 6.939 19 N -0.256 5.256 20 C 0.056 3.944 21 C -0.234 4.234 22 C -0.032 4.032 23 Cl -0.168 7.168 24 C -0.002 4.002 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.250 0.750 31 H 0.173 0.827 32 H 0.132 0.868 33 H 0.037 0.963 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 24.777 -8.539 5.712 26.822 hybrid contribution -1.127 -1.999 -0.367 2.324 sum 23.650 -10.537 5.345 26.437 Atomic orbital electron populations 1.71031 1.07031 1.29123 1.52286 1.27288 0.96326 1.04517 0.98332 0.83354 0.73796 0.71586 0.78279 1.18529 1.23182 1.19090 1.19887 0.88546 0.95242 1.41669 0.94745 1.44716 1.10323 1.19518 1.60722 1.22318 0.94457 0.92493 0.93644 1.22914 0.98407 0.96247 0.96963 1.23404 0.93365 0.83726 0.96088 0.87589 1.86317 1.51552 1.39912 1.40029 1.20157 0.85705 0.88601 0.85830 1.67439 1.19959 1.36181 1.08044 1.22844 0.88472 0.88117 0.90315 1.98454 1.91727 1.88762 1.14911 1.68100 1.27893 1.13649 1.15951 1.23822 0.88801 0.96428 0.85303 1.20980 1.03888 0.96876 1.01680 1.23078 0.91991 0.96310 0.91802 1.98770 1.52896 1.66199 1.98967 1.21639 0.89730 0.91695 0.97103 0.94345 0.93593 0.92308 0.89322 0.86087 0.74964 0.82672 0.86781 0.96268 0.96045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.72 13.70 21.65 0.30 -61.42 16 2 C -0.07 -4.24 5.43 84.86 0.46 -3.78 16 3 Si 1.11 52.63 24.69 68.60 1.69 54.33 16 4 H -0.26 -10.99 6.66 99.48 0.66 -10.33 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.27 -11.62 6.22 99.48 0.62 -11.01 16 7 C -0.33 -19.51 10.44 84.03 0.88 -18.63 16 8 H 0.03 2.28 8.06 -2.91 -0.02 2.25 16 9 N -0.62 -31.14 3.25 -691.54 -2.25 -33.39 16 10 C 0.09 3.82 4.71 86.93 0.41 4.23 16 11 C -0.11 -3.17 6.83 32.06 0.22 -2.95 16 12 C 0.09 2.90 3.15 31.78 0.10 3.00 16 13 H 0.11 3.29 7.16 -2.39 -0.02 3.27 16 14 O -0.28 -7.66 9.04 -88.17 -0.80 -8.45 16 15 C 0.38 9.66 7.50 84.82 0.64 10.29 16 16 N -0.58 -16.32 8.84 -303.58 -2.68 -19.00 16 17 C 0.40 9.91 8.18 180.82 1.48 11.39 16 18 Cl 0.03 0.77 29.27 -2.72 -0.08 0.70 16 19 N -0.53 -11.08 10.40 -190.93 -1.99 -13.07 16 20 C 0.22 3.10 11.00 84.59 0.93 4.03 16 21 C -0.23 -3.94 5.31 -19.59 -0.10 -4.05 16 22 C 0.03 0.38 6.63 71.24 0.47 0.85 16 23 Cl -0.19 -3.85 29.13 -2.72 -0.08 -3.93 16 24 C 0.12 5.32 7.01 86.73 0.61 5.93 16 25 H 0.25 16.24 8.73 -92.70 -0.81 15.43 16 26 H 0.05 1.80 5.50 -2.38 -0.01 1.78 16 27 H 0.06 2.49 6.38 -2.38 -0.02 2.47 16 28 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.23 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.16 0.49 8.10 -2.39 -0.02 0.47 16 32 H 0.11 1.43 7.63 -2.39 -0.02 1.41 16 33 H 0.02 0.88 8.06 -2.39 -0.02 0.86 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.57 316.58 1.18 -74.40 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 0.97 Total: -0.46 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.09 Total: 10.30 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -6.62 Total: -126.88 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.80 Total: -8.45 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 1.69 Total: 54.33 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.16 Total: -3.23 kcal Total: -75.57 1.18 -74.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222943753.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.479 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds