Wall clock time and date at job start Tue Mar 31 2020 12:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00415 * 2 1 4 4 H 1.48497 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47066 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.46655 * 60.00148 * 3 2 1 7 7 C 1.37885 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.47957 * 111.00383 * 170.00001 * 10 9 7 12 12 C 1.53937 * 86.17994 * 222.42126 * 11 10 9 13 13 O 1.42903 * 113.73581 * 138.08123 * 12 11 10 14 14 C 1.35512 * 117.00381 * 149.99673 * 13 12 11 15 15 N 1.32813 * 120.50205 * 0.02562 * 14 13 12 16 16 C 1.31892 * 120.70696 * 179.97438 * 15 14 13 17 17 Cl 1.73597 * 119.11240 * 180.02562 * 16 15 14 18 18 N 1.31912 * 121.77552 * 0.02562 * 16 15 14 19 19 C 1.32484 * 120.94956 * 359.70406 * 18 16 15 20 20 C 1.38231 * 119.19479 * 0.56741 * 19 18 16 21 21 C 1.50698 * 120.80986 * 179.71988 * 20 19 18 22 22 Cl 1.80299 * 109.47172 * 269.71899 * 21 20 19 23 23 C 1.47964 * 111.00092 * 70.63957 * 10 9 7 24 24 H 0.96993 * 119.99961 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47193 * 59.99795 * 9 7 2 26 26 H 1.08999 * 109.47307 * 300.00471 * 9 7 2 27 27 H 1.08997 * 113.76347 * 108.10265 * 11 10 9 28 28 H 1.09003 * 113.75847 * 336.73473 * 11 10 9 29 29 H 1.09004 * 113.73022 * 269.25127 * 12 11 10 30 30 H 1.08005 * 120.40149 * 180.31218 * 19 18 16 31 31 H 1.09001 * 109.46665 * 149.72255 * 21 20 19 32 32 H 1.08996 * 109.47063 * 29.72270 * 21 20 19 33 33 H 1.09003 * 113.75591 * 23.26272 * 23 10 9 34 34 H 1.09002 * 113.76320 * 251.90716 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5161 -4.9028 0.2393 12 6 2.6927 -5.2412 1.1725 13 8 2.2968 -5.8746 2.3908 14 6 3.1803 -6.7352 2.9522 15 7 4.3560 -6.9639 2.3784 16 6 5.2192 -7.8003 2.9215 17 17 6.7443 -8.0680 2.1366 18 7 4.9549 -8.4389 4.0451 19 6 3.8050 -8.2574 4.6776 20 6 2.8688 -7.3939 4.1403 21 6 1.5465 -7.1652 4.8260 22 17 0.3376 -8.3536 4.2118 23 6 2.8981 -3.7213 1.3027 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 1.4575 -5.5407 -0.6425 28 1 0.5616 -4.8001 0.7556 29 1 3.5142 -5.7556 0.6738 30 1 3.5998 -8.7811 5.5997 31 1 1.1994 -6.1532 4.6175 32 1 1.6680 -7.2934 5.9015 33 1 2.3479 -3.2730 2.1300 34 1 3.9438 -3.4151 1.2705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222944792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:59 Heat of formation + Delta-G solvation = 34.922583 kcal Electronic energy + Delta-G solvation = -21379.746106 eV Core-core repulsion = 17787.410525 eV Total energy + Delta-G solvation = -3592.335581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70224 -39.76393 -37.67399 -37.10868 -36.33595 -33.96710 -33.21225 -32.76412 -29.34275 -27.59248 -25.96654 -25.59981 -24.36644 -23.31638 -21.80489 -19.74537 -19.15660 -18.29630 -16.66261 -16.35528 -16.23771 -15.52327 -15.43763 -14.71068 -14.58264 -14.49964 -14.35913 -14.18600 -13.85654 -13.21458 -12.68888 -12.24068 -12.08478 -11.99241 -11.87763 -11.77066 -11.53787 -11.08109 -10.95714 -10.73329 -10.70400 -10.68610 -10.37335 -10.19543 -9.82236 -9.80953 -9.24124 -9.20570 -8.57337 -7.98188 -6.12027 -4.14416 0.15810 0.70764 1.04508 2.07228 2.59241 3.24798 3.25907 3.33612 3.38613 3.57004 4.05356 4.19747 4.22376 4.35050 4.47224 4.57970 4.71442 4.96549 5.20866 5.24338 5.30320 5.45506 5.73503 5.90470 6.00472 6.14893 6.25862 6.35628 6.50877 6.96388 7.09542 7.42132 7.52620 7.76712 7.98575 8.30302 8.92846 9.50598 10.99206 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003435 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.576841 B = 8149.519002 C = 9535.627424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.163 3.837 10 N -0.469 5.469 11 C 0.005 3.995 12 C 0.043 3.957 13 O -0.276 6.276 14 C 0.410 3.590 15 N -0.560 5.560 16 C 0.410 3.590 17 Cl 0.032 6.968 18 N -0.532 5.532 19 C 0.209 3.791 20 C -0.240 4.240 21 C 0.027 3.973 22 Cl -0.171 7.171 23 C 0.015 3.985 24 H 0.262 0.738 25 H 0.036 0.964 26 H 0.002 0.998 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.186 0.814 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 -18.381 11.271 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.037 3.963 10 N -0.194 5.194 11 C -0.124 4.124 12 C -0.013 4.013 13 O -0.177 6.177 14 C 0.222 3.778 15 N -0.293 5.293 16 C 0.116 3.884 17 Cl 0.060 6.940 18 N -0.254 5.254 19 C 0.046 3.954 20 C -0.246 4.246 21 C -0.037 4.037 22 Cl -0.144 7.144 23 C -0.114 4.114 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.019 0.981 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.203 0.797 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.248 -18.248 10.133 22.096 hybrid contribution -0.699 1.109 0.742 1.507 sum 6.549 -17.139 10.876 21.329 Atomic orbital electron populations 1.69960 1.06088 1.26876 1.50619 1.24989 0.94881 0.99429 0.95142 0.86424 0.80097 0.83221 0.77616 1.19608 1.20864 1.21011 1.21110 0.93517 0.89823 1.50708 0.91850 1.20240 0.90780 0.88335 0.96920 1.68634 1.21442 1.01961 1.27399 1.24264 0.95989 0.94958 0.97157 1.25286 1.00524 0.93605 0.81884 1.86447 1.38864 1.52054 1.40366 1.19802 0.85219 0.85307 0.87446 1.67493 1.03628 1.21677 1.36483 1.22696 0.89553 0.88268 0.87845 1.98458 1.22998 1.94497 1.78034 1.67996 1.21878 1.26369 1.09128 1.22995 0.85543 0.89718 0.97119 1.20697 1.00397 1.05202 0.98282 1.22794 0.85439 0.96117 0.99350 1.98749 1.61537 1.63818 1.90322 1.24187 1.01818 0.91112 0.94291 0.92826 0.94573 0.98052 0.89174 0.90660 0.85834 0.79724 0.86782 0.87182 0.90506 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.25 8.84 -34.44 -0.30 -14.56 16 8 H 0.06 1.76 7.80 -52.48 -0.41 1.35 16 9 C 0.16 4.16 4.58 -4.98 -0.02 4.14 16 10 N -0.47 -9.94 6.25 -239.99 -1.50 -11.44 16 11 C 0.01 0.09 7.81 -2.77 -0.02 0.07 16 12 C 0.04 0.68 4.38 -25.80 -0.11 0.57 16 13 O -0.28 -3.98 9.33 -18.23 -0.17 -4.15 16 14 C 0.41 5.32 7.50 -16.70 -0.13 5.19 16 15 N -0.56 -7.64 8.72 -11.70 -0.10 -7.74 16 16 C 0.41 5.09 8.18 -91.97 -0.75 4.34 16 17 Cl 0.03 0.35 29.27 -51.86 -1.52 -1.17 16 18 N -0.53 -5.92 10.40 -11.70 -0.12 -6.04 16 19 C 0.21 1.81 10.99 -17.27 -0.19 1.62 16 20 C -0.24 -2.38 5.31 -104.20 -0.55 -2.94 16 21 C 0.03 0.22 6.63 36.00 0.24 0.45 16 22 Cl -0.17 -1.73 29.13 -51.86 -1.51 -3.24 16 23 C 0.01 0.28 7.29 -2.77 -0.02 0.26 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.00 0.04 7.69 -51.93 -0.40 -0.35 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.08 1.32 7.79 -51.93 -0.40 0.91 16 29 H 0.12 1.93 6.91 -51.93 -0.36 1.57 16 30 H 0.19 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.11 1.00 7.63 -51.93 -0.40 0.60 16 32 H 0.11 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.08 1.50 7.78 -51.93 -0.40 1.10 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -30.67 328.71 -9.83 -40.50 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -3.62 Total: -3.20 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.96 Total: 0.66 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.99 Total: -50.73 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.17 Total: -4.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -3.03 Total: -4.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.67 -9.83 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222944792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.421 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds