Wall clock time and date at job start Tue Mar 31 2020 12:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00415 * 2 1 4 4 H 1.48497 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47066 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.46655 * 60.00148 * 3 2 1 7 7 C 1.37885 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.47957 * 111.00383 * 170.00001 * 10 9 7 12 12 C 1.53937 * 86.17994 * 222.42126 * 11 10 9 13 13 O 1.42903 * 113.73581 * 138.08123 * 12 11 10 14 14 C 1.35512 * 117.00381 * 149.99673 * 13 12 11 15 15 N 1.32813 * 120.50205 * 0.02562 * 14 13 12 16 16 C 1.31892 * 120.70696 * 179.97438 * 15 14 13 17 17 Cl 1.73597 * 119.11240 * 180.02562 * 16 15 14 18 18 N 1.31912 * 121.77552 * 0.02562 * 16 15 14 19 19 C 1.32484 * 120.94956 * 359.70406 * 18 16 15 20 20 C 1.38231 * 119.19479 * 0.56741 * 19 18 16 21 21 C 1.50698 * 120.80986 * 179.71988 * 20 19 18 22 22 Cl 1.80299 * 109.47172 * 269.71899 * 21 20 19 23 23 C 1.47964 * 111.00092 * 70.63957 * 10 9 7 24 24 H 0.96993 * 119.99961 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47193 * 59.99795 * 9 7 2 26 26 H 1.08999 * 109.47307 * 300.00471 * 9 7 2 27 27 H 1.08997 * 113.76347 * 108.10265 * 11 10 9 28 28 H 1.09003 * 113.75847 * 336.73473 * 11 10 9 29 29 H 1.09004 * 113.73022 * 269.25127 * 12 11 10 30 30 H 1.08005 * 120.40149 * 180.31218 * 19 18 16 31 31 H 1.09001 * 109.46665 * 149.72255 * 21 20 19 32 32 H 1.08996 * 109.47063 * 29.72270 * 21 20 19 33 33 H 1.09003 * 113.75591 * 23.26272 * 23 10 9 34 34 H 1.09002 * 113.76320 * 251.90716 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5161 -4.9028 0.2393 12 6 2.6927 -5.2412 1.1725 13 8 2.2968 -5.8746 2.3908 14 6 3.1803 -6.7352 2.9522 15 7 4.3560 -6.9639 2.3784 16 6 5.2192 -7.8003 2.9215 17 17 6.7443 -8.0680 2.1366 18 7 4.9549 -8.4389 4.0451 19 6 3.8050 -8.2574 4.6776 20 6 2.8688 -7.3939 4.1403 21 6 1.5465 -7.1652 4.8260 22 17 0.3376 -8.3536 4.2118 23 6 2.8981 -3.7213 1.3027 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 1.4575 -5.5407 -0.6425 28 1 0.5616 -4.8001 0.7556 29 1 3.5142 -5.7556 0.6738 30 1 3.5998 -8.7811 5.5997 31 1 1.1994 -6.1532 4.6175 32 1 1.6680 -7.2934 5.9015 33 1 2.3479 -3.2730 2.1300 34 1 3.9438 -3.4151 1.2705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222944792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:58 Heat of formation + Delta-G solvation = 12.800956 kcal Electronic energy + Delta-G solvation = -21380.705372 eV Core-core repulsion = 17787.410525 eV Total energy + Delta-G solvation = -3593.294846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.63207 -41.10206 -38.88837 -38.02189 -37.06685 -35.07165 -34.82803 -33.90067 -31.16719 -28.35604 -27.60384 -27.06889 -25.63917 -24.17846 -23.46508 -21.18677 -20.21567 -19.31062 -18.60091 -17.43564 -17.35620 -16.99172 -16.32363 -16.25276 -15.89275 -15.84442 -15.15458 -15.07756 -14.77941 -14.54116 -14.25210 -13.89350 -13.79680 -13.41052 -12.93179 -12.82672 -12.65592 -12.62442 -12.57554 -12.23786 -12.13508 -11.64091 -11.49203 -11.42378 -11.34140 -11.22440 -10.72516 -10.67053 -10.14942 -9.74217 -8.26740 -6.37427 -0.68290 -0.16223 0.17990 1.37574 1.38506 1.39740 1.51856 1.54392 2.36903 2.39706 2.68574 3.05820 3.09222 3.24900 3.29951 3.39358 3.46815 3.69709 3.94281 4.22042 4.40767 4.42730 4.53022 4.58071 4.63275 4.75520 4.85699 4.88899 5.05554 5.44391 5.45972 5.70724 5.83871 6.02070 6.28612 6.54015 6.76814 7.32678 8.85209 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003435 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.576841 B = 8149.519002 C = 9535.627424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.179 3.821 10 N -0.485 5.485 11 C 0.006 3.994 12 C 0.072 3.928 13 O -0.282 6.282 14 C 0.385 3.615 15 N -0.581 5.581 16 C 0.397 3.603 17 Cl 0.037 6.963 18 N -0.535 5.535 19 C 0.220 3.780 20 C -0.231 4.231 21 C 0.030 3.970 22 Cl -0.188 7.188 23 C 0.013 3.987 24 H 0.266 0.734 25 H 0.008 0.992 26 H -0.020 1.020 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.233 0.767 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.064 0.936 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -19.235 12.874 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.052 3.948 10 N -0.210 5.210 11 C -0.123 4.123 12 C 0.016 3.984 13 O -0.184 6.184 14 C 0.199 3.801 15 N -0.314 5.314 16 C 0.103 3.897 17 Cl 0.065 6.935 18 N -0.257 5.257 19 C 0.058 3.942 20 C -0.236 4.236 21 C -0.033 4.033 22 Cl -0.161 7.161 23 C -0.116 4.116 24 H 0.075 0.925 25 H 0.026 0.974 26 H -0.003 1.003 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.147 0.853 30 H 0.249 0.751 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.082 0.918 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.253 -19.132 11.745 23.918 hybrid contribution -0.980 1.262 0.323 1.630 sum 7.274 -17.870 12.068 22.757 Atomic orbital electron populations 1.70073 1.07669 1.28048 1.51285 1.25889 0.95749 1.03170 0.94473 0.85337 0.78892 0.78518 0.77913 1.18901 1.20258 1.20128 1.21410 0.93529 0.91134 1.50855 0.92175 1.19879 0.90802 0.89652 0.94451 1.68500 1.21124 1.02118 1.29211 1.24297 0.96207 0.93216 0.98543 1.24709 0.99473 0.91879 0.82345 1.86409 1.39441 1.52861 1.39716 1.20124 0.85265 0.86085 0.88676 1.67381 1.04195 1.22454 1.37365 1.22864 0.89771 0.88565 0.88463 1.98454 1.22552 1.94432 1.78085 1.68098 1.22874 1.26036 1.08649 1.23792 0.84009 0.88610 0.97807 1.20961 1.01408 1.04324 0.96941 1.23006 0.83756 0.95171 1.01365 1.98754 1.62252 1.64409 1.90723 1.24152 1.01254 0.93609 0.92619 0.92484 0.97364 1.00255 0.87219 0.91093 0.85263 0.75077 0.87634 0.82975 0.91817 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.53 -30.12 8.84 25.60 0.23 -29.89 16 8 H 0.06 3.37 7.80 -2.91 -0.02 3.35 16 9 C 0.18 9.49 4.58 85.56 0.39 9.89 16 10 N -0.49 -21.00 6.25 -916.40 -5.73 -26.73 16 11 C 0.01 0.21 7.81 86.41 0.67 0.89 16 12 C 0.07 2.28 4.38 31.24 0.14 2.42 16 13 O -0.28 -7.99 9.33 -88.15 -0.82 -8.81 16 14 C 0.38 9.52 7.50 84.82 0.64 10.15 16 15 N -0.58 -15.27 8.72 -303.59 -2.65 -17.92 16 16 C 0.40 9.29 8.18 180.82 1.48 10.77 16 17 Cl 0.04 0.77 29.27 -2.72 -0.08 0.69 16 18 N -0.54 -10.59 10.40 -190.93 -1.99 -12.57 16 19 C 0.22 3.04 10.99 84.59 0.93 3.97 16 20 C -0.23 -4.01 5.31 -19.59 -0.10 -4.12 16 21 C 0.03 0.41 6.63 71.24 0.47 0.88 16 22 Cl -0.19 -3.44 29.13 -2.72 -0.08 -3.52 16 23 C 0.01 0.48 7.29 86.40 0.63 1.11 16 24 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H -0.02 -1.14 7.69 -2.39 -0.02 -1.16 16 27 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.07 2.54 7.79 -2.39 -0.02 2.52 16 29 H 0.13 3.97 6.91 -2.38 -0.02 3.95 16 30 H 0.23 0.89 8.06 -2.91 -0.02 0.86 16 31 H 0.11 1.66 7.63 -2.39 -0.02 1.64 16 32 H 0.15 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.06 2.57 7.78 -2.39 -0.02 2.56 16 34 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -67.44 328.71 -1.96 -69.40 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: 1.14 Total: 1.74 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.94 Total: 6.87 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -10.08 Total: -112.38 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.82 Total: -8.81 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.16 Total: -2.83 kcal Total: -67.44 -1.96 -69.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222944792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.204 kcal (2) G-P(sol) polarization free energy of solvation -67.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds