Wall clock time and date at job start Tue Mar 31 2020 12:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48495 * 109.46939 * 270.00183 * 3 2 1 5 5 H 1.48500 * 109.46748 * 29.99780 * 3 2 1 6 6 H 1.48492 * 109.47091 * 150.00029 * 3 2 1 7 7 C 1.37885 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99658 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46726 * 179.97438 * 9 7 2 11 11 C 1.47960 * 110.99741 * 170.00129 * 10 9 7 12 12 C 1.53940 * 86.17915 * 222.41869 * 11 10 9 13 13 O 1.42898 * 113.73426 * 138.08066 * 12 11 10 14 14 C 1.35522 * 117.00024 * 149.99860 * 13 12 11 15 15 C 1.39318 * 120.50081 * 179.97438 * 14 13 12 16 16 C 1.38395 * 118.33553 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 120.42339 * 179.97438 * 16 15 14 18 18 N 1.32632 * 119.14591 * 0.02562 * 16 15 14 19 19 C 1.31749 * 120.94166 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.08609 * 180.02562 * 19 18 16 21 21 Cl 1.80299 * 109.47078 * 269.99944 * 20 19 18 22 22 N 1.31788 * 121.82984 * 0.02562 * 19 18 16 23 23 C 1.47967 * 110.99795 * 70.64006 * 10 9 7 24 24 H 0.97004 * 119.99935 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46820 * 60.00503 * 9 7 2 26 26 H 1.08999 * 109.47590 * 299.99712 * 9 7 2 27 27 H 1.08994 * 113.75769 * 108.10776 * 11 10 9 28 28 H 1.08988 * 113.76287 * 336.73423 * 11 10 9 29 29 H 1.09000 * 113.73249 * 269.25984 * 12 11 10 30 30 H 1.07999 * 120.83412 * 0.27647 * 15 14 13 31 31 H 1.09000 * 109.47229 * 30.00455 * 20 19 18 32 32 H 1.08999 * 109.47182 * 150.00100 * 20 19 18 33 33 H 1.09001 * 113.75522 * 23.26660 * 23 10 9 34 34 H 1.08991 * 113.75948 * 251.90285 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5162 -4.9029 0.2380 12 6 2.6935 -5.2418 1.1701 13 8 2.2985 -5.8757 2.3884 14 6 3.1826 -6.7366 2.9487 15 6 2.8727 -7.3945 4.1371 16 6 3.8086 -8.2635 4.6701 17 17 3.4792 -9.1112 6.1488 18 7 4.9608 -8.4395 4.0372 19 6 5.2216 -7.8010 2.9147 20 6 6.5440 -8.0328 2.2302 21 17 7.7545 -6.8457 2.8437 22 7 4.3580 -6.9652 2.3738 23 6 2.8992 -3.7218 1.3009 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 1.4570 -5.5403 -0.6441 28 1 0.5622 -4.8005 0.7550 29 1 3.5147 -5.7558 0.6706 30 1 1.9242 -7.2335 4.6278 31 1 6.8892 -9.0451 2.4400 32 1 6.4234 -7.9056 1.1544 33 1 2.3495 -3.2739 2.1288 34 1 3.9446 -3.4156 1.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223462789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:14 Heat of formation + Delta-G solvation = 37.117234 kcal Electronic energy + Delta-G solvation = -21104.117811 eV Core-core repulsion = 17511.877397 eV Total energy + Delta-G solvation = -3592.240413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.68487 -39.79192 -37.65351 -37.27252 -36.39147 -33.58082 -33.08505 -32.63264 -29.41418 -28.67325 -25.89736 -25.51660 -24.25073 -23.34617 -21.80993 -19.74101 -18.75889 -18.28183 -16.61347 -16.31556 -16.07984 -15.78305 -15.52586 -15.01468 -14.72435 -14.52295 -14.23465 -14.02082 -13.98260 -13.26852 -12.65044 -12.36294 -12.20142 -12.05244 -11.87967 -11.72194 -11.43995 -11.00567 -10.86844 -10.79973 -10.77185 -10.64875 -10.38017 -10.19397 -9.92388 -9.81372 -9.32096 -9.25433 -8.56090 -7.98617 -6.11354 -4.13774 0.18241 0.61420 1.10107 1.87777 2.66658 3.19116 3.28239 3.29009 3.34214 3.38110 3.73092 4.33095 4.36780 4.53274 4.57719 4.72084 4.73975 4.83068 5.00870 5.24083 5.26268 5.35997 5.73950 5.90516 5.99676 6.16800 6.27846 6.37070 6.51110 7.00210 7.10067 7.48712 7.52322 7.76829 7.98914 8.30596 8.93146 9.51176 10.99829 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.002985 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.661573 B = 9377.698627 C =10311.073636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.163 3.837 10 N -0.469 5.469 11 C 0.004 3.996 12 C 0.044 3.956 13 O -0.279 6.279 14 C 0.393 3.607 15 C -0.228 4.228 16 C 0.247 3.753 17 Cl -0.002 7.002 18 N -0.527 5.527 19 C 0.361 3.639 20 C 0.033 3.967 21 Cl -0.143 7.143 22 N -0.553 5.553 23 C 0.014 3.986 24 H 0.263 0.737 25 H 0.036 0.964 26 H 0.002 0.998 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.166 0.834 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 -20.316 8.463 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.037 3.963 10 N -0.194 5.194 11 C -0.125 4.125 12 C -0.012 4.012 13 O -0.181 6.181 14 C 0.206 3.794 15 C -0.253 4.253 16 C 0.078 3.922 17 Cl 0.026 6.974 18 N -0.250 5.250 19 C 0.093 3.907 20 C -0.032 4.032 21 Cl -0.117 7.117 22 N -0.284 5.284 23 C -0.115 4.115 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.184 0.816 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.611 -20.060 7.649 23.522 hybrid contribution -0.955 1.141 1.214 1.920 sum 8.656 -18.919 8.863 22.614 Atomic orbital electron populations 1.69952 1.06094 1.26985 1.50553 1.24991 0.94894 0.99446 0.95129 0.86465 0.79719 0.82845 0.78239 1.20497 1.21208 1.19784 1.21069 0.93493 0.89829 1.50821 0.91881 1.20239 0.90787 0.88342 0.96900 1.68641 1.21363 1.01930 1.27514 1.24274 0.96037 0.95072 0.97134 1.25262 1.00384 0.93661 0.81857 1.86445 1.39063 1.52162 1.40431 1.19953 0.85901 0.85720 0.87862 1.21658 1.04025 1.01781 0.97820 1.21577 0.89771 0.91054 0.89831 1.98446 1.93796 1.75737 1.29379 1.67588 1.20155 1.27423 1.09813 1.22346 0.94270 0.86851 0.87240 1.22864 0.83581 0.96310 1.00417 1.98767 1.59321 1.63508 1.90083 1.67872 1.03650 1.20563 1.36333 1.24193 1.01858 0.91182 0.94231 0.92774 0.94596 0.98038 0.89179 0.90716 0.85855 0.81594 0.85683 0.85540 0.90478 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -14.32 8.84 -34.44 -0.30 -14.62 16 8 H 0.06 1.75 7.80 -52.49 -0.41 1.34 16 9 C 0.16 4.17 4.58 -4.97 -0.02 4.15 16 10 N -0.47 -9.89 6.25 -239.96 -1.50 -11.39 16 11 C 0.00 0.07 7.81 -2.76 -0.02 0.04 16 12 C 0.04 0.69 4.38 -25.79 -0.11 0.58 16 13 O -0.28 -4.10 10.15 -18.26 -0.19 -4.29 16 14 C 0.39 5.16 7.53 -16.72 -0.13 5.03 16 15 C -0.23 -2.53 9.93 -39.12 -0.39 -2.92 16 16 C 0.25 2.70 7.33 -17.15 -0.13 2.57 16 17 Cl 0.00 -0.02 29.15 -51.86 -1.51 -1.53 16 18 N -0.53 -6.06 10.33 -7.92 -0.08 -6.14 16 19 C 0.36 4.06 7.02 -157.24 -1.10 2.95 16 20 C 0.03 0.27 7.09 36.01 0.26 0.52 16 21 Cl -0.14 -1.48 29.13 -51.86 -1.51 -2.99 16 22 N -0.55 -7.07 8.65 -10.80 -0.09 -7.16 16 23 C 0.01 0.27 7.30 -2.76 -0.02 0.25 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.00 0.05 7.69 -51.93 -0.40 -0.35 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.29 7.79 -51.94 -0.40 0.88 16 29 H 0.12 1.82 6.91 -51.93 -0.36 1.46 16 30 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.55 7.78 -51.93 -0.40 1.14 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -30.34 330.11 -9.91 -40.25 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.65 Total: -2.68 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.07 Total: 0.07 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.94 Total: -50.30 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.19 Total: -4.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -3.02 Total: -4.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.34 -9.91 -40.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223462789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.364 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds