Wall clock time and date at job start Tue Mar 31 2020 12:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48495 * 109.46939 * 270.00183 * 3 2 1 5 5 H 1.48500 * 109.46748 * 29.99780 * 3 2 1 6 6 H 1.48492 * 109.47091 * 150.00029 * 3 2 1 7 7 C 1.37885 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99658 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46726 * 179.97438 * 9 7 2 11 11 C 1.47960 * 110.99741 * 170.00129 * 10 9 7 12 12 C 1.53940 * 86.17915 * 222.41869 * 11 10 9 13 13 O 1.42898 * 113.73426 * 138.08066 * 12 11 10 14 14 C 1.35522 * 117.00024 * 149.99860 * 13 12 11 15 15 C 1.39318 * 120.50081 * 179.97438 * 14 13 12 16 16 C 1.38395 * 118.33553 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 120.42339 * 179.97438 * 16 15 14 18 18 N 1.32632 * 119.14591 * 0.02562 * 16 15 14 19 19 C 1.31749 * 120.94166 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.08609 * 180.02562 * 19 18 16 21 21 Cl 1.80299 * 109.47078 * 269.99944 * 20 19 18 22 22 N 1.31788 * 121.82984 * 0.02562 * 19 18 16 23 23 C 1.47967 * 110.99795 * 70.64006 * 10 9 7 24 24 H 0.97004 * 119.99935 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46820 * 60.00503 * 9 7 2 26 26 H 1.08999 * 109.47590 * 299.99712 * 9 7 2 27 27 H 1.08994 * 113.75769 * 108.10776 * 11 10 9 28 28 H 1.08988 * 113.76287 * 336.73423 * 11 10 9 29 29 H 1.09000 * 113.73249 * 269.25984 * 12 11 10 30 30 H 1.07999 * 120.83412 * 0.27647 * 15 14 13 31 31 H 1.09000 * 109.47229 * 30.00455 * 20 19 18 32 32 H 1.08999 * 109.47182 * 150.00100 * 20 19 18 33 33 H 1.09001 * 113.75522 * 23.26660 * 23 10 9 34 34 H 1.08991 * 113.75948 * 251.90285 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5162 -4.9029 0.2380 12 6 2.6935 -5.2418 1.1701 13 8 2.2985 -5.8757 2.3884 14 6 3.1826 -6.7366 2.9487 15 6 2.8727 -7.3945 4.1371 16 6 3.8086 -8.2635 4.6701 17 17 3.4792 -9.1112 6.1488 18 7 4.9608 -8.4395 4.0372 19 6 5.2216 -7.8010 2.9147 20 6 6.5440 -8.0328 2.2302 21 17 7.7545 -6.8457 2.8437 22 7 4.3580 -6.9652 2.3738 23 6 2.8992 -3.7218 1.3009 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 1.4570 -5.5403 -0.6441 28 1 0.5622 -4.8005 0.7550 29 1 3.5147 -5.7558 0.6706 30 1 1.9242 -7.2335 4.6278 31 1 6.8892 -9.0451 2.4400 32 1 6.4234 -7.9056 1.1544 33 1 2.3495 -3.2739 2.1288 34 1 3.9446 -3.4156 1.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223462789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:14 Heat of formation + Delta-G solvation = 15.304839 kcal Electronic energy + Delta-G solvation = -21105.063667 eV Core-core repulsion = 17511.877397 eV Total energy + Delta-G solvation = -3593.186270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.62982 -41.12384 -38.90079 -38.09622 -37.13754 -35.06453 -34.46820 -33.68541 -31.16944 -29.51727 -27.52934 -27.02508 -25.50306 -24.20656 -23.49638 -21.18474 -19.87096 -19.26216 -18.58947 -17.40816 -17.08085 -17.04099 -16.63366 -16.27839 -16.07598 -16.00579 -15.28314 -15.04171 -14.70586 -14.62621 -14.22685 -13.90607 -13.78277 -13.41065 -13.17575 -12.86133 -12.69610 -12.58772 -12.38076 -12.20894 -11.93616 -11.68307 -11.58878 -11.49855 -11.25525 -11.16297 -10.86365 -10.67268 -10.34721 -9.73896 -8.26630 -6.37179 -0.67144 -0.32471 0.27256 1.16236 1.39308 1.40427 1.51445 1.60378 2.35691 2.37460 2.41786 2.81175 3.06333 3.10764 3.31991 3.44856 3.71328 3.94267 4.00522 4.09183 4.21455 4.36790 4.44793 4.53367 4.63718 4.71552 4.84018 4.87376 5.06521 5.42401 5.46380 5.70967 5.88526 6.02276 6.29237 6.58516 6.76929 7.32769 8.85058 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.002985 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.661573 B = 9377.698627 C =10311.073636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.178 3.822 10 N -0.483 5.483 11 C 0.005 3.995 12 C 0.074 3.926 13 O -0.287 6.287 14 C 0.374 3.626 15 C -0.223 4.223 16 C 0.243 3.757 17 Cl 0.016 6.984 18 N -0.530 5.530 19 C 0.355 3.645 20 C 0.037 3.963 21 Cl -0.163 7.163 22 N -0.564 5.564 23 C 0.009 3.991 24 H 0.266 0.734 25 H 0.010 0.990 26 H -0.022 1.022 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.184 0.816 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.059 0.941 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 -21.360 8.881 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.052 3.948 10 N -0.208 5.208 11 C -0.124 4.124 12 C 0.018 3.982 13 O -0.190 6.190 14 C 0.188 3.812 15 C -0.247 4.247 16 C 0.073 3.927 17 Cl 0.045 6.955 18 N -0.253 5.253 19 C 0.087 3.913 20 C -0.027 4.027 21 Cl -0.136 7.136 22 N -0.295 5.295 23 C -0.120 4.120 24 H 0.075 0.925 25 H 0.028 0.972 26 H -0.004 1.004 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.202 0.798 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.077 0.923 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.883 -21.136 8.078 25.109 hybrid contribution -1.352 1.319 1.174 2.224 sum 9.531 -19.818 9.251 23.858 Atomic orbital electron populations 1.70068 1.07660 1.28093 1.51280 1.25899 0.95773 1.03208 0.94518 0.85388 0.78522 0.78206 0.78573 1.19685 1.20560 1.18997 1.21391 0.93557 0.91177 1.50855 0.92136 1.19881 0.90835 0.89700 0.94430 1.68508 1.21020 1.02146 1.29084 1.24334 0.96143 0.93232 0.98694 1.24767 0.99675 0.91663 0.82100 1.86404 1.39679 1.52873 1.40030 1.20128 0.86175 0.86234 0.88710 1.21827 1.04785 1.01089 0.97035 1.21776 0.89558 0.90982 0.90341 1.98455 1.93679 1.75222 1.28127 1.67687 1.20311 1.27404 1.09877 1.22871 0.94905 0.86264 0.87225 1.23162 0.81701 0.96877 1.00984 1.98768 1.59983 1.64494 1.90381 1.67859 1.03766 1.21065 1.36808 1.24171 1.01263 0.94048 0.92547 0.92497 0.97196 1.00429 0.86632 0.91266 0.84426 0.79834 0.83137 0.83787 0.92309 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.53 -30.19 8.84 25.60 0.23 -29.96 16 8 H 0.06 3.39 7.80 -2.91 -0.02 3.37 16 9 C 0.18 9.43 4.58 85.56 0.39 9.82 16 10 N -0.48 -20.57 6.25 -916.32 -5.73 -26.30 16 11 C 0.00 0.15 7.81 86.41 0.67 0.83 16 12 C 0.07 2.25 4.38 31.24 0.14 2.39 16 13 O -0.29 -8.17 10.15 -88.25 -0.90 -9.06 16 14 C 0.37 9.31 7.53 84.80 0.64 9.95 16 15 C -0.22 -4.58 9.93 22.57 0.22 -4.35 16 16 C 0.24 4.84 7.33 84.61 0.62 5.46 16 17 Cl 0.02 0.26 29.15 -2.72 -0.08 0.18 16 18 N -0.53 -11.13 10.33 -178.97 -1.85 -12.98 16 19 C 0.36 7.28 7.02 138.77 0.97 8.25 16 20 C 0.04 0.52 7.09 71.24 0.50 1.02 16 21 Cl -0.16 -3.12 29.13 -2.72 -0.08 -3.20 16 22 N -0.56 -13.46 8.65 -300.73 -2.60 -16.07 16 23 C 0.01 0.34 7.30 86.41 0.63 0.97 16 24 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H -0.02 -1.24 7.69 -2.39 -0.02 -1.26 16 27 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.07 2.41 7.79 -2.39 -0.02 2.39 16 29 H 0.14 3.82 6.91 -2.39 -0.02 3.80 16 30 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 2.44 7.78 -2.39 -0.02 2.42 16 34 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -65.43 330.11 -2.30 -67.73 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 1.13 Total: 3.73 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.48 Total: 5.11 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -9.89 Total: -110.70 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.90 Total: -9.06 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.16 Total: -3.02 kcal Total: -65.43 -2.30 -67.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223462789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.038 kcal (2) G-P(sol) polarization free energy of solvation -65.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds