Wall clock time and date at job start Tue Mar 31 2020 11:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 O 1.42902 * 109.46960 * 240.00469 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47212 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00050 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00180 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47117 * 90.00278 * 13 11 9 15 15 H 1.48501 * 109.47010 * 210.00349 * 13 11 9 16 16 H 1.48506 * 109.47147 * 329.99935 * 13 11 9 17 17 C 1.50698 * 109.47335 * 120.00417 * 2 1 3 18 18 C 1.35416 * 126.76250 * 264.70935 * 17 2 1 19 19 C 1.41486 * 103.97970 * 179.97438 * 18 17 2 20 20 Br 1.89096 * 126.81441 * 180.02562 * 19 18 17 21 21 N 1.30261 * 106.36768 * 0.33565 * 19 18 17 22 22 O 1.20927 * 111.58261 * 359.78632 * 21 19 18 23 23 H 1.09006 * 109.47596 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47046 * 299.99764 * 1 2 3 25 25 H 1.09005 * 109.47615 * 59.99772 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 27 27 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 29 29 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 30 30 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 31 31 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 32 32 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 33 33 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 34 34 H 0.97000 * 120.00500 * 180.02562 * 12 11 9 35 35 H 1.07991 * 128.01236 * 359.97438 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7077 -0.6406 -3.4793 7 6 2.9157 0.2766 -4.6860 8 6 3.4240 -0.5469 -5.8710 9 6 3.6295 0.3567 -7.0595 10 1 3.4181 1.4126 -6.9779 11 6 4.0862 -0.1649 -8.2513 12 7 4.2660 0.6237 -9.2883 13 14 4.4510 -1.9915 -8.3926 14 1 3.2276 -2.7079 -8.8344 15 1 5.5349 -2.2044 -9.3852 16 1 4.8808 -2.5142 -7.0707 17 6 2.0323 -0.7105 1.2304 18 6 2.3968 -0.1404 2.4034 19 6 2.7835 -1.2364 3.2104 20 35 3.4094 -1.1655 4.9933 21 7 2.6290 -2.3032 2.4791 22 8 2.2129 -2.0306 1.3769 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.2536 0.6548 -2.5588 27 1 2.9319 0.9514 -2.0451 28 1 3.6539 -1.1127 -3.2149 29 1 1.9756 -1.4087 -3.7283 30 1 1.9697 0.7491 -4.9506 31 1 3.6481 1.0444 -4.4368 32 1 4.3701 -1.0190 -5.6062 33 1 2.6919 -1.3150 -6.1205 34 1 4.5870 0.2568 -10.1269 35 1 2.3932 0.9078 2.6628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224695732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:52 Heat of formation + Delta-G solvation = -0.445663 kcal Electronic energy + Delta-G solvation = -17855.325919 eV Core-core repulsion = 14709.860149 eV Total energy + Delta-G solvation = -3145.465770 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -45.46764 -38.71698 -35.17361 -34.74744 -33.49707 -32.22040 -31.19680 -30.31579 -29.07197 -25.24981 -24.06876 -23.85586 -21.63280 -21.24415 -20.09053 -18.19828 -17.94900 -16.66813 -16.63357 -16.01353 -15.79670 -14.53954 -14.24363 -14.16010 -13.93478 -13.51330 -12.87915 -12.71848 -12.63140 -12.44362 -12.39987 -11.92876 -11.85513 -11.41018 -11.34999 -10.94496 -10.77791 -10.72036 -10.25166 -10.03246 -9.89981 -9.76720 -9.68934 -9.58372 -9.17699 -8.53066 -6.03951 -4.02000 0.65832 0.90297 1.50034 2.58128 3.19533 3.32326 3.39812 3.44353 3.89793 4.41740 4.44111 4.46459 4.59139 4.68805 4.81655 5.17152 5.19968 5.21448 5.28465 5.30647 5.45120 5.56738 5.77639 5.91922 5.94217 6.28347 6.58202 6.68094 6.83194 7.03011 7.30605 7.43705 7.62878 7.80175 8.53993 9.00654 9.58879 11.09459 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.031718 B = 0.002042 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.577440 B =13709.901190 C =14082.529708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.166 3.834 3 H 0.098 0.902 4 O -0.374 6.374 5 C 0.061 3.939 6 C -0.120 4.120 7 C -0.099 4.099 8 C -0.014 4.014 9 C -0.521 4.521 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.265 1.265 17 C -0.003 4.003 18 C -0.203 4.203 19 C 0.004 3.996 20 Br 0.048 6.952 21 N -0.331 5.331 22 O 0.139 5.861 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -0.303 31.539 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.107 3.893 3 H 0.116 0.884 4 O -0.294 6.294 5 C -0.015 4.015 6 C -0.158 4.158 7 C -0.137 4.137 8 C -0.052 4.052 9 C -0.559 4.559 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.067 4.067 18 C -0.226 4.226 19 C -0.233 4.233 20 Br 0.130 6.870 21 N -0.030 5.030 22 O 0.065 5.935 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.702 -1.800 32.228 32.778 hybrid contribution 0.048 0.156 -0.442 0.471 sum -5.655 -1.643 31.786 32.327 Atomic orbital electron populations 1.22334 0.93340 1.04138 1.03397 1.20460 0.94345 0.93979 0.80552 0.88396 1.88038 1.86240 1.35557 1.19530 1.22843 0.99772 0.93237 0.85621 1.21685 1.01669 0.99207 0.93195 1.21398 1.00838 0.97838 0.93645 1.19569 0.95881 0.95981 0.93729 1.21158 1.44226 0.96227 0.94293 0.91081 1.25048 0.94966 0.97868 0.95731 1.69917 1.46861 1.35372 1.02234 0.86767 0.78260 0.86016 0.78192 1.20288 1.21431 1.18924 1.24507 1.00713 0.83536 0.97988 1.22328 1.06824 1.01249 0.92234 1.25267 1.08674 0.92016 0.97351 1.96808 1.86598 1.98563 1.05049 1.74127 1.13496 1.23123 0.92295 1.84952 1.59316 1.24135 1.25102 0.90907 0.91033 0.90388 0.92787 0.92949 0.91543 0.91423 0.92640 0.92663 0.96554 0.96960 0.92761 0.79867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.51 37.16 0.35 -0.89 16 2 C 0.17 1.45 3.21 -27.89 -0.09 1.36 16 3 H 0.10 0.63 7.79 -51.93 -0.40 0.23 16 4 O -0.37 -4.58 9.97 -38.40 -0.38 -4.97 16 5 C 0.06 0.74 5.75 37.16 0.21 0.95 16 6 C -0.12 -1.85 5.58 -26.74 -0.15 -2.00 16 7 C -0.10 -1.86 5.15 -26.74 -0.14 -2.00 16 8 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 9 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 13 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 16 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 17 C 0.00 -0.03 6.37 -35.32 -0.23 -0.25 16 18 C -0.20 -1.73 11.09 -39.35 -0.44 -2.17 16 19 C 0.00 0.04 7.84 -16.98 -0.13 -0.10 16 20 Br 0.05 0.41 34.13 -68.01 -2.32 -1.91 16 21 N -0.33 -4.20 12.08 31.68 0.38 -3.82 16 22 O 0.14 1.73 11.19 13.98 0.16 1.88 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 26 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 27 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 33 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -31.88 322.82 -7.30 -39.17 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -4.95 Total: -6.33 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.15 Total: -18.90 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 1.16 Total: -31.01 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.23 Total: -3.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -2.32 Total: -1.91 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.88 -7.30 -39.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224695732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.729 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds