Wall clock time and date at job start Tue Mar 31 2020 11:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 O 1.42902 * 109.46960 * 240.00469 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47212 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00050 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00180 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47117 * 90.00278 * 13 11 9 15 15 H 1.48501 * 109.47010 * 210.00349 * 13 11 9 16 16 H 1.48506 * 109.47147 * 329.99935 * 13 11 9 17 17 C 1.50698 * 109.47335 * 120.00417 * 2 1 3 18 18 C 1.35416 * 126.76250 * 264.70935 * 17 2 1 19 19 C 1.41486 * 103.97970 * 179.97438 * 18 17 2 20 20 Br 1.89096 * 126.81441 * 180.02562 * 19 18 17 21 21 N 1.30261 * 106.36768 * 0.33565 * 19 18 17 22 22 O 1.20927 * 111.58261 * 359.78632 * 21 19 18 23 23 H 1.09006 * 109.47596 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47046 * 299.99764 * 1 2 3 25 25 H 1.09005 * 109.47615 * 59.99772 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 27 27 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 29 29 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 30 30 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 31 31 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 32 32 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 33 33 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 34 34 H 0.97000 * 120.00500 * 180.02562 * 12 11 9 35 35 H 1.07991 * 128.01236 * 359.97438 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7077 -0.6406 -3.4793 7 6 2.9157 0.2766 -4.6860 8 6 3.4240 -0.5469 -5.8710 9 6 3.6295 0.3567 -7.0595 10 1 3.4181 1.4126 -6.9779 11 6 4.0862 -0.1649 -8.2513 12 7 4.2660 0.6237 -9.2883 13 14 4.4510 -1.9915 -8.3926 14 1 3.2276 -2.7079 -8.8344 15 1 5.5349 -2.2044 -9.3852 16 1 4.8808 -2.5142 -7.0707 17 6 2.0323 -0.7105 1.2304 18 6 2.3968 -0.1404 2.4034 19 6 2.7835 -1.2364 3.2104 20 35 3.4094 -1.1655 4.9933 21 7 2.6290 -2.3032 2.4791 22 8 2.2129 -2.0306 1.3769 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.2536 0.6548 -2.5588 27 1 2.9319 0.9514 -2.0451 28 1 3.6539 -1.1127 -3.2149 29 1 1.9756 -1.4087 -3.7283 30 1 1.9697 0.7491 -4.9506 31 1 3.6481 1.0444 -4.4368 32 1 4.3701 -1.0190 -5.6062 33 1 2.6919 -1.3150 -6.1205 34 1 4.5870 0.2568 -10.1269 35 1 2.3932 0.9078 2.6628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224695732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:50 Heat of formation + Delta-G solvation = -19.685409 kcal Electronic energy + Delta-G solvation = -17856.160217 eV Core-core repulsion = 14709.860149 eV Total energy + Delta-G solvation = -3146.300068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -46.24546 -39.54704 -36.60106 -35.55323 -34.73738 -33.88413 -31.93100 -31.22549 -30.46375 -26.71882 -24.91831 -24.62546 -23.06328 -22.07658 -21.62092 -19.03548 -18.87208 -18.66212 -17.44251 -16.92810 -16.66029 -16.27210 -15.50787 -15.12042 -14.83451 -14.62270 -14.29247 -13.94583 -13.79500 -13.36415 -13.21247 -13.13448 -12.98303 -12.82446 -12.41469 -12.32894 -11.93401 -11.74429 -11.63981 -11.42988 -11.36338 -11.26000 -10.94552 -10.81627 -10.74744 -10.47896 -8.28342 -6.31782 -0.07187 0.14345 0.79755 1.36873 1.38621 1.50781 1.90336 2.37318 2.41132 3.07266 3.16954 3.70939 3.74981 3.97055 4.08009 4.12698 4.19388 4.25261 4.46211 4.55399 4.63218 4.69614 4.81247 4.84998 4.91474 5.15156 5.16315 5.24485 5.27196 5.58561 5.66116 5.69664 6.15943 6.30687 6.76672 6.86474 7.33069 8.88255 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.031718 B = 0.002042 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.577440 B =13709.901190 C =14082.529708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.163 3.837 3 H 0.128 0.872 4 O -0.398 6.398 5 C 0.067 3.933 6 C -0.114 4.114 7 C -0.092 4.092 8 C -0.016 4.016 9 C -0.531 4.531 10 H 0.035 0.965 11 C 0.002 3.998 12 N -0.952 5.952 13 Si 0.949 3.051 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.249 1.249 17 C -0.011 4.011 18 C -0.189 4.189 19 C -0.006 4.006 20 Br 0.064 6.936 21 N -0.363 5.363 22 O 0.112 5.888 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -0.418 33.305 33.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.146 0.854 4 O -0.318 6.318 5 C -0.008 4.008 6 C -0.151 4.151 7 C -0.129 4.129 8 C -0.053 4.053 9 C -0.569 4.569 10 H 0.054 0.946 11 C -0.195 4.195 12 N -0.593 5.593 13 Si 0.773 3.227 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.172 1.172 17 C -0.075 4.075 18 C -0.212 4.212 19 C -0.242 4.242 20 Br 0.145 6.855 21 N -0.066 5.066 22 O 0.042 5.958 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.135 -1.909 34.002 34.603 hybrid contribution 0.167 0.293 -0.933 0.992 sum -5.968 -1.616 33.069 33.642 Atomic orbital electron populations 1.22333 0.92167 1.03609 1.04792 1.20796 0.95224 0.94820 0.78738 0.85426 1.87983 1.86730 1.36590 1.20457 1.22667 1.00908 0.92564 0.84693 1.21495 1.01557 0.98771 0.93315 1.21230 1.00633 0.97730 0.93332 1.19565 0.96203 0.95806 0.93745 1.21554 1.43567 0.95515 0.96298 0.94643 1.26031 0.94923 1.03186 0.95355 1.70066 1.48368 1.37806 1.03038 0.85666 0.78465 0.79674 0.78899 1.19145 1.21060 1.17209 1.24898 1.00863 0.82813 0.98963 1.22746 1.05132 1.02295 0.91037 1.25705 1.08097 0.92331 0.98108 1.96817 1.86406 1.98503 1.03793 1.74118 1.15122 1.24505 0.92867 1.84904 1.60046 1.25624 1.25263 0.92424 0.88914 0.89687 0.91091 0.91590 0.92196 0.91648 0.92429 0.92711 0.96539 0.96449 0.92557 0.76464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.51 71.98 0.68 -1.32 16 2 C 0.16 2.41 3.21 29.85 0.10 2.51 16 3 H 0.13 1.13 7.79 -2.39 -0.02 1.11 16 4 O -0.40 -8.91 9.97 -145.95 -1.45 -10.36 16 5 C 0.07 1.46 5.75 71.98 0.41 1.87 16 6 C -0.11 -3.31 5.58 30.59 0.17 -3.14 16 7 C -0.09 -3.33 5.15 30.59 0.16 -3.17 16 8 C -0.02 -0.73 4.04 29.85 0.12 -0.61 16 9 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 10 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 11 C 0.00 0.09 5.47 84.65 0.46 0.55 16 12 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 13 Si 0.95 44.80 27.47 68.60 1.88 46.68 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 17 C -0.01 -0.20 6.37 25.03 0.16 -0.04 16 18 C -0.19 -2.75 11.09 22.42 0.25 -2.50 16 19 C -0.01 -0.12 7.84 85.73 0.67 0.55 16 20 Br 0.06 0.98 34.13 -20.37 -0.70 0.29 16 21 N -0.36 -9.08 12.08 -55.00 -0.66 -9.75 16 22 O 0.11 2.76 11.19 74.57 0.83 3.59 16 23 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.89 7.87 -2.38 -0.02 0.87 16 26 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 27 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 33 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.22 1.41 8.06 -2.92 -0.02 1.39 16 Total: -1.00 -70.16 322.82 4.66 -65.50 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 1.02 Total: -0.57 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.43 Total: -35.68 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -0.36 Total: -69.45 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.62 Total: -6.77 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Atomic # 35 Polarization: 0.98 SS G_CDS: -0.70 Total: 0.29 kcal Total: -70.16 4.66 -65.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224695732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.819 kcal (2) G-P(sol) polarization free energy of solvation -70.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds