Wall clock time and date at job start Tue Mar 31 2020 11:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21303 * 120.00144 * 2 1 4 4 N 1.34778 * 120.00304 * 179.97438 * 2 1 3 5 5 C 1.40107 * 120.00234 * 184.95402 * 4 2 1 6 6 C 1.38857 * 120.00956 * 34.43623 * 5 4 2 7 7 C 1.38096 * 120.00482 * 179.97438 * 6 5 4 8 8 C 1.38693 * 120.02803 * 0.02562 * 7 6 5 9 9 O 1.35992 * 119.99106 * 179.97438 * 8 7 6 10 10 C 1.42901 * 116.99906 * 4.67709 * 9 8 7 11 11 H 1.08994 * 109.47321 * 23.28161 * 10 9 8 12 12 C 1.50700 * 109.47038 * 143.28160 * 10 9 8 13 13 H 1.07993 * 120.00417 * 5.35439 * 12 10 9 14 14 C 1.37885 * 119.99782 * 185.35635 * 12 10 9 15 15 N 1.31518 * 119.99533 * 185.30178 * 14 12 10 16 16 Si 1.86791 * 120.00109 * 5.30674 * 14 12 10 17 17 H 1.48498 * 109.47119 * 269.99531 * 16 14 12 18 18 H 1.48506 * 109.47543 * 29.99730 * 16 14 12 19 19 H 1.48505 * 109.47546 * 149.99711 * 16 14 12 20 20 C 1.53001 * 109.47211 * 263.27893 * 10 9 8 21 21 Cl 1.80303 * 109.46992 * 64.50904 * 20 10 9 22 22 C 1.38807 * 120.02388 * 0.25190 * 8 7 6 23 23 Cl 1.73605 * 120.00528 * 179.70152 * 22 8 7 24 24 C 1.38199 * 119.99070 * 359.45446 * 22 8 7 25 25 H 1.09005 * 109.47173 * 240.00116 * 1 2 3 26 26 H 1.09005 * 109.47361 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47154 * 120.00259 * 1 2 3 28 28 H 0.97001 * 119.99632 * 4.95438 * 4 2 1 29 29 H 1.08000 * 120.00133 * 359.96225 * 6 5 4 30 30 H 1.08004 * 119.98331 * 180.02562 * 7 6 5 31 31 H 0.97001 * 120.00624 * 354.99698 * 15 14 12 32 32 H 1.09005 * 109.47422 * 184.50273 * 20 10 9 33 33 H 1.08994 * 109.47360 * 304.50718 * 20 10 9 34 34 H 1.08000 * 120.01689 * 180.24869 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5780 -1.1694 0.1053 6 6 4.2181 -0.2087 0.8771 7 6 5.5952 -0.2113 0.9807 8 6 6.3396 -1.1729 0.3137 9 8 7.6956 -1.1744 0.4159 10 6 8.2801 -0.2224 1.3071 11 1 7.5460 0.0717 2.0570 12 6 9.4745 -0.8394 1.9882 13 1 9.8109 -1.8245 1.7008 14 6 10.1377 -0.1460 2.9785 15 7 11.2403 -0.6380 3.5000 16 14 9.4702 1.4918 3.5792 17 1 10.0500 2.5909 2.7661 18 1 7.9914 1.5033 3.4443 19 1 9.8386 1.6836 5.0050 20 6 8.7241 1.0103 0.5169 21 17 7.2785 1.8242 -0.1892 22 6 5.7013 -2.1302 -0.4627 23 17 6.6341 -3.3289 -1.3036 24 6 4.3229 -2.1322 -0.5622 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.6986 -2.0057 -0.0717 29 1 3.6390 0.5407 1.3962 30 1 6.0926 0.5358 1.5814 31 1 11.5475 -1.5209 3.2409 32 1 9.2414 1.7016 1.1823 33 1 9.3970 0.7053 -0.2845 34 1 3.8256 -2.8793 -1.1629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226874607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:52 Heat of formation + Delta-G solvation = -83.943115 kcal Electronic energy + Delta-G solvation = -21960.940584 eV Core-core repulsion = 18331.157848 eV Total energy + Delta-G solvation = -3629.782735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69258 -40.64700 -38.65623 -37.40390 -36.87628 -35.68822 -35.13246 -32.49833 -31.81526 -31.22019 -28.82701 -26.83840 -24.78084 -24.00271 -22.18298 -21.50209 -20.12745 -19.30957 -18.57266 -18.02009 -17.06493 -16.72345 -16.27947 -16.02322 -15.82574 -15.52357 -15.21814 -14.81177 -14.69252 -14.62890 -14.29710 -14.18509 -13.71032 -13.31298 -13.13058 -13.00741 -12.80198 -12.68914 -12.52290 -12.29130 -11.88249 -11.85783 -11.60105 -11.27362 -11.09930 -11.01469 -10.81864 -10.60908 -9.86252 -9.02587 -8.66559 -6.67998 0.10461 0.19882 1.13105 1.23166 1.35359 1.42570 1.56429 1.59428 2.12185 2.28155 2.38749 2.62215 2.86084 3.70524 3.79766 3.91196 3.97372 4.04751 4.08108 4.24962 4.36907 4.56033 4.65034 4.67573 4.70736 4.83361 5.05982 5.12699 5.19682 5.30996 5.41107 5.73204 5.82796 6.20239 6.47193 6.60967 7.12886 7.18208 8.42543 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.004891 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.245010 B = 5723.728473 C = 6738.573495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.501 3.499 3 O -0.580 6.580 4 N -0.655 5.655 5 C 0.111 3.889 6 C -0.082 4.082 7 C -0.178 4.178 8 C 0.119 3.881 9 O -0.306 6.306 10 C 0.187 3.813 11 H 0.052 0.948 12 C -0.605 4.605 13 H 0.035 0.965 14 C -0.001 4.001 15 N -0.917 5.917 16 Si 1.060 2.940 17 H -0.247 1.247 18 H -0.247 1.247 19 H -0.273 1.273 20 C -0.049 4.049 21 Cl -0.199 7.199 22 C -0.071 4.071 23 Cl -0.062 7.062 24 C -0.089 4.089 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.432 0.568 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.261 0.739 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.387 -1.301 -7.052 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.292 3.708 3 O -0.459 6.459 4 N -0.303 5.303 5 C 0.017 3.983 6 C -0.102 4.102 7 C -0.197 4.197 8 C 0.072 3.928 9 O -0.219 6.219 10 C 0.130 3.870 11 H 0.070 0.930 12 C -0.642 4.642 13 H 0.053 0.947 14 C -0.202 4.202 15 N -0.551 5.551 16 Si 0.879 3.121 17 H -0.172 1.172 18 H -0.171 1.171 19 H -0.199 1.199 20 C -0.112 4.112 21 Cl -0.173 7.173 22 C -0.099 4.099 23 Cl -0.033 7.033 24 C -0.109 4.109 25 H 0.136 0.864 26 H 0.109 0.891 27 H 0.137 0.863 28 H 0.272 0.728 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -21.573 0.518 -6.257 22.468 hybrid contribution 0.508 -1.857 -0.967 2.155 sum -21.065 -1.340 -7.224 22.310 Atomic orbital electron populations 1.21943 0.86348 1.06540 1.07066 1.22017 0.92798 0.82305 0.73727 1.90774 1.71977 1.33162 1.49991 1.43454 1.03245 1.10961 1.72667 1.17349 0.84562 0.97686 0.98734 1.20961 0.93139 0.98758 0.97324 1.21292 0.94762 0.99991 1.03701 1.19098 0.84079 0.94170 0.95502 1.86204 1.16285 1.57408 1.62043 1.20730 0.93747 0.85276 0.87212 0.93047 1.22051 1.15282 1.04943 1.21972 0.94659 1.27066 0.93104 1.07197 0.92849 1.70904 1.20625 1.18497 1.45056 0.83889 0.77834 0.72181 0.78189 1.17203 1.17114 1.19879 1.25825 0.88807 0.96018 1.00501 1.98683 1.48320 1.82975 1.87342 1.20029 0.92052 0.94859 1.02958 1.98339 1.73818 1.54806 1.76321 1.20692 0.89580 1.00940 0.99713 0.86405 0.89093 0.86302 0.72826 0.84897 0.84842 0.92928 0.88343 0.88380 0.80880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.32 71.23 0.74 -0.43 16 2 C 0.50 9.52 7.68 87.65 0.67 10.19 16 3 O -0.58 -17.78 14.83 -3.10 -0.05 -17.83 16 4 N -0.65 -10.94 5.34 -303.40 -1.62 -12.56 16 5 C 0.11 2.88 6.26 38.11 0.24 3.12 16 6 C -0.08 -2.62 8.65 22.38 0.19 -2.43 16 7 C -0.18 -6.62 7.07 22.34 0.16 -6.46 16 8 C 0.12 4.71 6.17 22.51 0.14 4.85 16 9 O -0.31 -14.11 9.15 -93.46 -0.86 -14.97 16 10 C 0.19 8.75 1.74 29.85 0.05 8.81 16 11 H 0.05 2.38 4.03 -2.39 -0.01 2.37 16 12 C -0.60 -33.50 9.24 25.60 0.24 -33.27 16 13 H 0.04 2.20 8.04 -2.91 -0.02 2.17 16 14 C 0.00 -0.05 5.43 84.66 0.46 0.41 16 15 N -0.92 -54.48 13.70 21.45 0.29 -54.18 16 16 Si 1.06 45.81 25.32 68.60 1.74 47.55 16 17 H -0.25 -9.64 6.77 99.48 0.67 -8.96 16 18 H -0.25 -9.66 6.36 99.48 0.63 -9.02 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 C -0.05 -2.04 5.94 71.98 0.43 -1.61 16 21 Cl -0.20 -7.57 25.46 -2.72 -0.07 -7.64 16 22 C -0.07 -2.39 6.33 22.40 0.14 -2.25 16 23 Cl -0.06 -2.02 28.50 -2.72 -0.08 -2.09 16 24 C -0.09 -2.26 9.74 22.40 0.22 -2.04 16 25 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 26 H 0.09 0.82 8.12 -2.38 -0.02 0.80 16 27 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.43 3.20 8.82 -92.71 -0.82 2.38 16 29 H 0.13 4.31 6.48 -2.91 -0.02 4.29 16 30 H 0.13 5.21 4.80 -2.91 -0.01 5.19 16 31 H 0.26 15.79 8.72 -92.71 -0.81 14.98 16 32 H 0.10 4.00 4.36 -2.38 -0.01 3.99 16 33 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 34 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -71.40 312.97 3.24 -68.16 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.21 Total: 14.66 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 3.67 Total: -21.10 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -1.33 Total: -66.74 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.90 Total: -32.80 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.74 Total: 47.55 kcal Atomic # 17 Polarization: -9.59 SS G_CDS: -0.15 Total: -9.73 kcal Total: -71.40 3.24 -68.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226874607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.782 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds