Wall clock time and date at job start Tue Mar 31 2020 11:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47106 * 89.99693 * 3 2 1 5 5 H 1.48502 * 109.46785 * 210.00026 * 3 2 1 6 6 H 1.48498 * 109.46892 * 329.99746 * 3 2 1 7 7 C 1.37874 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00316 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99936 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47457 * 180.02562 * 9 7 2 11 11 C 1.47481 * 110.99806 * 265.97038 * 10 9 7 12 12 C 1.53511 * 87.93384 * 221.29367 * 11 10 9 13 13 O 1.42899 * 114.16976 * 272.37673 * 12 11 10 14 14 C 1.36005 * 117.00274 * 250.58146 * 13 12 11 15 15 C 1.38688 * 119.99593 * 5.81655 * 14 13 12 16 16 C 1.38219 * 119.99696 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 119.99828 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00457 * 0.02562 * 16 15 14 19 19 O 1.35998 * 120.00274 * 180.02562 * 18 16 15 20 20 C 1.38643 * 119.99634 * 0.02562 * 18 16 15 21 21 C 1.38267 * 119.99913 * 359.72798 * 20 18 16 22 22 Cl 1.73598 * 119.99843 * 180.29532 * 21 20 18 23 23 C 1.47480 * 111.00517 * 169.99831 * 10 9 7 24 24 H 0.97000 * 119.99742 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47161 * 300.00272 * 9 7 2 26 26 H 1.08998 * 109.47670 * 59.99704 * 9 7 2 27 27 H 1.09003 * 113.47486 * 336.05938 * 11 10 9 28 28 H 1.09003 * 113.47704 * 106.52659 * 11 10 9 29 29 H 1.08998 * 114.34364 * 139.67869 * 12 11 10 30 30 H 1.08002 * 120.00080 * 359.97438 * 15 14 13 31 31 H 0.96697 * 114.00254 * 89.99673 * 19 18 16 32 32 H 1.07997 * 119.99840 * 179.97438 * 20 18 16 33 33 H 1.09000 * 113.47504 * 253.46813 * 23 10 9 34 34 H 1.09000 * 113.47348 * 23.87518 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0010 11 6 4.2680 -3.0455 1.3745 12 6 5.5416 -3.7154 0.8401 13 8 5.3424 -5.0421 0.3477 14 6 5.8643 -6.0591 1.0846 15 6 6.4471 -5.7956 2.3152 16 6 6.9771 -6.8292 3.0644 17 17 7.7060 -6.4995 4.6050 18 6 6.9265 -8.1309 2.5848 19 8 7.4475 -9.1480 3.3222 20 6 6.3448 -8.3942 1.3542 21 6 5.8101 -7.3608 0.6071 22 17 5.0750 -7.6915 -0.9304 23 6 5.4558 -2.6256 -0.2376 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 -0.8889 26 1 3.8746 -0.6801 0.8911 27 1 4.4653 -2.2359 2.0772 28 1 3.5269 -3.7542 1.7441 29 1 6.4063 -3.6257 1.4977 30 1 6.4869 -4.7828 2.6881 31 1 6.8160 -9.5570 3.9297 32 1 6.3058 -9.4068 0.9809 33 1 5.7213 -2.9784 -1.2341 34 1 5.9699 -1.7036 0.0340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227647558.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:24 Heat of formation + Delta-G solvation = -12.153303 kcal Electronic energy + Delta-G solvation = -21277.437791 eV Core-core repulsion = 17650.768095 eV Total energy + Delta-G solvation = -3626.669695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92760 -39.71442 -38.03918 -36.92324 -36.70858 -35.68501 -32.82723 -31.16534 -30.13428 -28.92705 -25.96850 -25.58191 -23.62367 -22.88203 -21.34909 -19.94761 -19.06533 -18.15973 -16.95867 -16.81095 -16.15278 -15.92176 -15.45533 -15.09188 -14.89655 -14.45248 -14.11759 -13.77375 -13.46178 -13.38398 -12.97383 -12.61388 -12.55140 -12.42320 -12.15794 -11.65905 -11.30871 -11.27650 -11.07695 -10.96964 -10.92702 -10.61525 -10.28470 -10.09833 -9.85271 -9.40961 -9.22711 -8.62441 -8.33127 -8.08554 -6.08767 -4.06744 0.50773 0.72756 1.64494 1.94719 2.81510 2.93480 3.22495 3.30881 3.31448 3.74055 4.23320 4.36603 4.39825 4.49145 4.53645 4.87569 4.91818 5.10183 5.20435 5.26655 5.34555 5.56877 5.59728 5.63610 5.78539 5.91148 5.96945 6.11092 6.34493 6.58939 7.09564 7.19235 7.22440 7.60449 7.74174 8.58032 9.02611 9.51671 11.04608 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.003216 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.341735 B = 8703.429206 C = 9712.833355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.125 3.875 10 N -0.442 5.442 11 C -0.005 4.005 12 C 0.039 3.961 13 O -0.255 6.255 14 C 0.156 3.844 15 C -0.182 4.182 16 C -0.017 4.017 17 Cl -0.048 7.048 18 C 0.081 3.919 19 O -0.481 6.481 20 C -0.086 4.086 21 C -0.056 4.056 22 Cl -0.037 7.037 23 C -0.001 4.001 24 H 0.264 0.736 25 H 0.030 0.970 26 H -0.003 1.003 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.391 0.609 32 H 0.154 0.846 33 H 0.090 0.910 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.079 -16.365 6.950 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.099 0.901 9 C -0.002 4.002 10 N -0.165 5.165 11 C -0.135 4.135 12 C -0.018 4.018 13 O -0.166 6.166 14 C 0.108 3.892 15 C -0.201 4.201 16 C -0.045 4.045 17 Cl -0.019 7.019 18 C 0.035 3.965 19 O -0.291 6.291 20 C -0.105 4.105 21 C -0.083 4.083 22 Cl -0.008 7.008 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.014 0.986 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.173 0.827 31 H 0.247 0.753 32 H 0.172 0.828 33 H 0.109 0.891 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.816 -16.426 5.995 24.259 hybrid contribution 0.454 1.570 0.995 1.914 sum 17.270 -14.856 6.990 23.829 Atomic orbital electron populations 1.69896 1.06121 1.26851 1.50862 1.24932 0.94771 0.98821 0.94884 0.86868 0.80341 0.84123 0.78448 1.20291 1.19262 1.21011 1.20940 0.88422 0.94869 1.50320 0.90101 1.20778 0.98370 0.85327 0.95711 1.69084 1.09669 1.23401 1.14317 1.24288 0.95564 0.99340 0.94278 1.23841 0.99070 0.80217 0.98666 1.86354 1.70681 1.13279 1.46289 1.18614 0.92578 0.88074 0.89919 1.21065 1.04031 1.00459 0.94579 1.21157 1.00006 0.93883 0.89419 1.98389 1.81115 1.95460 1.26932 1.17728 1.00414 0.86146 0.92220 1.84910 1.39712 1.48111 1.56349 1.21054 0.96510 0.99423 0.93509 1.20044 1.05153 0.91355 0.91787 1.98409 1.80801 1.95237 1.26313 1.24060 0.93950 0.95294 0.99755 0.92603 0.95234 0.98556 0.90267 0.89313 0.89184 0.82745 0.75312 0.82835 0.89133 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.52 9.94 -34.44 -0.34 -14.86 16 8 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.13 2.96 3.64 -4.98 -0.02 2.94 16 10 N -0.44 -9.08 6.32 -246.10 -1.55 -10.63 16 11 C -0.01 -0.09 7.55 -7.55 -0.06 -0.15 16 12 C 0.04 0.53 4.06 -26.20 -0.11 0.43 16 13 O -0.25 -3.77 9.64 -19.76 -0.19 -3.96 16 14 C 0.16 1.97 6.67 -39.22 -0.26 1.71 16 15 C -0.18 -1.98 8.80 -39.42 -0.35 -2.32 16 16 C -0.02 -0.17 6.33 -39.38 -0.25 -0.42 16 17 Cl -0.05 -0.46 28.50 -51.86 -1.48 -1.93 16 18 C 0.08 0.77 6.70 -39.22 -0.26 0.51 16 19 O -0.48 -3.80 12.96 -19.74 -0.26 -4.06 16 20 C -0.09 -0.81 9.76 -39.42 -0.38 -1.20 16 21 C -0.06 -0.65 6.33 -39.38 -0.25 -0.90 16 22 Cl -0.04 -0.45 28.50 -51.86 -1.48 -1.93 16 23 C 0.00 -0.02 7.52 -7.55 -0.06 -0.08 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 25 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 26 H 0.00 -0.07 6.73 -51.93 -0.35 -0.42 16 27 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.09 0.95 5.90 -51.93 -0.31 0.65 16 30 H 0.16 1.50 5.88 -52.49 -0.31 1.19 16 31 H 0.39 1.39 9.06 45.56 0.41 1.80 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -32.60 321.63 -9.01 -41.61 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.58 Total: -1.08 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.43 Total: -12.49 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.78 Total: -37.44 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.45 Total: -8.02 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -2.96 Total: -3.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.60 -9.01 -41.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227647558.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.456 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds