Wall clock time and date at job start Tue Mar 31 2020 11:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47106 * 89.99693 * 3 2 1 5 5 H 1.48502 * 109.46785 * 210.00026 * 3 2 1 6 6 H 1.48498 * 109.46892 * 329.99746 * 3 2 1 7 7 C 1.37874 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00316 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99936 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47457 * 180.02562 * 9 7 2 11 11 C 1.47481 * 110.99806 * 265.97038 * 10 9 7 12 12 C 1.53511 * 87.93384 * 221.29367 * 11 10 9 13 13 O 1.42899 * 114.16976 * 272.37673 * 12 11 10 14 14 C 1.36005 * 117.00274 * 250.58146 * 13 12 11 15 15 C 1.38688 * 119.99593 * 5.81655 * 14 13 12 16 16 C 1.38219 * 119.99696 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 119.99828 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00457 * 0.02562 * 16 15 14 19 19 O 1.35998 * 120.00274 * 180.02562 * 18 16 15 20 20 C 1.38643 * 119.99634 * 0.02562 * 18 16 15 21 21 C 1.38267 * 119.99913 * 359.72798 * 20 18 16 22 22 Cl 1.73598 * 119.99843 * 180.29532 * 21 20 18 23 23 C 1.47480 * 111.00517 * 169.99831 * 10 9 7 24 24 H 0.97000 * 119.99742 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47161 * 300.00272 * 9 7 2 26 26 H 1.08998 * 109.47670 * 59.99704 * 9 7 2 27 27 H 1.09003 * 113.47486 * 336.05938 * 11 10 9 28 28 H 1.09003 * 113.47704 * 106.52659 * 11 10 9 29 29 H 1.08998 * 114.34364 * 139.67869 * 12 11 10 30 30 H 1.08002 * 120.00080 * 359.97438 * 15 14 13 31 31 H 0.96697 * 114.00254 * 89.99673 * 19 18 16 32 32 H 1.07997 * 119.99840 * 179.97438 * 20 18 16 33 33 H 1.09000 * 113.47504 * 253.46813 * 23 10 9 34 34 H 1.09000 * 113.47348 * 23.87518 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0010 11 6 4.2680 -3.0455 1.3745 12 6 5.5416 -3.7154 0.8401 13 8 5.3424 -5.0421 0.3477 14 6 5.8643 -6.0591 1.0846 15 6 6.4471 -5.7956 2.3152 16 6 6.9771 -6.8292 3.0644 17 17 7.7060 -6.4995 4.6050 18 6 6.9265 -8.1309 2.5848 19 8 7.4475 -9.1480 3.3222 20 6 6.3448 -8.3942 1.3542 21 6 5.8101 -7.3608 0.6071 22 17 5.0750 -7.6915 -0.9304 23 6 5.4558 -2.6256 -0.2376 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 -0.8889 26 1 3.8746 -0.6801 0.8911 27 1 4.4653 -2.2359 2.0772 28 1 3.5269 -3.7542 1.7441 29 1 6.4063 -3.6257 1.4977 30 1 6.4869 -4.7828 2.6881 31 1 6.8160 -9.5570 3.9297 32 1 6.3058 -9.4068 0.9809 33 1 5.7213 -2.9784 -1.2341 34 1 5.9699 -1.7036 0.0340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227647558.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:24 Heat of formation + Delta-G solvation = -37.536607 kcal Electronic energy + Delta-G solvation = -21278.538493 eV Core-core repulsion = 17650.768095 eV Total energy + Delta-G solvation = -3627.770398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94128 -40.72636 -39.01701 -37.72238 -37.59729 -36.54410 -34.93249 -32.03979 -31.72864 -29.89501 -27.55163 -26.88955 -24.66752 -23.72293 -23.03726 -21.08176 -19.84591 -19.08835 -18.97508 -17.84178 -17.16651 -16.90791 -16.49657 -16.44518 -16.08492 -15.71530 -15.28902 -14.95036 -14.71730 -14.55003 -14.29401 -13.95012 -13.62702 -13.51160 -13.43149 -12.92418 -12.81129 -12.39688 -12.19225 -11.98051 -11.92506 -11.77319 -11.74190 -11.59259 -11.49789 -11.31803 -10.80310 -10.03113 -9.58956 -9.19992 -8.29798 -6.34758 -0.30384 -0.06433 0.85414 1.08766 1.33670 1.37307 1.47706 1.85634 2.13615 2.33546 3.02457 3.05121 3.22517 3.24351 3.46042 3.67844 3.84612 4.05024 4.25918 4.38002 4.39290 4.41721 4.55845 4.60620 4.68972 4.74115 4.81350 4.83543 4.89650 5.19838 5.47806 5.70932 5.94669 6.17497 6.55710 6.69030 6.71913 7.28715 8.87748 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.003216 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.341735 B = 8703.429206 C = 9712.833355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.244 1.244 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.025 0.975 9 C 0.136 3.864 10 N -0.487 5.487 11 C -0.011 4.011 12 C 0.061 3.939 13 O -0.280 6.280 14 C 0.134 3.866 15 C -0.177 4.177 16 C -0.024 4.024 17 Cl -0.040 7.040 18 C 0.095 3.905 19 O -0.485 6.485 20 C -0.081 4.081 21 C -0.065 4.065 22 Cl -0.051 7.051 23 C 0.001 3.999 24 H 0.267 0.733 25 H 0.030 0.970 26 H 0.013 0.987 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.167 0.833 31 H 0.412 0.588 32 H 0.175 0.825 33 H 0.090 0.910 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.182 -16.088 8.155 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.168 1.168 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.043 0.957 9 C 0.009 3.991 10 N -0.210 5.210 11 C -0.140 4.140 12 C 0.005 3.995 13 O -0.193 6.193 14 C 0.087 3.913 15 C -0.197 4.197 16 C -0.052 4.052 17 Cl -0.011 7.011 18 C 0.048 3.952 19 O -0.298 6.298 20 C -0.100 4.100 21 C -0.093 4.093 22 Cl -0.022 7.022 23 C -0.128 4.128 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.184 0.816 31 H 0.272 0.728 32 H 0.192 0.808 33 H 0.108 0.892 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.936 -16.193 7.220 26.679 hybrid contribution -0.535 1.256 0.697 1.533 sum 19.401 -14.937 7.917 25.733 Atomic orbital electron populations 1.70080 1.08434 1.28238 1.52470 1.26000 0.95703 1.03580 0.94151 0.85600 0.79428 0.77793 0.79414 1.18635 1.16768 1.20944 1.21229 0.91509 0.92927 1.50242 0.95678 1.20537 0.94706 0.87751 0.96142 1.68961 1.13501 1.21430 1.17109 1.24359 0.96912 0.99763 0.92982 1.23668 0.98469 0.79640 0.97735 1.86315 1.71714 1.13944 1.47309 1.18771 0.94012 0.87804 0.90760 1.21127 1.03425 1.01249 0.93853 1.21261 1.00108 0.94091 0.89746 1.98395 1.80944 1.95459 1.26334 1.17753 0.98976 0.86368 0.92098 1.84861 1.40592 1.47643 1.56689 1.21241 0.95693 0.99835 0.93215 1.20241 1.05693 0.91777 0.91557 1.98401 1.81182 1.95263 1.27398 1.24153 0.90786 0.97191 1.00670 0.92398 0.95185 0.96887 0.88714 0.91402 0.85095 0.81608 0.72789 0.80799 0.89152 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.96 43.20 27.47 68.60 1.88 45.08 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.52 -30.83 9.94 25.60 0.25 -30.58 16 8 H 0.02 1.70 8.06 -2.91 -0.02 1.68 16 9 C 0.14 6.36 3.64 85.56 0.31 6.67 16 10 N -0.49 -19.97 6.32 -932.92 -5.89 -25.86 16 11 C -0.01 -0.36 7.55 83.57 0.63 0.27 16 12 C 0.06 1.57 4.06 30.94 0.13 1.70 16 13 O -0.28 -8.11 9.64 -93.61 -0.90 -9.02 16 14 C 0.13 3.21 6.67 22.50 0.15 3.36 16 15 C -0.18 -3.47 8.80 22.37 0.20 -3.28 16 16 C -0.02 -0.44 6.33 22.40 0.14 -0.30 16 17 Cl -0.04 -0.67 28.50 -2.72 -0.08 -0.74 16 18 C 0.09 1.55 6.70 22.50 0.15 1.70 16 19 O -0.48 -6.21 12.96 -93.53 -1.21 -7.42 16 20 C -0.08 -1.38 9.76 22.37 0.22 -1.16 16 21 C -0.06 -1.46 6.33 22.40 0.14 -1.31 16 22 Cl -0.05 -1.27 28.50 -2.72 -0.08 -1.35 16 23 C 0.00 0.02 7.52 83.57 0.63 0.65 16 24 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 25 H 0.03 1.38 7.14 -2.38 -0.02 1.37 16 26 H 0.01 0.58 6.73 -2.39 -0.02 0.56 16 27 H 0.09 2.80 7.42 -2.39 -0.02 2.78 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.13 2.29 5.90 -2.39 -0.01 2.27 16 30 H 0.17 2.74 5.88 -2.91 -0.02 2.72 16 31 H 0.41 1.62 9.06 -74.06 -0.67 0.95 16 32 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.11 2.55 7.91 -2.39 -0.02 2.53 16 Total: -1.00 -73.86 321.63 -2.13 -75.99 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.44 Total: 5.16 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 3.41 Total: -21.66 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -5.59 Total: -86.03 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -2.11 Total: -16.44 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.16 Total: -2.09 kcal Total: -73.86 -2.13 -75.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227647558.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.449 kcal (2) G-P(sol) polarization free energy of solvation -73.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds