Wall clock time and date at job start Tue Mar 31 2020 11:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99962 * 2 1 4 4 H 1.48500 * 109.47263 * 89.99942 * 3 2 1 5 5 H 1.48499 * 109.47052 * 210.00089 * 3 2 1 6 6 H 1.48507 * 109.47108 * 329.99966 * 3 2 1 7 7 C 1.37880 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99480 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00071 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.47476 * 110.99876 * 265.96906 * 10 9 7 12 12 C 1.53517 * 87.93255 * 221.29849 * 11 10 9 13 13 O 1.42899 * 114.16824 * 139.67302 * 12 11 10 14 14 C 1.35944 * 117.00056 * 107.91826 * 13 12 11 15 15 C 1.38641 * 120.01766 * 353.93496 * 14 13 12 16 16 C 1.38604 * 119.91428 * 179.74307 * 15 14 13 17 17 O 1.35939 * 120.02284 * 180.25226 * 16 15 14 18 18 C 1.38855 * 119.95871 * 0.53135 * 16 15 14 19 19 Cl 1.73599 * 119.98284 * 179.69760 * 18 16 15 20 20 C 1.38254 * 120.03767 * 359.72348 * 18 16 15 21 21 C 1.38286 * 120.08519 * 0.02562 * 20 18 16 22 22 Cl 1.73599 * 119.97859 * 179.97438 * 21 20 18 23 23 C 1.47486 * 110.99647 * 169.99803 * 10 9 7 24 24 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47138 * 300.00130 * 9 7 2 26 26 H 1.08996 * 109.47309 * 59.99973 * 9 7 2 27 27 H 1.08994 * 113.48000 * 336.06503 * 11 10 9 28 28 H 1.09004 * 113.47484 * 106.53580 * 11 10 9 29 29 H 1.09002 * 114.34137 * 272.36406 * 12 11 10 30 30 H 1.07997 * 120.04759 * 0.02562 * 15 14 13 31 31 H 0.96696 * 114.00516 * 270.27873 * 17 16 15 32 32 H 1.08005 * 119.95558 * 180.02562 * 20 18 16 33 33 H 1.09000 * 113.47409 * 253.46547 * 23 10 9 34 34 H 1.08993 * 113.47545 * 23.87843 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0047 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0022 11 6 4.2681 -3.0441 1.3761 12 6 5.5418 -3.7145 0.8422 13 8 6.6730 -3.5936 1.7070 14 6 7.0714 -4.7159 2.3626 15 6 6.3155 -5.8749 2.2762 16 6 6.7265 -7.0194 2.9412 17 8 5.9896 -8.1585 2.8538 18 6 7.8883 -7.0003 3.7014 19 17 8.3994 -8.4312 4.5408 20 6 8.6379 -5.8421 3.7906 21 6 8.2322 -4.7006 3.1236 22 17 9.1753 -3.2476 3.2381 23 6 5.4560 -2.6255 -0.2363 24 1 -0.4849 0.8401 -0.0004 25 1 3.8753 -0.6804 -0.8888 26 1 3.8746 -0.6800 0.8911 27 1 4.4654 -2.2341 2.0781 28 1 3.5271 -3.7526 1.7463 29 1 5.3932 -4.7270 0.4670 30 1 5.4099 -5.8872 1.6878 31 1 5.3093 -8.2402 3.5361 32 1 9.5416 -5.8288 4.3819 33 1 5.7215 -2.9791 -1.2326 34 1 5.9700 -1.7033 0.0345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229405793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:46 Heat of formation + Delta-G solvation = -17.211602 kcal Electronic energy + Delta-G solvation = -21228.113680 eV Core-core repulsion = 17601.224640 eV Total energy + Delta-G solvation = -3626.889040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97350 -39.70668 -38.09791 -37.02089 -36.76393 -35.84651 -32.87678 -30.76363 -30.29484 -29.26022 -25.96529 -25.61560 -23.58244 -22.91834 -21.26186 -19.81427 -19.40397 -17.68577 -17.16794 -16.97002 -16.82214 -15.88128 -15.34497 -15.21563 -14.82864 -14.42408 -14.12537 -13.83215 -13.50022 -13.33899 -12.99162 -12.57776 -12.46316 -12.33287 -12.14785 -11.76131 -11.55051 -11.28951 -11.12809 -11.05191 -10.98470 -10.73847 -10.22912 -10.14528 -9.87143 -9.46125 -9.25972 -8.66146 -8.40518 -8.26670 -6.12761 -4.11303 0.51337 0.68005 1.58416 2.01644 2.82822 2.90567 3.22264 3.30605 3.31126 3.62697 4.22647 4.34436 4.39994 4.51664 4.56817 4.76470 4.88992 5.12214 5.17030 5.22060 5.34129 5.46081 5.64404 5.69360 5.83751 5.92939 5.97517 6.02292 6.21711 6.58202 7.02377 7.14883 7.15227 7.51941 7.66334 8.51982 8.96480 9.47579 11.00352 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.002994 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.169541 B = 9351.146306 C =10283.194518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.447 5.447 11 C -0.003 4.003 12 C 0.037 3.963 13 O -0.283 6.283 14 C 0.174 3.826 15 C -0.216 4.216 16 C 0.167 3.833 17 O -0.484 6.484 18 C -0.098 4.098 19 Cl -0.052 7.052 20 C -0.050 4.050 21 C -0.075 4.075 22 Cl -0.043 7.043 23 C 0.002 3.998 24 H 0.265 0.735 25 H 0.031 0.969 26 H 0.000 1.000 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.159 0.841 31 H 0.399 0.601 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.597 -14.020 9.030 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.099 0.901 9 C 0.003 3.997 10 N -0.171 5.171 11 C -0.133 4.133 12 C -0.019 4.019 13 O -0.194 6.194 14 C 0.125 3.875 15 C -0.235 4.235 16 C 0.121 3.879 17 O -0.295 6.295 18 C -0.126 4.126 19 Cl -0.023 7.023 20 C -0.069 4.069 21 C -0.103 4.103 22 Cl -0.014 7.014 23 C -0.127 4.127 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.018 0.982 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.176 0.824 31 H 0.257 0.743 32 H 0.170 0.830 33 H 0.109 0.891 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.491 -14.124 8.177 24.664 hybrid contribution 0.479 1.461 0.941 1.803 sum 18.970 -12.663 9.119 24.563 Atomic orbital electron populations 1.69889 1.06121 1.26964 1.50653 1.24912 0.94777 0.98866 0.94734 0.86876 0.80348 0.84037 0.78605 1.20183 1.19191 1.20951 1.20912 0.88299 0.94898 1.50733 0.90089 1.20756 0.98248 0.84614 0.96035 1.69009 1.09360 1.24340 1.14409 1.24327 0.94468 1.00139 0.94318 1.24706 0.84361 1.01153 0.91682 1.86318 1.47617 1.29725 1.55773 1.18576 0.91078 0.86621 0.91207 1.21526 1.03774 0.91353 1.06877 1.17874 0.90399 0.85776 0.93848 1.84825 1.51099 1.36993 1.56563 1.20989 0.98893 0.89881 1.02848 1.98372 1.90358 1.37218 1.76362 1.20616 0.99639 0.88843 0.97801 1.19988 0.94721 0.90371 1.05231 1.98389 1.70908 1.34858 1.97230 1.24099 0.93211 0.97277 0.98104 0.92527 0.95075 0.98249 0.90410 0.89425 0.86862 0.82393 0.74281 0.83004 0.89108 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.34 9.94 -34.44 -0.34 -14.68 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 9 C 0.13 3.06 3.64 -4.98 -0.02 3.04 16 10 N -0.45 -8.85 6.32 -246.09 -1.55 -10.40 16 11 C 0.00 -0.06 7.55 -7.54 -0.06 -0.11 16 12 C 0.04 0.51 4.01 -26.20 -0.11 0.40 16 13 O -0.28 -3.82 9.64 -19.56 -0.19 -4.01 16 14 C 0.17 2.06 6.67 -39.22 -0.26 1.80 16 15 C -0.22 -2.28 8.95 -39.30 -0.35 -2.63 16 16 C 0.17 1.64 6.70 -39.22 -0.26 1.38 16 17 O -0.48 -4.16 12.96 -19.55 -0.25 -4.41 16 18 C -0.10 -0.94 6.33 -39.35 -0.25 -1.19 16 19 Cl -0.05 -0.46 28.50 -51.86 -1.48 -1.94 16 20 C -0.05 -0.46 9.60 -39.56 -0.38 -0.84 16 21 C -0.08 -0.83 6.33 -39.35 -0.25 -1.08 16 22 Cl -0.04 -0.48 28.50 -51.86 -1.48 -1.96 16 23 C 0.00 0.03 7.52 -7.53 -0.06 -0.02 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 26 H 0.00 0.00 6.73 -51.93 -0.35 -0.35 16 27 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.11 1.35 6.00 -51.93 -0.31 1.04 16 30 H 0.16 1.56 5.92 -52.49 -0.31 1.25 16 31 H 0.40 1.70 9.06 45.56 0.41 2.12 16 32 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.18 7.91 -51.93 -0.41 0.77 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -31.36 321.69 -9.01 -40.37 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.58 Total: -0.43 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.43 Total: -12.06 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.78 Total: -36.84 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.44 Total: -8.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -2.96 Total: -3.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.36 -9.01 -40.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229405793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.161 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds