Wall clock time and date at job start Tue Mar 31 2020 11:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99962 * 2 1 4 4 H 1.48500 * 109.47263 * 89.99942 * 3 2 1 5 5 H 1.48499 * 109.47052 * 210.00089 * 3 2 1 6 6 H 1.48507 * 109.47108 * 329.99966 * 3 2 1 7 7 C 1.37880 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99480 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00071 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.47476 * 110.99876 * 265.96906 * 10 9 7 12 12 C 1.53517 * 87.93255 * 221.29849 * 11 10 9 13 13 O 1.42899 * 114.16824 * 139.67302 * 12 11 10 14 14 C 1.35944 * 117.00056 * 107.91826 * 13 12 11 15 15 C 1.38641 * 120.01766 * 353.93496 * 14 13 12 16 16 C 1.38604 * 119.91428 * 179.74307 * 15 14 13 17 17 O 1.35939 * 120.02284 * 180.25226 * 16 15 14 18 18 C 1.38855 * 119.95871 * 0.53135 * 16 15 14 19 19 Cl 1.73599 * 119.98284 * 179.69760 * 18 16 15 20 20 C 1.38254 * 120.03767 * 359.72348 * 18 16 15 21 21 C 1.38286 * 120.08519 * 0.02562 * 20 18 16 22 22 Cl 1.73599 * 119.97859 * 179.97438 * 21 20 18 23 23 C 1.47486 * 110.99647 * 169.99803 * 10 9 7 24 24 H 0.97000 * 119.99655 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47138 * 300.00130 * 9 7 2 26 26 H 1.08996 * 109.47309 * 59.99973 * 9 7 2 27 27 H 1.08994 * 113.48000 * 336.06503 * 11 10 9 28 28 H 1.09004 * 113.47484 * 106.53580 * 11 10 9 29 29 H 1.09002 * 114.34137 * 272.36406 * 12 11 10 30 30 H 1.07997 * 120.04759 * 0.02562 * 15 14 13 31 31 H 0.96696 * 114.00516 * 270.27873 * 17 16 15 32 32 H 1.08005 * 119.95558 * 180.02562 * 20 18 16 33 33 H 1.09000 * 113.47409 * 253.46547 * 23 10 9 34 34 H 1.08993 * 113.47545 * 23.87843 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0047 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0022 11 6 4.2681 -3.0441 1.3761 12 6 5.5418 -3.7145 0.8422 13 8 6.6730 -3.5936 1.7070 14 6 7.0714 -4.7159 2.3626 15 6 6.3155 -5.8749 2.2762 16 6 6.7265 -7.0194 2.9412 17 8 5.9896 -8.1585 2.8538 18 6 7.8883 -7.0003 3.7014 19 17 8.3994 -8.4312 4.5408 20 6 8.6379 -5.8421 3.7906 21 6 8.2322 -4.7006 3.1236 22 17 9.1753 -3.2476 3.2381 23 6 5.4560 -2.6255 -0.2363 24 1 -0.4849 0.8401 -0.0004 25 1 3.8753 -0.6804 -0.8888 26 1 3.8746 -0.6800 0.8911 27 1 4.4654 -2.2341 2.0781 28 1 3.5271 -3.7526 1.7463 29 1 5.3932 -4.7270 0.4670 30 1 5.4099 -5.8872 1.6878 31 1 5.3093 -8.2402 3.5361 32 1 9.5416 -5.8288 4.3819 33 1 5.7215 -2.9791 -1.2326 34 1 5.9700 -1.7033 0.0345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229405793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:45 Heat of formation + Delta-G solvation = -40.872222 kcal Electronic energy + Delta-G solvation = -21229.139681 eV Core-core repulsion = 17601.224640 eV Total energy + Delta-G solvation = -3627.915041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97177 -40.75278 -39.05766 -37.85408 -37.53732 -36.66291 -34.96911 -31.91667 -31.52749 -30.29052 -27.51805 -26.94350 -24.66266 -23.77868 -22.82830 -21.06068 -20.26055 -19.01901 -18.50074 -18.03699 -17.78346 -16.93367 -16.61817 -16.32388 -16.16678 -15.58706 -15.31278 -14.99703 -14.76712 -14.30228 -14.22952 -13.97956 -13.85038 -13.58532 -13.23974 -12.97463 -12.76015 -12.57481 -12.32856 -11.99099 -11.94705 -11.80639 -11.77495 -11.68025 -11.49860 -11.26265 -10.82233 -10.03696 -9.82991 -9.24738 -8.31989 -6.36495 -0.25478 -0.11619 0.81114 1.22277 1.33021 1.34689 1.45050 1.84811 2.12642 2.31267 2.91481 3.00314 3.16456 3.23932 3.49072 3.70170 3.77161 4.02296 4.13998 4.35652 4.41708 4.50209 4.51316 4.54478 4.65743 4.70858 4.78738 4.84928 4.86250 5.16168 5.40113 5.61756 5.87193 6.07519 6.46001 6.61122 6.69869 7.26896 8.84826 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.002994 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.169541 B = 9351.146306 C =10283.194518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.247 1.247 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.036 0.964 9 C 0.140 3.860 10 N -0.474 5.474 11 C -0.010 4.010 12 C 0.065 3.935 13 O -0.293 6.293 14 C 0.156 3.844 15 C -0.217 4.217 16 C 0.172 3.828 17 O -0.490 6.490 18 C -0.100 4.100 19 Cl -0.043 7.043 20 C -0.043 4.043 21 C -0.083 4.083 22 Cl -0.048 7.048 23 C 0.002 3.998 24 H 0.268 0.732 25 H 0.033 0.967 26 H 0.004 0.996 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.164 0.836 31 H 0.418 0.582 32 H 0.172 0.828 33 H 0.110 0.890 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.874 -14.416 9.485 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.171 1.171 6 H -0.206 1.206 7 C -0.558 4.558 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.198 5.198 11 C -0.139 4.139 12 C 0.009 3.991 13 O -0.205 6.205 14 C 0.108 3.892 15 C -0.237 4.237 16 C 0.125 3.875 17 O -0.304 6.304 18 C -0.128 4.128 19 Cl -0.014 7.014 20 C -0.062 4.062 21 C -0.111 4.111 22 Cl -0.019 7.019 23 C -0.127 4.127 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.181 0.819 31 H 0.279 0.721 32 H 0.189 0.811 33 H 0.128 0.872 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.783 -14.553 8.650 26.806 hybrid contribution -0.245 1.377 0.873 1.649 sum 20.537 -13.177 9.523 26.193 Atomic orbital electron populations 1.70048 1.08165 1.28244 1.52264 1.25877 0.95639 1.03201 0.94218 0.85724 0.79520 0.78548 0.79254 1.19140 1.17106 1.20560 1.21179 0.90984 0.93298 1.50311 0.94591 1.20508 0.95052 0.87153 0.96027 1.68866 1.12473 1.21881 1.16584 1.24369 0.96457 1.00219 0.92888 1.24346 0.83047 1.01352 0.90340 1.86280 1.47230 1.30798 1.56170 1.18728 0.91863 0.86570 0.91992 1.21567 1.03797 0.91226 1.07080 1.17891 0.90525 0.85776 0.93280 1.84781 1.51702 1.36313 1.57647 1.21093 0.98779 0.90240 1.02665 1.98380 1.90258 1.36693 1.76115 1.20802 1.00023 0.88130 0.97215 1.20100 0.94660 0.90690 1.05625 1.98386 1.70975 1.35275 1.97272 1.24151 0.90371 0.98239 0.99938 0.92304 0.94944 0.97779 0.91290 0.89379 0.84768 0.81895 0.72051 0.81102 0.87210 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 43.34 27.47 68.60 1.88 45.23 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.52 -29.94 9.94 25.60 0.25 -29.69 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 9 C 0.14 6.54 3.64 85.55 0.31 6.85 16 10 N -0.47 -18.56 6.32 -932.89 -5.89 -24.45 16 11 C -0.01 -0.33 7.55 83.58 0.63 0.30 16 12 C 0.07 1.68 4.01 30.94 0.12 1.81 16 13 O -0.29 -7.44 9.64 -92.91 -0.90 -8.33 16 14 C 0.16 3.44 6.67 22.50 0.15 3.59 16 15 C -0.22 -4.17 8.95 22.45 0.20 -3.96 16 16 C 0.17 3.00 6.70 22.51 0.15 3.15 16 17 O -0.49 -7.30 12.96 -92.87 -1.20 -8.51 16 18 C -0.10 -1.69 6.33 22.42 0.14 -1.55 16 19 Cl -0.04 -0.67 28.50 -2.72 -0.08 -0.74 16 20 C -0.04 -0.70 9.60 22.28 0.21 -0.49 16 21 C -0.08 -1.69 6.33 22.42 0.14 -1.54 16 22 Cl -0.05 -1.00 28.50 -2.72 -0.08 -1.08 16 23 C 0.00 0.05 7.52 83.58 0.63 0.68 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.03 1.50 7.14 -2.39 -0.02 1.48 16 26 H 0.00 0.20 6.73 -2.39 -0.02 0.19 16 27 H 0.07 2.38 7.42 -2.39 -0.02 2.37 16 28 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.13 2.89 6.00 -2.39 -0.01 2.88 16 30 H 0.16 2.89 5.92 -2.91 -0.02 2.87 16 31 H 0.42 2.60 9.06 -74.06 -0.67 1.93 16 32 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.26 7.91 -2.39 -0.02 2.24 16 Total: -1.00 -68.41 321.69 -2.11 -70.52 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.44 Total: 5.96 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.41 Total: -19.92 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -5.59 Total: -83.12 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -2.10 Total: -16.84 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.16 Total: -1.83 kcal Total: -68.41 -2.11 -70.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229405793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.649 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds