Wall clock time and date at job start Tue Mar 31 2020 11:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99714 * 2 1 4 4 H 1.48499 * 109.46995 * 270.00324 * 3 2 1 5 5 H 1.48503 * 109.47093 * 30.00184 * 3 2 1 6 6 H 1.48490 * 109.47059 * 150.00222 * 3 2 1 7 7 C 1.38806 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64596 * 0.02746 * 9 7 2 11 11 C 1.54912 * 104.83132 * 155.83625 * 10 9 7 12 12 C 1.55150 * 101.58357 * 37.00836 * 11 10 9 13 13 H 1.09000 * 110.72440 * 83.03863 * 12 11 10 14 14 O 1.42900 * 110.72188 * 206.13665 * 12 11 10 15 15 C 1.35943 * 116.99813 * 203.81347 * 14 12 11 16 16 C 1.38639 * 120.02476 * 354.44132 * 15 14 12 17 17 C 1.38600 * 119.91681 * 179.97438 * 16 15 14 18 18 O 1.35942 * 120.01573 * 180.02562 * 17 16 15 19 19 C 1.38844 * 119.95949 * 0.02562 * 17 16 15 20 20 Cl 1.73601 * 119.97900 * 180.27874 * 19 17 16 21 21 C 1.38260 * 120.04323 * 0.02562 * 19 17 16 22 22 C 1.38291 * 120.08151 * 359.97438 * 21 19 17 23 23 Cl 1.73598 * 119.97883 * 180.02562 * 22 21 19 24 24 C 1.47316 * 125.61931 * 180.16667 * 9 7 2 25 25 H 0.96999 * 120.00667 * 359.97438 * 1 2 3 26 26 H 1.08993 * 110.37196 * 36.99386 * 10 9 7 27 27 H 1.09003 * 110.46233 * 274.72162 * 10 9 7 28 28 H 1.08994 * 111.00216 * 278.93206 * 11 10 9 29 29 H 1.08999 * 111.00439 * 155.08426 * 11 10 9 30 30 H 1.08002 * 120.03756 * 359.95635 * 16 15 14 31 31 H 0.96698 * 114.00121 * 269.96851 * 18 17 16 32 32 H 1.08002 * 119.95356 * 179.97438 * 21 19 17 33 33 H 1.09001 * 110.06595 * 61.75119 * 24 9 7 34 34 H 1.09003 * 109.84603 * 300.49521 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1414 -2.5332 -0.0006 11 6 -0.4015 -3.9319 -0.6136 12 6 0.7785 -4.7524 -0.0293 13 1 0.5449 -5.1015 0.9766 14 8 1.1006 -5.8528 -0.8822 15 6 1.7296 -6.9135 -0.3102 16 6 2.1331 -6.8489 1.0146 17 6 2.7738 -7.9319 1.5957 18 8 3.1699 -7.8709 2.8947 19 6 3.0108 -9.0790 0.8502 20 17 3.8067 -10.4385 1.5796 21 6 2.6086 -9.1413 -0.4711 22 6 1.9692 -8.0617 -1.0527 23 17 1.4647 -8.1431 -2.7117 24 6 1.9339 -3.7298 0.0024 25 1 -0.4851 0.8400 0.0004 26 1 -0.5993 -1.7584 -0.6154 27 1 -0.5289 -2.4870 1.0172 28 1 -0.3519 -3.8968 -1.7018 29 1 -1.3588 -4.3326 -0.2804 30 1 1.9487 -5.9556 1.5929 31 1 4.0656 -7.5277 3.0170 32 1 2.7940 -10.0342 -1.0497 33 1 2.5277 -3.8692 0.9058 34 1 2.5624 -3.8531 -0.8796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229405973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:51 Heat of formation + Delta-G solvation = -34.088848 kcal Electronic energy + Delta-G solvation = -21700.012591 eV Core-core repulsion = 18072.391699 eV Total energy + Delta-G solvation = -3627.620892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66756 -38.90090 -37.31213 -36.74270 -36.39119 -35.62589 -32.41402 -30.61427 -29.77762 -29.06297 -27.46730 -24.74694 -23.32387 -22.72857 -20.41317 -20.36233 -19.14235 -17.47487 -17.28769 -16.80515 -16.62169 -15.74106 -14.97276 -14.83387 -14.56385 -14.20738 -13.97460 -13.43386 -13.37507 -13.01950 -12.58969 -12.43905 -12.19880 -11.89772 -11.63335 -11.44592 -11.09419 -11.04355 -10.98194 -10.92111 -10.85441 -10.54209 -10.29766 -10.12917 -9.93320 -9.70738 -9.10889 -8.75555 -8.23643 -6.97629 -5.75682 -3.18605 0.66121 0.84181 1.71111 2.15753 3.06082 3.08043 3.35428 3.40494 3.42315 3.76892 4.40231 4.42361 4.68970 4.93948 5.04549 5.13807 5.28111 5.36901 5.40581 5.45157 5.53311 5.61340 5.78094 6.03046 6.16816 6.31662 6.36391 6.44075 6.49959 7.22325 7.32622 7.36636 7.50823 7.72448 8.23061 9.10266 9.70344 10.32577 11.28656 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.003356 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.277595 B = 8340.066978 C = 9228.444241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.917 3.083 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.134 4.134 12 C 0.063 3.937 13 H 0.081 0.919 14 O -0.283 6.283 15 C 0.176 3.824 16 C -0.217 4.217 17 C 0.167 3.833 18 O -0.484 6.484 19 C -0.101 4.101 20 Cl -0.055 7.055 21 C -0.050 4.050 22 C -0.077 4.077 23 Cl -0.044 7.044 24 C 0.119 3.881 25 H 0.254 0.746 26 H 0.115 0.885 27 H 0.018 0.982 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.398 0.602 32 H 0.151 0.849 33 H 0.027 0.973 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -18.992 0.775 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.028 3.972 11 C -0.173 4.173 12 C 0.008 3.992 13 H 0.099 0.901 14 O -0.195 6.195 15 C 0.128 3.872 16 C -0.236 4.236 17 C 0.120 3.880 18 O -0.295 6.295 19 C -0.128 4.128 20 Cl -0.026 7.026 21 C -0.070 4.070 22 C -0.104 4.104 23 Cl -0.015 7.015 24 C -0.007 4.007 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.175 0.825 31 H 0.256 0.744 32 H 0.169 0.831 33 H 0.045 0.955 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.846 -19.058 0.617 19.452 hybrid contribution 1.031 0.889 0.183 1.374 sum 4.877 -18.169 0.800 18.829 Atomic orbital electron populations 1.69743 1.04941 1.25070 1.57286 1.24800 0.95765 0.97816 1.02029 0.86033 0.78513 0.83026 0.77675 1.21444 1.21541 1.20667 1.19071 0.90577 0.82144 1.43634 0.90328 1.44430 1.01829 0.99322 1.87180 1.22013 0.84794 0.91796 0.98619 1.23226 0.94660 0.97574 1.01842 1.23893 0.98043 0.83999 0.93302 0.90096 1.86313 1.70454 1.24659 1.38036 1.18634 0.90915 0.87296 0.90386 1.21576 1.06424 1.01035 0.94563 1.17871 0.95691 0.90736 0.83657 1.84817 1.37196 1.87322 1.20193 1.20948 1.06763 0.91425 0.93709 1.98362 1.78484 1.42842 1.82928 1.20587 0.95808 0.97810 0.92747 1.19967 1.08065 0.94128 0.88276 1.98381 1.89754 1.98313 1.15051 1.21740 0.93585 0.86486 0.98900 0.93509 0.86717 0.96442 0.90526 0.91294 0.82483 0.74396 0.83108 0.95533 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.07 10.09 55.49 0.56 -25.51 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.15 10.28 -15.06 -0.15 -6.31 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.92 3.40 -169.84 -0.58 -15.50 16 10 C 0.15 3.54 5.89 -2.53 -0.01 3.53 16 11 C -0.13 -2.48 6.81 -24.59 -0.17 -2.64 16 12 C 0.06 1.09 2.74 -24.90 -0.07 1.02 16 13 H 0.08 1.26 6.26 -51.93 -0.33 0.94 16 14 O -0.28 -4.58 9.32 -19.56 -0.18 -4.77 16 15 C 0.18 2.48 6.66 -39.22 -0.26 2.22 16 16 C -0.22 -2.79 8.83 -39.30 -0.35 -3.14 16 17 C 0.17 1.93 6.69 -39.22 -0.26 1.67 16 18 O -0.48 -4.97 12.96 -19.56 -0.25 -5.22 16 19 C -0.10 -1.11 6.33 -39.35 -0.25 -1.36 16 20 Cl -0.05 -0.55 28.50 -51.86 -1.48 -2.02 16 21 C -0.05 -0.54 9.60 -39.55 -0.38 -0.92 16 22 C -0.08 -0.97 6.33 -39.35 -0.25 -1.22 16 23 Cl -0.04 -0.55 28.50 -51.86 -1.48 -2.03 16 24 C 0.12 2.41 6.81 -2.90 -0.02 2.39 16 25 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.12 3.01 5.87 -51.93 -0.30 2.70 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.16 2.04 5.60 -52.49 -0.29 1.74 16 31 H 0.40 2.35 9.06 45.56 0.41 2.77 16 32 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.03 0.52 7.78 -51.93 -0.40 0.11 16 34 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -29.67 317.36 -8.49 -38.16 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -2.57 Total: 0.67 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.27 Total: -5.08 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.02 Total: -41.01 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.44 Total: -9.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -2.96 Total: -4.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.67 -8.49 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229405973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.072 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds