Wall clock time and date at job start Tue Mar 31 2020 11:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99714 * 2 1 4 4 H 1.48499 * 109.46995 * 270.00324 * 3 2 1 5 5 H 1.48503 * 109.47093 * 30.00184 * 3 2 1 6 6 H 1.48490 * 109.47059 * 150.00222 * 3 2 1 7 7 C 1.38806 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64596 * 0.02746 * 9 7 2 11 11 C 1.54912 * 104.83132 * 155.83625 * 10 9 7 12 12 C 1.55150 * 101.58357 * 37.00836 * 11 10 9 13 13 H 1.09000 * 110.72440 * 83.03863 * 12 11 10 14 14 O 1.42900 * 110.72188 * 206.13665 * 12 11 10 15 15 C 1.35943 * 116.99813 * 203.81347 * 14 12 11 16 16 C 1.38639 * 120.02476 * 354.44132 * 15 14 12 17 17 C 1.38600 * 119.91681 * 179.97438 * 16 15 14 18 18 O 1.35942 * 120.01573 * 180.02562 * 17 16 15 19 19 C 1.38844 * 119.95949 * 0.02562 * 17 16 15 20 20 Cl 1.73601 * 119.97900 * 180.27874 * 19 17 16 21 21 C 1.38260 * 120.04323 * 0.02562 * 19 17 16 22 22 C 1.38291 * 120.08151 * 359.97438 * 21 19 17 23 23 Cl 1.73598 * 119.97883 * 180.02562 * 22 21 19 24 24 C 1.47316 * 125.61931 * 180.16667 * 9 7 2 25 25 H 0.96999 * 120.00667 * 359.97438 * 1 2 3 26 26 H 1.08993 * 110.37196 * 36.99386 * 10 9 7 27 27 H 1.09003 * 110.46233 * 274.72162 * 10 9 7 28 28 H 1.08994 * 111.00216 * 278.93206 * 11 10 9 29 29 H 1.08999 * 111.00439 * 155.08426 * 11 10 9 30 30 H 1.08002 * 120.03756 * 359.95635 * 16 15 14 31 31 H 0.96698 * 114.00121 * 269.96851 * 18 17 16 32 32 H 1.08002 * 119.95356 * 179.97438 * 21 19 17 33 33 H 1.09001 * 110.06595 * 61.75119 * 24 9 7 34 34 H 1.09003 * 109.84603 * 300.49521 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1414 -2.5332 -0.0006 11 6 -0.4015 -3.9319 -0.6136 12 6 0.7785 -4.7524 -0.0293 13 1 0.5449 -5.1015 0.9766 14 8 1.1006 -5.8528 -0.8822 15 6 1.7296 -6.9135 -0.3102 16 6 2.1331 -6.8489 1.0146 17 6 2.7738 -7.9319 1.5957 18 8 3.1699 -7.8709 2.8947 19 6 3.0108 -9.0790 0.8502 20 17 3.8067 -10.4385 1.5796 21 6 2.6086 -9.1413 -0.4711 22 6 1.9692 -8.0617 -1.0527 23 17 1.4647 -8.1431 -2.7117 24 6 1.9339 -3.7298 0.0024 25 1 -0.4851 0.8400 0.0004 26 1 -0.5993 -1.7584 -0.6154 27 1 -0.5289 -2.4870 1.0172 28 1 -0.3519 -3.8968 -1.7018 29 1 -1.3588 -4.3326 -0.2804 30 1 1.9487 -5.9556 1.5929 31 1 4.0656 -7.5277 3.0170 32 1 2.7940 -10.0342 -1.0497 33 1 2.5277 -3.8692 0.9058 34 1 2.5624 -3.8531 -0.8796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229405973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:51 Heat of formation + Delta-G solvation = -52.471425 kcal Electronic energy + Delta-G solvation = -21700.809720 eV Core-core repulsion = 18072.391699 eV Total energy + Delta-G solvation = -3628.418020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72421 -40.02449 -38.48674 -37.73182 -37.51833 -36.65566 -34.30412 -31.62199 -31.28645 -30.34732 -29.02976 -26.57966 -24.41033 -23.74150 -22.17808 -21.75114 -20.15853 -19.06028 -18.44904 -17.88648 -17.73438 -16.95745 -16.73327 -16.05939 -15.68593 -15.66823 -15.19222 -14.84333 -14.34851 -14.29794 -14.06040 -13.72269 -13.57376 -13.18667 -13.08329 -12.93466 -12.67649 -12.34541 -12.28661 -12.10490 -12.02906 -11.93951 -11.81422 -11.74881 -11.47496 -11.39900 -10.77668 -10.03384 -9.24140 -8.95365 -7.80839 -5.26251 -0.25074 -0.10299 0.81248 1.23178 1.47864 1.49338 1.57879 1.90970 2.13658 2.48542 2.92166 3.30590 3.47886 3.53151 3.64273 3.79473 3.87431 3.97913 4.07183 4.37976 4.49549 4.56517 4.57455 4.67710 4.80492 4.87891 4.92840 4.96700 5.19510 5.43009 5.55246 5.73959 6.11956 6.26743 6.59857 7.06448 7.71574 8.33701 9.21306 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.003356 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.277595 B = 8340.066978 C = 9228.444241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.155 3.845 11 C -0.122 4.122 12 C 0.083 3.917 13 H 0.101 0.899 14 O -0.294 6.294 15 C 0.155 3.845 16 C -0.221 4.221 17 C 0.173 3.827 18 O -0.490 6.490 19 C -0.099 4.099 20 Cl -0.041 7.041 21 C -0.040 4.040 22 C -0.082 4.082 23 Cl -0.047 7.047 24 C 0.118 3.882 25 H 0.249 0.751 26 H 0.081 0.919 27 H 0.002 0.998 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.418 0.582 32 H 0.174 0.826 33 H 0.038 0.962 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 -20.757 1.275 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.030 3.970 11 C -0.161 4.161 12 C 0.026 3.974 13 H 0.118 0.882 14 O -0.206 6.206 15 C 0.108 3.892 16 C -0.240 4.240 17 C 0.126 3.874 18 O -0.304 6.304 19 C -0.127 4.127 20 Cl -0.012 7.012 21 C -0.059 4.059 22 C -0.110 4.110 23 Cl -0.018 7.018 24 C -0.007 4.007 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.020 0.980 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.172 0.828 31 H 0.279 0.721 32 H 0.192 0.808 33 H 0.056 0.944 34 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.907 -20.859 1.122 21.458 hybrid contribution 0.803 1.299 0.079 1.529 sum 5.710 -19.561 1.201 20.412 Atomic orbital electron populations 1.69989 1.06151 1.25298 1.58189 1.25618 0.96660 1.00911 1.02291 0.85044 0.77625 0.78934 0.77501 1.21280 1.21847 1.19481 1.19426 0.91052 0.83490 1.43186 0.90115 1.44713 1.02725 1.00462 1.87170 1.21770 0.84076 0.93810 0.97341 1.23017 0.96773 0.95076 1.01190 1.23538 0.95765 0.83806 0.94254 0.88171 1.86268 1.71415 1.24890 1.37997 1.18810 0.92089 0.87159 0.91177 1.21549 1.06865 1.01453 0.94173 1.17861 0.95081 0.90463 0.84001 1.84773 1.38840 1.87456 1.19343 1.21042 1.06265 0.91638 0.93772 1.98374 1.78125 1.42034 1.82716 1.20811 0.94463 0.97888 0.92772 1.20081 1.08482 0.94245 0.88213 1.98380 1.89847 1.98310 1.15228 1.21847 0.94706 0.85397 0.98788 0.94080 0.90076 0.98017 0.91123 0.88383 0.82786 0.72125 0.80819 0.94398 0.95361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.97 10.09 21.65 0.22 -54.75 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.98 44.70 29.55 68.60 2.03 46.73 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.24 -13.38 10.28 84.03 0.86 -12.52 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.62 -31.43 3.40 -691.24 -2.35 -33.78 16 10 C 0.15 7.35 5.89 86.86 0.51 7.87 16 11 C -0.12 -4.44 6.81 31.98 0.22 -4.22 16 12 C 0.08 2.74 2.74 31.78 0.09 2.83 16 13 H 0.10 2.95 6.26 -2.39 -0.01 2.94 16 14 O -0.29 -9.16 9.32 -92.91 -0.87 -10.03 16 15 C 0.16 4.14 6.66 22.50 0.15 4.29 16 16 C -0.22 -5.30 8.83 22.45 0.20 -5.10 16 17 C 0.17 3.60 6.69 22.50 0.15 3.75 16 18 O -0.49 -8.81 12.96 -92.89 -1.20 -10.01 16 19 C -0.10 -1.93 6.33 22.42 0.14 -1.79 16 20 Cl -0.04 -0.71 28.50 -2.72 -0.08 -0.79 16 21 C -0.04 -0.76 9.60 22.29 0.21 -0.55 16 22 C -0.08 -1.94 6.33 22.42 0.14 -1.80 16 23 Cl -0.05 -1.10 28.50 -2.72 -0.08 -1.18 16 24 C 0.12 4.74 6.81 86.67 0.59 5.33 16 25 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.08 4.42 5.87 -2.39 -0.01 4.41 16 27 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.15 3.74 5.60 -2.91 -0.02 3.73 16 31 H 0.42 3.84 9.06 -74.06 -0.67 3.17 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.04 1.44 7.78 -2.39 -0.02 1.42 16 34 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 Total: -1.00 -63.92 317.36 1.89 -62.02 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.49 Total: 6.68 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 3.73 Total: -4.88 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.13 Total: -88.54 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -2.07 Total: -20.04 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.16 Total: -1.97 kcal Total: -63.92 1.89 -62.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229405973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.550 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds