Wall clock time and date at job start Tue Mar 31 2020 11:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48493 * 109.47450 * 89.99656 * 3 2 1 5 5 H 1.48507 * 109.46863 * 209.99722 * 3 2 1 6 6 H 1.48500 * 109.47150 * 329.99226 * 3 2 1 7 7 C 1.38813 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00225 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.64966 * 359.69098 * 9 7 2 11 11 C 1.54341 * 107.26618 * 178.85053 * 10 9 7 12 12 C 1.55163 * 103.01703 * 338.13983 * 11 10 9 13 13 H 1.08998 * 111.00267 * 277.23095 * 12 11 10 14 14 O 1.42902 * 111.00296 * 153.38453 * 12 11 10 15 15 C 1.35934 * 116.99893 * 162.33873 * 14 12 11 16 16 C 1.38639 * 120.02266 * 5.30648 * 15 14 12 17 17 C 1.38605 * 119.91269 * 179.68070 * 16 15 14 18 18 O 1.35945 * 120.01525 * 180.31757 * 17 16 15 19 19 C 1.38854 * 119.96296 * 0.61641 * 17 16 15 20 20 Cl 1.73592 * 119.97993 * 179.70323 * 19 17 16 21 21 C 1.38254 * 120.03563 * 359.68116 * 19 17 16 22 22 C 1.38287 * 120.08754 * 0.02562 * 21 19 17 23 23 Cl 1.73596 * 119.98297 * 179.97438 * 22 21 19 24 24 C 1.47429 * 125.64690 * 179.97438 * 9 7 2 25 25 H 0.97006 * 120.00190 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.88208 * 298.39483 * 10 9 7 27 27 H 1.08997 * 109.88548 * 59.56053 * 10 9 7 28 28 H 1.09001 * 110.84817 * 219.67673 * 11 10 9 29 29 H 1.08998 * 110.66835 * 96.52234 * 11 10 9 30 30 H 1.07994 * 120.03892 * 0.02562 * 16 15 14 31 31 H 0.96695 * 114.00356 * 270.29881 * 18 17 16 32 32 H 1.08004 * 119.95401 * 180.02562 * 21 19 17 33 33 H 1.09007 * 110.36355 * 322.93082 * 24 9 7 34 34 H 1.09002 * 110.36563 * 85.14317 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4000 5 1 3.5477 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5327 0.0064 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8519 -4.6562 -0.6104 13 1 0.8565 -4.5966 -1.6988 14 8 1.0248 -6.0055 -0.1728 15 6 1.8942 -6.7764 -0.8782 16 6 2.6477 -6.2164 -1.8983 17 6 3.5384 -7.0031 -2.6117 18 8 4.2830 -6.4547 -3.6081 19 6 3.6651 -8.3530 -2.3122 20 17 4.7748 -9.3404 -3.2105 21 6 2.9083 -8.9110 -1.2986 22 6 2.0236 -8.1264 -0.5817 23 17 1.0742 -8.8300 0.6900 24 6 1.9335 -3.7311 0.0005 25 1 -0.4851 0.8401 -0.0004 26 1 -0.5505 -2.0864 0.9110 27 1 -0.5613 -2.0503 -0.8743 28 1 -1.2986 -4.2516 -0.6754 29 1 -0.6331 -4.4203 0.9807 30 1 2.5449 -5.1673 -2.1330 31 1 3.8602 -6.4848 -4.4773 32 1 3.0083 -9.9611 -1.0665 33 1 2.8327 -3.7405 -0.6155 34 1 2.1687 -4.0410 1.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229405974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:54 Heat of formation + Delta-G solvation = -35.559522 kcal Electronic energy + Delta-G solvation = -21749.137495 eV Core-core repulsion = 18121.452829 eV Total energy + Delta-G solvation = -3627.684665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64911 -38.88183 -37.31122 -36.72945 -36.40590 -35.62688 -32.40132 -30.60778 -29.76751 -29.05122 -27.47434 -24.72129 -23.30622 -22.70740 -20.54902 -20.23145 -19.10901 -17.51088 -17.31170 -16.81335 -16.56880 -15.45001 -15.26588 -14.78101 -14.41948 -14.17927 -14.01215 -13.38429 -13.26271 -13.19805 -12.59767 -12.39352 -12.16241 -12.06086 -11.65160 -11.44927 -11.05244 -11.01385 -10.96547 -10.88964 -10.85311 -10.43048 -10.28502 -10.13197 -9.99496 -9.77679 -9.08410 -8.69855 -8.22845 -6.97076 -5.81001 -3.16114 0.67909 0.85669 1.71953 2.16399 3.03857 3.11782 3.36122 3.41555 3.43040 3.77756 4.42130 4.45110 4.71089 4.95665 5.03700 5.17400 5.29673 5.38655 5.43809 5.49326 5.55387 5.58965 5.80348 6.01058 6.12937 6.28074 6.32113 6.44220 6.53017 7.24426 7.35329 7.43829 7.46207 7.71362 8.13271 9.10783 9.70242 10.33572 11.30710 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.003583 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.113247 B = 7812.368126 C = 9120.214373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.133 4.133 12 C 0.061 3.939 13 H 0.083 0.917 14 O -0.285 6.285 15 C 0.177 3.823 16 C -0.215 4.215 17 C 0.167 3.833 18 O -0.482 6.482 19 C -0.100 4.100 20 Cl -0.055 7.055 21 C -0.051 4.051 22 C -0.077 4.077 23 Cl -0.045 7.045 24 C 0.118 3.882 25 H 0.254 0.746 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.397 0.603 32 H 0.151 0.849 33 H 0.044 0.956 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -18.857 -5.837 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.201 4.201 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.054 3.946 11 C -0.171 4.171 12 C 0.004 3.996 13 H 0.101 0.899 14 O -0.197 6.197 15 C 0.128 3.872 16 C -0.235 4.235 17 C 0.121 3.879 18 O -0.293 6.293 19 C -0.128 4.128 20 Cl -0.026 7.026 21 C -0.070 4.070 22 C -0.104 4.104 23 Cl -0.016 7.016 24 C -0.009 4.009 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.177 0.823 31 H 0.254 0.746 32 H 0.169 0.831 33 H 0.063 0.937 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.370 -18.689 -5.195 19.688 hybrid contribution 0.255 0.804 -0.464 0.962 sum 3.625 -17.886 -5.659 19.107 Atomic orbital electron populations 1.69931 1.04930 1.25313 1.56688 1.24813 0.95755 0.97763 1.01805 0.86084 0.78607 0.83172 0.77684 1.21465 1.20577 1.21567 1.19059 0.90530 0.82057 1.44437 0.90239 1.44332 1.01630 0.99488 1.87464 1.21229 0.84442 0.87079 1.01890 1.23038 0.94248 0.98781 1.01046 1.24033 0.99507 0.77078 0.98961 0.89885 1.86246 1.56729 1.24517 1.52170 1.18596 0.89393 0.89271 0.89918 1.21644 0.99409 1.02619 0.99808 1.17896 0.90423 0.88199 0.91419 1.84846 1.44281 1.81190 1.19009 1.20955 1.00086 0.91273 1.00493 1.98362 1.61162 1.69203 1.73898 1.20574 0.93136 1.00428 0.92887 1.19956 1.01628 0.90741 0.98120 1.98376 1.70784 1.83357 1.49123 1.21981 0.94086 0.86669 0.98185 0.93560 0.93101 0.92899 0.91142 0.90897 0.82294 0.74550 0.83132 0.93738 0.95031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.31 55.49 0.57 -25.68 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -14.91 3.39 -170.08 -0.58 -15.49 16 10 C 0.18 4.13 5.38 -3.06 -0.02 4.12 16 11 C -0.13 -2.39 6.68 -24.88 -0.17 -2.55 16 12 C 0.06 1.03 2.82 -24.59 -0.07 0.96 16 13 H 0.08 1.32 6.61 -51.93 -0.34 0.98 16 14 O -0.29 -4.53 9.41 -19.53 -0.18 -4.71 16 15 C 0.18 2.49 6.63 -39.22 -0.26 2.23 16 16 C -0.22 -2.84 8.66 -39.30 -0.34 -3.18 16 17 C 0.17 1.99 6.70 -39.22 -0.26 1.72 16 18 O -0.48 -5.17 12.96 -19.57 -0.25 -5.42 16 19 C -0.10 -1.12 6.33 -39.35 -0.25 -1.37 16 20 Cl -0.06 -0.56 28.50 -51.86 -1.48 -2.03 16 21 C -0.05 -0.55 9.60 -39.56 -0.38 -0.93 16 22 C -0.08 -0.97 6.33 -39.35 -0.25 -1.21 16 23 Cl -0.05 -0.56 28.49 -51.86 -1.48 -2.03 16 24 C 0.12 2.38 6.60 -2.54 -0.02 2.37 16 25 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.05 1.31 7.52 -51.93 -0.39 0.92 16 27 H 0.05 1.33 7.37 -51.93 -0.38 0.95 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.16 2.18 5.30 -52.49 -0.28 1.90 16 31 H 0.40 2.38 9.06 45.56 0.41 2.79 16 32 H 0.15 1.30 8.06 -52.48 -0.42 0.87 16 33 H 0.04 0.87 7.24 -51.92 -0.38 0.50 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -29.94 317.15 -8.50 -38.44 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -2.59 Total: 0.10 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.26 Total: -4.58 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.00 Total: -41.17 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.44 Total: -10.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -2.96 Total: -4.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.94 -8.50 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229405974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.876 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds