Wall clock time and date at job start Tue Mar 31 2020 11:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48493 * 109.47450 * 89.99656 * 3 2 1 5 5 H 1.48507 * 109.46863 * 209.99722 * 3 2 1 6 6 H 1.48500 * 109.47150 * 329.99226 * 3 2 1 7 7 C 1.38813 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00225 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.64966 * 359.69098 * 9 7 2 11 11 C 1.54341 * 107.26618 * 178.85053 * 10 9 7 12 12 C 1.55163 * 103.01703 * 338.13983 * 11 10 9 13 13 H 1.08998 * 111.00267 * 277.23095 * 12 11 10 14 14 O 1.42902 * 111.00296 * 153.38453 * 12 11 10 15 15 C 1.35934 * 116.99893 * 162.33873 * 14 12 11 16 16 C 1.38639 * 120.02266 * 5.30648 * 15 14 12 17 17 C 1.38605 * 119.91269 * 179.68070 * 16 15 14 18 18 O 1.35945 * 120.01525 * 180.31757 * 17 16 15 19 19 C 1.38854 * 119.96296 * 0.61641 * 17 16 15 20 20 Cl 1.73592 * 119.97993 * 179.70323 * 19 17 16 21 21 C 1.38254 * 120.03563 * 359.68116 * 19 17 16 22 22 C 1.38287 * 120.08754 * 0.02562 * 21 19 17 23 23 Cl 1.73596 * 119.98297 * 179.97438 * 22 21 19 24 24 C 1.47429 * 125.64690 * 179.97438 * 9 7 2 25 25 H 0.97006 * 120.00190 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.88208 * 298.39483 * 10 9 7 27 27 H 1.08997 * 109.88548 * 59.56053 * 10 9 7 28 28 H 1.09001 * 110.84817 * 219.67673 * 11 10 9 29 29 H 1.08998 * 110.66835 * 96.52234 * 11 10 9 30 30 H 1.07994 * 120.03892 * 0.02562 * 16 15 14 31 31 H 0.96695 * 114.00356 * 270.29881 * 18 17 16 32 32 H 1.08004 * 119.95401 * 180.02562 * 21 19 17 33 33 H 1.09007 * 110.36355 * 322.93082 * 24 9 7 34 34 H 1.09002 * 110.36563 * 85.14317 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4000 5 1 3.5477 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5327 0.0064 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8519 -4.6562 -0.6104 13 1 0.8565 -4.5966 -1.6988 14 8 1.0248 -6.0055 -0.1728 15 6 1.8942 -6.7764 -0.8782 16 6 2.6477 -6.2164 -1.8983 17 6 3.5384 -7.0031 -2.6117 18 8 4.2830 -6.4547 -3.6081 19 6 3.6651 -8.3530 -2.3122 20 17 4.7748 -9.3404 -3.2105 21 6 2.9083 -8.9110 -1.2986 22 6 2.0236 -8.1264 -0.5817 23 17 1.0742 -8.8300 0.6900 24 6 1.9335 -3.7311 0.0005 25 1 -0.4851 0.8401 -0.0004 26 1 -0.5505 -2.0864 0.9110 27 1 -0.5613 -2.0503 -0.8743 28 1 -1.2986 -4.2516 -0.6754 29 1 -0.6331 -4.4203 0.9807 30 1 2.5449 -5.1673 -2.1330 31 1 3.8602 -6.4848 -4.4773 32 1 3.0083 -9.9611 -1.0665 33 1 2.8327 -3.7405 -0.6155 34 1 2.1687 -4.0410 1.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229405974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:54 Heat of formation + Delta-G solvation = -54.310293 kcal Electronic energy + Delta-G solvation = -21749.950589 eV Core-core repulsion = 18121.452829 eV Total energy + Delta-G solvation = -3628.497760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71600 -40.02158 -38.50799 -37.73679 -37.51684 -36.65670 -34.30889 -31.65484 -31.26031 -30.34903 -29.04831 -26.57376 -24.40549 -23.73206 -22.17029 -21.78844 -20.14004 -19.07168 -18.49970 -17.87293 -17.72977 -16.76711 -16.61114 -16.38499 -15.67154 -15.58776 -15.20670 -14.72180 -14.45745 -14.25113 -14.13417 -13.89714 -13.52475 -13.22809 -13.00318 -12.93324 -12.69099 -12.35202 -12.19235 -12.13096 -12.04487 -11.92650 -11.80607 -11.74796 -11.60126 -11.36948 -10.74095 -10.02251 -9.24092 -8.97414 -7.88856 -5.26073 -0.24445 -0.09809 0.81443 1.23696 1.47033 1.48308 1.57046 1.88042 2.15208 2.48462 2.91921 3.30442 3.47305 3.56730 3.61691 3.82626 3.86806 3.98197 4.06834 4.36704 4.50236 4.55643 4.58577 4.64840 4.77532 4.86522 4.94928 4.98309 5.19937 5.41168 5.57808 5.69515 6.07475 6.17443 6.61884 7.05352 7.69803 8.32693 9.21331 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.003583 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.113247 B = 7812.368126 C = 9120.214373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.186 3.814 11 C -0.120 4.120 12 C 0.082 3.918 13 H 0.097 0.903 14 O -0.292 6.292 15 C 0.157 3.843 16 C -0.222 4.222 17 C 0.171 3.829 18 O -0.491 6.491 19 C -0.099 4.099 20 Cl -0.042 7.042 21 C -0.040 4.040 22 C -0.081 4.081 23 Cl -0.045 7.045 24 C 0.116 3.884 25 H 0.249 0.751 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.417 0.583 32 H 0.175 0.825 33 H 0.050 0.950 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 -20.553 -6.727 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.193 1.193 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.061 3.939 11 C -0.158 4.158 12 C 0.025 3.975 13 H 0.115 0.885 14 O -0.204 6.204 15 C 0.109 3.891 16 C -0.241 4.241 17 C 0.125 3.875 18 O -0.305 6.305 19 C -0.127 4.127 20 Cl -0.013 7.013 21 C -0.059 4.059 22 C -0.109 4.109 23 Cl -0.016 7.016 24 C -0.010 4.010 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.169 0.831 31 H 0.279 0.721 32 H 0.193 0.807 33 H 0.068 0.932 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.444 -20.429 -6.106 21.780 hybrid contribution 0.032 1.212 -0.235 1.235 sum 4.476 -19.217 -6.341 20.725 Atomic orbital electron populations 1.70137 1.06209 1.25569 1.57705 1.25625 0.96632 1.00907 1.02059 0.85082 0.77739 0.79040 0.77471 1.21404 1.19340 1.21776 1.19419 0.91012 0.83401 1.43855 0.90018 1.44598 1.02514 1.00572 1.87325 1.20966 0.83664 0.90430 0.98853 1.22846 0.95769 0.94881 1.02299 1.23619 0.97124 0.77448 0.99261 0.88492 1.86207 1.57714 1.23565 1.52864 1.18764 0.89946 0.89697 0.90681 1.21576 1.00052 1.02405 1.00080 1.17893 0.89783 0.88369 0.91470 1.84797 1.44529 1.81137 1.20053 1.21039 1.00006 0.91216 1.00410 1.98373 1.60641 1.68706 1.73548 1.20813 0.91885 1.01345 0.91886 1.20057 1.02047 0.90349 0.98418 1.98378 1.70845 1.83203 1.49137 1.22065 0.95342 0.85469 0.98080 0.94125 0.96673 0.95578 0.88384 0.90350 0.83106 0.72141 0.80734 0.93159 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.57 10.31 21.65 0.22 -55.34 16 2 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 3 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.25 -13.73 10.28 84.03 0.86 -12.87 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -31.42 3.39 -692.01 -2.35 -33.77 16 10 C 0.19 8.86 5.38 86.74 0.47 9.32 16 11 C -0.12 -4.23 6.68 31.79 0.21 -4.02 16 12 C 0.08 2.72 2.82 31.98 0.09 2.81 16 13 H 0.10 2.96 6.61 -2.39 -0.02 2.95 16 14 O -0.29 -8.87 9.41 -92.81 -0.87 -9.74 16 15 C 0.16 4.16 6.63 22.51 0.15 4.31 16 16 C -0.22 -5.51 8.66 22.45 0.19 -5.31 16 17 C 0.17 3.72 6.70 22.51 0.15 3.87 16 18 O -0.49 -9.43 12.96 -92.93 -1.20 -10.63 16 19 C -0.10 -1.95 6.33 22.42 0.14 -1.81 16 20 Cl -0.04 -0.73 28.50 -2.72 -0.08 -0.80 16 21 C -0.04 -0.76 9.60 22.29 0.21 -0.55 16 22 C -0.08 -1.88 6.33 22.42 0.14 -1.73 16 23 Cl -0.04 -1.01 28.49 -2.72 -0.08 -1.09 16 24 C 0.12 4.71 6.60 86.84 0.57 5.29 16 25 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 26 H 0.02 0.81 7.52 -2.39 -0.02 0.79 16 27 H 0.03 1.36 7.37 -2.39 -0.02 1.35 16 28 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.15 3.97 5.30 -2.91 -0.02 3.96 16 31 H 0.42 4.00 9.06 -74.06 -0.67 3.33 16 32 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.05 1.96 7.24 -2.38 -0.02 1.94 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.72 317.15 1.82 -62.90 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.49 Total: 4.99 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 3.66 Total: -3.50 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -2.13 Total: -89.11 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -2.08 Total: -20.37 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.16 Total: -1.90 kcal Total: -64.72 1.82 -62.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229405974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.592 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds