Wall clock time and date at job start Tue Mar 31 2020 11:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21300 * 120.00208 * 2 1 4 4 N 1.34779 * 120.00447 * 180.02562 * 2 1 3 5 5 C 1.40118 * 120.00045 * 184.49151 * 4 2 1 6 6 C 1.38716 * 120.08684 * 32.97195 * 5 4 2 7 7 C 1.38293 * 119.97101 * 180.27829 * 6 5 4 8 8 Cl 1.73608 * 119.92909 * 179.76706 * 7 6 5 9 9 C 1.38377 * 120.14147 * 359.74077 * 7 6 5 10 10 C 1.38247 * 120.16268 * 0.02562 * 9 7 6 11 11 C 1.38537 * 120.02698 * 359.97438 * 10 9 7 12 12 O 1.35994 * 120.06753 * 179.97438 * 11 10 9 13 13 C 1.42898 * 117.00261 * 4.70422 * 12 11 10 14 14 H 1.09001 * 109.46913 * 22.79881 * 13 12 11 15 15 C 1.50695 * 109.47734 * 142.79561 * 13 12 11 16 16 H 1.08003 * 119.99874 * 5.31239 * 15 13 12 17 17 C 1.37870 * 120.00492 * 185.30677 * 15 13 12 18 18 N 1.31523 * 120.00434 * 185.42229 * 17 15 13 19 19 Si 1.86802 * 119.99928 * 5.43048 * 17 15 13 20 20 H 1.48500 * 109.46797 * 269.99591 * 19 17 15 21 21 H 1.48498 * 109.47202 * 29.99421 * 19 17 15 22 22 H 1.48496 * 109.47265 * 149.99847 * 19 17 15 23 23 C 1.52996 * 109.47226 * 262.79952 * 13 12 11 24 24 Cl 1.80304 * 109.47113 * 64.13679 * 23 13 12 25 25 H 1.09004 * 109.46635 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47117 * 299.99723 * 1 2 3 27 27 H 1.09004 * 109.47071 * 59.99979 * 1 2 3 28 28 H 0.97005 * 119.99371 * 4.48443 * 4 2 1 29 29 H 1.08002 * 120.01283 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.92020 * 179.97438 * 9 7 6 31 31 H 1.08003 * 119.98126 * 179.97438 * 10 9 7 32 32 H 0.96999 * 119.99717 * 355.00032 * 18 17 15 33 33 H 1.08997 * 109.47356 * 184.13851 * 23 13 12 34 34 H 1.09000 * 109.46869 * 304.14020 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5789 -1.1690 0.0945 6 6 4.2270 -0.1896 0.8327 7 6 5.6072 -0.1903 0.9202 8 17 6.4175 1.0395 1.8394 9 6 6.3437 -1.1694 0.2770 10 6 5.7034 -2.1510 -0.4563 11 6 4.3211 -2.1569 -0.5485 12 8 3.6904 -3.1218 -1.2700 13 6 4.5064 -4.1573 -1.8213 14 1 5.4331 -4.2314 -1.2522 15 6 3.7683 -5.4693 -1.7519 16 1 2.7444 -5.4954 -1.4090 17 6 4.3998 -6.6363 -2.1261 18 7 3.7256 -7.7648 -2.1677 19 14 6.2132 -6.6148 -2.5740 20 1 6.3605 -6.3607 -4.0296 21 1 6.8985 -5.5401 -1.8120 22 1 6.8221 -7.9264 -2.2364 23 6 4.8288 -3.8301 -3.2807 24 17 5.8169 -2.3238 -3.3547 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6982 -2.0059 -0.0666 29 1 3.6542 0.5755 1.3356 30 1 7.4214 -1.1663 0.3473 31 1 6.2811 -2.9136 -0.9575 32 1 2.8040 -7.7905 -1.8661 33 1 5.3889 -4.6542 -3.7226 34 1 3.9010 -3.6836 -3.8337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229419082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:55 Heat of formation + Delta-G solvation = -83.867131 kcal Electronic energy + Delta-G solvation = -22195.130861 eV Core-core repulsion = 18565.351420 eV Total energy + Delta-G solvation = -3629.779440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86207 -40.43450 -38.75961 -37.35460 -36.78637 -35.76515 -35.36010 -32.42900 -31.91773 -30.69644 -29.26120 -26.82350 -24.98001 -23.63455 -22.38459 -21.44711 -20.14814 -19.38313 -18.36537 -18.05698 -17.04302 -16.72565 -16.45825 -16.13328 -15.86484 -15.61378 -15.13226 -14.90024 -14.66702 -14.61756 -14.29688 -14.08836 -13.45032 -13.36537 -13.24852 -13.08721 -13.03377 -12.68096 -12.33044 -12.16324 -11.97080 -11.83039 -11.57500 -11.36314 -11.19419 -10.92709 -10.89177 -10.78009 -9.58925 -9.01840 -8.75134 -6.65562 0.09071 0.19436 1.11469 1.25747 1.38514 1.45713 1.53128 1.58382 2.05112 2.30463 2.33091 2.60900 2.89136 3.71659 3.79081 3.90957 3.95768 4.05730 4.10738 4.26193 4.34709 4.47658 4.61732 4.62872 4.73326 4.88340 5.04909 5.10908 5.17858 5.29420 5.40679 5.59271 5.85261 6.21678 6.37933 6.59567 7.06495 7.15059 8.46306 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.005151 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.588311 B = 5434.931604 C = 6530.904591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.504 3.496 3 O -0.575 6.575 4 N -0.657 5.657 5 C 0.106 3.894 6 C -0.086 4.086 7 C -0.064 4.064 8 Cl -0.064 7.064 9 C -0.081 4.081 10 C -0.176 4.176 11 C 0.113 3.887 12 O -0.308 6.308 13 C 0.188 3.812 14 H 0.055 0.945 15 C -0.603 4.603 16 H 0.041 0.959 17 C -0.001 4.001 18 N -0.919 5.919 19 Si 1.056 2.944 20 H -0.250 1.250 21 H -0.242 1.242 22 H -0.278 1.278 23 C -0.049 4.049 24 Cl -0.201 7.201 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.424 0.576 29 H 0.143 0.857 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.262 0.738 33 H 0.098 0.902 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 12.279 4.104 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.295 3.705 3 O -0.454 6.454 4 N -0.304 5.304 5 C 0.011 3.989 6 C -0.107 4.107 7 C -0.092 4.092 8 Cl -0.035 7.035 9 C -0.100 4.100 10 C -0.196 4.196 11 C 0.065 3.935 12 O -0.221 6.221 13 C 0.132 3.868 14 H 0.073 0.927 15 C -0.640 4.640 16 H 0.059 0.941 17 C -0.202 4.202 18 N -0.552 5.552 19 Si 0.876 3.124 20 H -0.175 1.175 21 H -0.165 1.165 22 H -0.204 1.204 23 C -0.112 4.112 24 Cl -0.174 7.174 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.262 0.738 29 H 0.161 0.839 30 H 0.175 0.825 31 H 0.163 0.837 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.889 12.256 3.582 12.908 hybrid contribution -1.613 0.188 0.439 1.682 sum 0.275 12.445 4.021 13.081 Atomic orbital electron populations 1.21891 0.86720 1.06526 1.06693 1.21918 0.92723 0.82095 0.73761 1.90705 1.71692 1.32447 1.50563 1.43630 1.03915 1.10913 1.71899 1.16947 0.84191 0.97285 1.00527 1.20715 0.92932 0.98747 0.98295 1.20531 0.92017 0.94668 1.01956 1.98333 1.79054 1.53545 1.72606 1.20985 1.01260 0.92319 0.95430 1.21343 0.92833 1.02040 1.03350 1.19124 0.91609 0.90531 0.92231 1.86068 1.37655 1.34261 1.64120 1.20756 0.92815 0.84447 0.88829 0.92723 1.22033 1.00636 0.90986 1.50384 0.94080 1.26989 1.08996 0.91088 0.93175 1.70919 1.12238 1.28780 1.43287 0.83940 0.70864 0.78288 0.79334 1.17475 1.16534 1.20404 1.25833 0.97258 0.86343 1.01737 1.98681 1.75435 1.44453 1.98869 0.88117 0.86711 0.87392 0.73820 0.83905 0.82539 0.83703 0.92814 0.88402 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.39 71.24 0.74 -1.66 16 2 C 0.50 13.33 7.69 87.66 0.67 14.00 16 3 O -0.57 -19.63 14.74 -3.09 -0.05 -19.67 16 4 N -0.66 -18.71 5.21 -303.14 -1.58 -20.29 16 5 C 0.11 3.55 6.31 38.18 0.24 3.79 16 6 C -0.09 -2.77 8.44 22.40 0.19 -2.58 16 7 C -0.06 -1.92 6.32 22.32 0.14 -1.78 16 8 Cl -0.06 -1.66 28.95 -2.72 -0.08 -1.74 16 9 C -0.08 -2.35 9.82 22.30 0.22 -2.13 16 10 C -0.18 -5.86 7.12 22.34 0.16 -5.70 16 11 C 0.11 4.09 6.18 22.59 0.14 4.23 16 12 O -0.31 -12.35 9.22 -93.48 -0.86 -13.21 16 13 C 0.19 7.86 1.73 29.85 0.05 7.91 16 14 H 0.06 2.25 4.01 -2.39 -0.01 2.24 16 15 C -0.60 -30.33 9.24 25.60 0.24 -30.09 16 16 H 0.04 2.30 8.04 -2.91 -0.02 2.28 16 17 C 0.00 -0.05 5.43 84.65 0.46 0.41 16 18 N -0.92 -51.57 13.70 21.45 0.29 -51.27 16 19 Si 1.06 42.53 25.33 68.60 1.74 44.27 16 20 H -0.25 -9.09 6.77 99.48 0.67 -8.42 16 21 H -0.24 -8.53 6.36 99.48 0.63 -7.90 16 22 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 23 C -0.05 -1.84 5.94 71.98 0.43 -1.41 16 24 Cl -0.20 -6.79 25.55 -2.72 -0.07 -6.86 16 25 H 0.10 1.11 7.92 -2.38 -0.02 1.09 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.42 10.76 8.36 -92.70 -0.78 9.99 16 29 H 0.14 4.66 6.37 -2.91 -0.02 4.64 16 30 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 31 H 0.15 4.84 4.85 -2.91 -0.01 4.83 16 32 H 0.26 14.91 8.72 -92.71 -0.81 14.10 16 33 H 0.10 3.60 4.36 -2.39 -0.01 3.59 16 34 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 Total: -1.00 -61.29 312.64 3.33 -57.97 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.25 Total: 25.82 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 3.68 Total: -15.01 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -1.29 Total: -71.56 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.91 Total: -32.88 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.74 Total: 44.27 kcal Atomic # 17 Polarization: -8.46 SS G_CDS: -0.15 Total: -8.61 kcal Total: -61.29 3.33 -57.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229419082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.902 kcal (2) G-P(sol) polarization free energy of solvation -61.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds