Wall clock time and date at job start Tue Mar 31 2020 11:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99744 * 2 1 4 4 H 1.48500 * 109.47194 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47272 * 119.99544 * 3 2 1 6 6 H 1.48498 * 109.47388 * 239.99857 * 3 2 1 7 7 C 1.37870 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00260 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47375 * 180.02562 * 9 7 2 11 11 C 1.47481 * 110.99857 * 265.97015 * 10 9 7 12 12 C 1.53503 * 87.92991 * 221.29462 * 11 10 9 13 13 O 1.42901 * 114.17113 * 272.37642 * 12 11 10 14 14 C 1.36020 * 116.99764 * 250.57214 * 13 12 11 15 15 C 1.38559 * 120.05717 * 5.81776 * 14 13 12 16 16 C 1.38322 * 120.00084 * 180.02562 * 15 14 13 17 17 Cl 1.73606 * 119.94735 * 179.97438 * 16 15 14 18 18 C 1.38456 * 120.10965 * 359.96830 * 16 15 14 19 19 Cl 1.73600 * 119.94494 * 180.02562 * 18 16 15 20 20 C 1.38332 * 120.10986 * 0.05320 * 18 16 15 21 21 C 1.38561 * 119.99864 * 359.67206 * 20 18 16 22 22 O 1.36010 * 120.05978 * 180.31904 * 21 20 18 23 23 C 1.47471 * 110.99986 * 169.99786 * 10 9 7 24 24 H 0.97000 * 120.00732 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47052 * 299.99589 * 9 7 2 26 26 H 1.09000 * 109.47281 * 59.99987 * 9 7 2 27 27 H 1.09001 * 113.47462 * 336.06117 * 11 10 9 28 28 H 1.09006 * 113.47613 * 106.52461 * 11 10 9 29 29 H 1.09004 * 114.34219 * 139.68366 * 12 11 10 30 30 H 1.08000 * 119.99626 * 359.97076 * 15 14 13 31 31 H 1.07992 * 120.00200 * 179.97438 * 20 18 16 32 32 H 0.96696 * 114.00416 * 270.26177 * 22 21 20 33 33 H 1.09001 * 113.47927 * 253.46894 * 23 10 9 34 34 H 1.08998 * 113.48085 * 23.87751 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1029 1.6965 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 2.4768 -4.0809 -1.3713 12 6 2.4200 -5.5184 -0.8359 13 8 3.6683 -6.0088 -0.3427 14 6 4.2883 -6.9701 -1.0787 15 6 3.7706 -7.3447 -2.3081 16 6 4.4017 -8.3228 -3.0553 17 17 3.7515 -8.7915 -4.5953 18 6 5.5512 -8.9285 -2.5772 19 17 6.3402 -10.1551 -3.5189 20 6 6.0718 -8.5584 -1.3502 21 6 5.4464 -7.5752 -0.6005 22 8 5.9608 -7.2057 0.6032 23 6 1.5185 -4.8983 0.2409 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 0.8903 26 1 0.6248 -2.5571 -0.8897 27 1 1.6773 -3.8475 -2.0745 28 1 3.4612 -3.7936 -1.7408 29 1 1.9102 -6.2228 -1.4933 30 1 2.8738 -6.8735 -2.6825 31 1 6.9682 -9.0324 -0.9788 32 1 5.6216 -7.7180 1.3498 33 1 1.6909 -5.3041 1.2378 34 1 0.4632 -4.8829 -0.0311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229553490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:38 Heat of formation + Delta-G solvation = -19.005032 kcal Electronic energy + Delta-G solvation = -21229.931575 eV Core-core repulsion = 17602.964766 eV Total energy + Delta-G solvation = -3626.966809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94939 -39.50886 -37.63938 -37.19123 -36.78478 -35.84439 -32.91034 -30.76410 -29.90870 -28.91789 -25.77546 -25.42041 -23.61027 -22.85261 -21.65685 -19.83539 -19.08022 -17.86617 -16.94743 -16.47060 -16.30040 -15.92525 -15.25765 -15.02497 -14.79148 -14.44663 -14.02566 -13.75719 -13.57077 -13.31640 -13.29800 -12.50384 -12.18524 -12.10809 -12.00726 -11.45596 -11.33290 -11.20778 -11.13178 -10.94331 -10.90240 -10.59209 -10.39015 -10.16087 -9.74927 -9.33234 -9.23256 -8.47126 -8.32693 -7.95039 -6.07401 -4.08681 0.54449 0.71916 1.52845 1.86787 2.87240 2.96109 3.32878 3.36133 3.40320 3.84099 4.23352 4.38913 4.47563 4.58316 4.64527 4.94567 4.98755 5.12425 5.27785 5.29722 5.41455 5.55086 5.71160 5.76009 5.88832 6.00108 6.06536 6.21240 6.50894 7.03787 7.11223 7.45463 7.57352 7.79160 8.03320 8.39161 8.98843 9.55866 11.03649 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002786 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.341244 B =10048.157286 C =10479.003520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.156 3.844 10 N -0.455 5.455 11 C -0.005 4.005 12 C 0.035 3.965 13 O -0.255 6.255 14 C 0.136 3.864 15 C -0.183 4.183 16 C 0.004 3.996 17 Cl -0.045 7.045 18 C -0.061 4.061 19 Cl -0.050 7.050 20 C -0.087 4.087 21 C 0.091 3.909 22 O -0.474 6.474 23 C 0.003 3.997 24 H 0.262 0.738 25 H 0.031 0.969 26 H 0.005 0.995 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.392 0.608 33 H 0.086 0.914 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -22.350 -5.288 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.030 3.970 10 N -0.178 5.178 11 C -0.134 4.134 12 C -0.021 4.021 13 O -0.166 6.166 14 C 0.088 3.912 15 C -0.202 4.202 16 C -0.024 4.024 17 Cl -0.016 7.016 18 C -0.089 4.089 19 Cl -0.022 7.022 20 C -0.107 4.107 21 C 0.044 3.956 22 O -0.284 6.284 23 C -0.127 4.127 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.248 0.752 33 H 0.104 0.896 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.868 -21.585 -5.192 23.907 hybrid contribution -0.769 0.387 -0.626 1.064 sum 8.099 -21.198 -5.818 23.427 Atomic orbital electron populations 1.69936 1.06078 1.27019 1.51042 1.24998 0.94901 0.99433 0.95319 0.86520 0.79420 0.82475 0.78790 1.21325 1.20067 1.20211 1.21052 0.93643 0.89677 1.50071 0.91827 1.20311 0.90655 0.89249 0.96757 1.69129 1.33321 1.01391 1.13926 1.24257 1.03157 0.91372 0.94655 1.23909 0.83613 0.95738 0.98854 1.86346 1.34524 1.49211 1.46549 1.19499 0.91722 0.89516 0.90495 1.21072 1.03717 1.00737 0.94696 1.20446 0.94641 0.97708 0.89568 1.98399 1.85341 1.91106 1.26730 1.20317 0.95930 0.97671 0.94981 1.98381 1.79438 1.52496 1.71836 1.21036 1.00739 0.96145 0.92756 1.17535 0.92121 0.96200 0.89709 1.84956 1.67463 1.62035 1.13935 1.23999 0.96206 0.93243 0.99228 0.92810 0.95100 0.97771 0.90285 0.89757 0.89384 0.82664 0.82818 0.75207 0.89564 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.40 9.39 -34.44 -0.32 -14.72 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.16 3.99 4.57 -4.97 -0.02 3.96 16 10 N -0.45 -9.71 6.32 -246.14 -1.55 -11.26 16 11 C 0.00 -0.09 7.55 -7.55 -0.06 -0.14 16 12 C 0.04 0.51 4.07 -26.21 -0.11 0.40 16 13 O -0.25 -3.83 9.97 -34.35 -0.34 -4.17 16 14 C 0.14 1.71 6.69 -39.13 -0.26 1.45 16 15 C -0.18 -2.05 8.80 -39.43 -0.35 -2.40 16 16 C 0.00 0.05 6.32 -39.47 -0.25 -0.20 16 17 Cl -0.04 -0.46 27.95 -51.86 -1.45 -1.91 16 18 C -0.06 -0.62 6.32 -39.47 -0.25 -0.87 16 19 Cl -0.05 -0.47 27.95 -51.86 -1.45 -1.92 16 20 C -0.09 -0.84 9.76 -39.43 -0.38 -1.23 16 21 C 0.09 1.03 6.72 -39.13 -0.26 0.76 16 22 O -0.47 -5.24 13.29 -34.32 -0.46 -5.70 16 23 C 0.00 0.04 7.52 -7.55 -0.06 -0.01 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.00 0.12 7.30 -51.93 -0.38 -0.26 16 27 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.09 0.99 5.91 -51.93 -0.31 0.68 16 30 H 0.16 1.59 5.88 -52.49 -0.31 1.28 16 31 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.39 2.43 9.06 45.56 0.41 2.84 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -31.90 324.82 -9.67 -41.57 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.61 Total: -0.93 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.42 Total: -11.54 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.82 Total: -37.11 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.80 Total: -9.87 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.90 Total: -3.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.90 -9.67 -41.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229553490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.566 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds