Wall clock time and date at job start Tue Mar 31 2020 11:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99744 * 2 1 4 4 H 1.48500 * 109.47194 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47272 * 119.99544 * 3 2 1 6 6 H 1.48498 * 109.47388 * 239.99857 * 3 2 1 7 7 C 1.37870 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00260 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47375 * 180.02562 * 9 7 2 11 11 C 1.47481 * 110.99857 * 265.97015 * 10 9 7 12 12 C 1.53503 * 87.92991 * 221.29462 * 11 10 9 13 13 O 1.42901 * 114.17113 * 272.37642 * 12 11 10 14 14 C 1.36020 * 116.99764 * 250.57214 * 13 12 11 15 15 C 1.38559 * 120.05717 * 5.81776 * 14 13 12 16 16 C 1.38322 * 120.00084 * 180.02562 * 15 14 13 17 17 Cl 1.73606 * 119.94735 * 179.97438 * 16 15 14 18 18 C 1.38456 * 120.10965 * 359.96830 * 16 15 14 19 19 Cl 1.73600 * 119.94494 * 180.02562 * 18 16 15 20 20 C 1.38332 * 120.10986 * 0.05320 * 18 16 15 21 21 C 1.38561 * 119.99864 * 359.67206 * 20 18 16 22 22 O 1.36010 * 120.05978 * 180.31904 * 21 20 18 23 23 C 1.47471 * 110.99986 * 169.99786 * 10 9 7 24 24 H 0.97000 * 120.00732 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47052 * 299.99589 * 9 7 2 26 26 H 1.09000 * 109.47281 * 59.99987 * 9 7 2 27 27 H 1.09001 * 113.47462 * 336.06117 * 11 10 9 28 28 H 1.09006 * 113.47613 * 106.52461 * 11 10 9 29 29 H 1.09004 * 114.34219 * 139.68366 * 12 11 10 30 30 H 1.08000 * 119.99626 * 359.97076 * 15 14 13 31 31 H 1.07992 * 120.00200 * 179.97438 * 20 18 16 32 32 H 0.96696 * 114.00416 * 270.26177 * 22 21 20 33 33 H 1.09001 * 113.47927 * 253.46894 * 23 10 9 34 34 H 1.08998 * 113.48085 * 23.87751 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1029 1.6965 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 2.4768 -4.0809 -1.3713 12 6 2.4200 -5.5184 -0.8359 13 8 3.6683 -6.0088 -0.3427 14 6 4.2883 -6.9701 -1.0787 15 6 3.7706 -7.3447 -2.3081 16 6 4.4017 -8.3228 -3.0553 17 17 3.7515 -8.7915 -4.5953 18 6 5.5512 -8.9285 -2.5772 19 17 6.3402 -10.1551 -3.5189 20 6 6.0718 -8.5584 -1.3502 21 6 5.4464 -7.5752 -0.6005 22 8 5.9608 -7.2057 0.6032 23 6 1.5185 -4.8983 0.2409 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 0.8903 26 1 0.6248 -2.5571 -0.8897 27 1 1.6773 -3.8475 -2.0745 28 1 3.4612 -3.7936 -1.7408 29 1 1.9102 -6.2228 -1.4933 30 1 2.8738 -6.8735 -2.6825 31 1 6.9682 -9.0324 -0.9788 32 1 5.6216 -7.7180 1.3498 33 1 1.6909 -5.3041 1.2378 34 1 0.4632 -4.8829 -0.0311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229553490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:37 Heat of formation + Delta-G solvation = -41.934401 kcal Electronic energy + Delta-G solvation = -21230.925867 eV Core-core repulsion = 17602.964766 eV Total energy + Delta-G solvation = -3627.961101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99259 -40.67712 -38.50561 -38.25450 -37.57892 -36.69587 -35.02058 -31.61686 -31.40189 -30.08789 -27.44749 -26.88035 -24.77901 -23.72593 -23.32794 -21.04064 -19.99315 -18.83302 -18.55285 -17.85466 -17.25668 -17.17663 -16.63353 -16.22717 -16.04336 -15.78016 -15.16122 -14.99600 -14.76399 -14.61775 -14.12894 -13.97460 -13.63233 -13.49905 -12.94947 -12.90435 -12.85071 -12.37164 -12.36002 -12.21065 -12.02410 -11.95868 -11.78130 -11.54400 -11.39694 -11.23295 -10.62718 -10.04304 -9.61499 -9.22533 -8.24594 -6.34323 -0.27440 -0.11854 0.72958 1.06354 1.38813 1.41552 1.49891 1.84929 2.13192 2.38161 3.05920 3.07558 3.22942 3.27883 3.45211 3.66606 3.85724 4.10307 4.24059 4.37982 4.41676 4.43180 4.59629 4.62200 4.67227 4.76283 4.82777 4.92155 5.02795 5.21089 5.56223 5.76622 6.04320 6.14732 6.43471 6.76919 6.79293 7.35212 8.85992 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002786 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.341244 B =10048.157286 C =10479.003520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.172 3.828 10 N -0.486 5.486 11 C -0.011 4.011 12 C 0.064 3.936 13 O -0.277 6.277 14 C 0.113 3.887 15 C -0.179 4.179 16 C -0.004 4.004 17 Cl -0.041 7.041 18 C -0.060 4.060 19 Cl -0.041 7.041 20 C -0.080 4.080 21 C 0.091 3.909 22 O -0.490 6.490 23 C 0.001 3.999 24 H 0.266 0.734 25 H 0.005 0.995 26 H -0.010 1.010 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.131 -23.486 -5.848 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.045 3.955 10 N -0.209 5.209 11 C -0.140 4.140 12 C 0.007 3.993 13 O -0.189 6.189 14 C 0.066 3.934 15 C -0.198 4.198 16 C -0.032 4.032 17 Cl -0.011 7.011 18 C -0.088 4.088 19 Cl -0.012 7.012 20 C -0.099 4.099 21 C 0.044 3.956 22 O -0.303 6.303 23 C -0.128 4.128 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.007 0.993 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.182 0.818 31 H 0.194 0.806 32 H 0.271 0.729 33 H 0.110 0.890 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.883 -22.756 -5.747 25.467 hybrid contribution -1.011 0.614 -0.460 1.269 sum 8.872 -22.143 -6.207 24.648 Atomic orbital electron populations 1.70039 1.07469 1.28091 1.51541 1.25859 0.95801 1.03015 0.94661 0.85483 0.78275 0.78129 0.79037 1.20357 1.19587 1.19394 1.21383 0.93395 0.91532 1.50459 0.92906 1.19967 0.90624 0.90265 0.94648 1.69017 1.33105 1.02147 1.16655 1.24298 1.02596 0.93992 0.93119 1.23621 0.83530 0.94629 0.97476 1.86303 1.34828 1.50350 1.47436 1.19691 0.92574 0.89969 0.91205 1.21109 1.03882 1.00602 0.94210 1.20514 0.94971 0.97867 0.89840 1.98401 1.85313 1.91038 1.26380 1.20463 0.95694 0.97496 0.95125 1.98389 1.79195 1.52043 1.71622 1.21208 1.01050 0.95441 0.92156 1.17687 0.91703 0.96167 0.90012 1.84897 1.67779 1.62981 1.14654 1.24070 0.97191 0.90869 1.00626 0.92507 0.97702 0.99276 0.89821 0.90889 0.85477 0.81844 0.80573 0.72933 0.88976 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.44 0.28 -55.38 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -30.84 9.39 25.60 0.24 -30.59 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.17 9.05 4.57 85.56 0.39 9.44 16 10 N -0.49 -21.10 6.32 -933.03 -5.89 -26.99 16 11 C -0.01 -0.38 7.55 83.57 0.63 0.25 16 12 C 0.06 1.75 4.07 30.94 0.13 1.88 16 13 O -0.28 -8.01 9.97 -79.87 -0.80 -8.81 16 14 C 0.11 2.67 6.69 22.56 0.15 2.82 16 15 C -0.18 -3.67 8.80 22.37 0.20 -3.47 16 16 C 0.00 -0.08 6.32 22.34 0.14 0.06 16 17 Cl -0.04 -0.75 27.95 -2.72 -0.08 -0.82 16 18 C -0.06 -1.09 6.32 22.34 0.14 -0.95 16 19 Cl -0.04 -0.69 27.95 -2.72 -0.08 -0.77 16 20 C -0.08 -1.35 9.76 22.37 0.22 -1.13 16 21 C 0.09 1.90 6.72 22.56 0.15 2.05 16 22 O -0.49 -10.09 13.29 -79.76 -1.06 -11.15 16 23 C 0.00 0.04 7.52 83.57 0.63 0.67 16 24 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 25 H 0.00 0.28 8.08 -2.39 -0.02 0.26 16 26 H -0.01 -0.57 7.30 -2.39 -0.02 -0.59 16 27 H 0.08 2.87 7.42 -2.39 -0.02 2.85 16 28 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 29 H 0.13 2.51 5.91 -2.38 -0.01 2.50 16 30 H 0.16 2.96 5.88 -2.91 -0.02 2.94 16 31 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.41 4.45 9.06 -74.06 -0.67 3.78 16 33 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.09 2.78 7.91 -2.39 -0.02 2.76 16 Total: -1.00 -68.94 324.82 -1.62 -70.56 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.49 Total: 4.63 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 3.48 Total: -18.22 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -5.61 Total: -82.38 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.86 Total: -19.96 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.15 Total: -1.59 kcal Total: -68.94 -1.62 -70.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229553490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.624 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds