Wall clock time and date at job start Tue Mar 31 2020 11:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47551 * 275.38136 * 3 2 1 5 5 H 1.48496 * 109.46792 * 35.38471 * 3 2 1 6 6 H 1.48505 * 109.46931 * 155.37876 * 3 2 1 7 7 C 1.39866 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00453 * 341.33477 * 7 2 1 9 9 C 1.41391 * 119.99871 * 161.60274 * 7 2 1 10 10 C 1.40842 * 120.56067 * 150.59658 * 9 7 2 11 11 N 1.31518 * 120.73096 * 179.97438 * 10 9 7 12 12 C 1.32132 * 122.09629 * 0.02562 * 11 10 9 13 13 F 1.35093 * 119.47699 * 180.02562 * 12 11 10 14 14 C 1.40250 * 121.05295 * 0.02763 * 12 11 10 15 15 C 1.48040 * 120.43762 * 180.02562 * 14 12 11 16 16 C 1.38089 * 120.66972 * 245.00016 * 15 14 12 17 17 C 1.39202 * 121.43854 * 180.02562 * 16 15 14 18 18 C 1.35747 * 122.52369 * 0.02562 * 17 16 15 19 19 Cl 1.73594 * 119.78207 * 179.97438 * 18 17 16 20 20 C 1.41159 * 120.44005 * 359.97438 * 18 17 16 21 21 C 1.38255 * 134.87084 * 179.97438 * 20 18 17 22 22 N 1.34031 * 107.88327 * 180.02562 * 21 20 18 23 23 H 0.97009 * 125.04030 * 180.02562 * 22 21 20 24 24 N 1.39980 * 109.92088 * 359.97438 * 22 21 20 25 25 C 1.31678 * 108.96106 * 359.72210 * 24 22 21 26 26 C 1.39175 * 119.12556 * 359.64925 * 14 12 11 27 27 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.63182 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.27829 * 359.97151 * 16 15 14 30 30 H 1.08000 * 118.73371 * 179.97438 * 17 16 15 31 31 H 1.08003 * 126.06166 * 0.02562 * 21 20 18 32 32 H 1.08000 * 120.94065 * 180.34093 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3767 2.1121 -1.3938 5 1 1.5018 2.6170 0.8107 6 1 3.5926 1.4099 0.5833 7 6 2.0081 -1.2113 -0.0005 8 1 1.5107 -2.1222 0.2984 9 6 3.3678 -1.2424 -0.3870 10 6 4.2426 -2.2076 0.1485 11 7 5.5078 -2.2399 -0.2090 12 6 6.0147 -1.3808 -1.0755 13 9 7.3222 -1.4626 -1.4055 14 6 5.2171 -0.3852 -1.6582 15 6 5.7990 0.5700 -2.6280 16 6 5.8748 1.9165 -2.3315 17 6 6.4183 2.8287 -3.2316 18 6 6.9025 2.4574 -4.4442 19 17 7.5645 3.6554 -5.5120 20 6 6.8712 1.1036 -4.8428 21 6 7.2673 0.4096 -5.9710 22 7 6.9811 -0.8857 -5.7790 23 1 7.1563 -1.5953 -6.4168 24 7 6.3929 -1.0628 -4.5212 25 6 6.3118 0.1051 -3.9185 26 6 3.8693 -0.3120 -1.3187 27 1 -0.4850 0.8401 0.0004 28 1 3.8700 -2.9297 0.8600 29 1 5.5034 2.2697 -1.3808 30 1 6.4555 3.8720 -2.9548 31 1 7.7261 0.8355 -6.8510 32 1 3.2271 0.4393 -1.7538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244398132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:50 Heat of formation + Delta-G solvation = 68.499695 kcal Electronic energy + Delta-G solvation = -23075.067078 eV Core-core repulsion = 19363.160054 eV Total energy + Delta-G solvation = -3711.907023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.043 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.66318 -41.19770 -38.66696 -37.35828 -36.21373 -34.07937 -32.79742 -31.39260 -30.90940 -29.97065 -27.89720 -25.44413 -24.39133 -22.70539 -21.89431 -21.68630 -19.87095 -18.30905 -17.62396 -16.97335 -16.84863 -16.01791 -16.00090 -15.26091 -14.97303 -14.87119 -14.42006 -14.31886 -13.39481 -13.27517 -13.08329 -12.83243 -12.50533 -12.35815 -12.15064 -12.03117 -12.00372 -11.40388 -11.23463 -11.07629 -10.95605 -10.68346 -10.38256 -10.16920 -9.99033 -9.58754 -8.91098 -8.65608 -8.48755 -7.89043 -7.36995 -7.20192 -4.72263 0.45763 1.79368 2.00780 2.05712 2.32246 2.38693 2.66475 2.93658 3.03561 3.12630 3.70588 3.76729 4.20185 4.26771 4.47211 4.88912 5.02738 5.05198 5.14997 5.20197 5.34106 5.62985 5.76530 5.94514 6.08537 6.17783 6.28216 6.39030 6.57787 6.65516 6.73724 6.94185 6.98978 7.08175 7.33517 7.56403 7.66094 8.04530 8.18194 8.46714 9.00813 9.80356 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.005084 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.977697 B = 5505.731493 C = 6597.955674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.084 3.916 3 Si 0.898 3.102 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.241 1.241 7 C -0.424 4.424 8 H 0.101 0.899 9 C 0.035 3.965 10 C 0.039 3.961 11 N -0.483 5.483 12 C 0.176 3.824 13 F -0.139 7.139 14 C -0.073 4.073 15 C 0.015 3.985 16 C -0.082 4.082 17 C -0.123 4.123 18 C 0.028 3.972 19 Cl -0.081 7.081 20 C -0.203 4.203 21 C 0.087 3.913 22 N -0.429 5.429 23 H 0.445 0.555 24 N -0.271 5.271 25 C 0.130 3.870 26 C -0.170 4.170 27 H 0.290 0.710 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.188 0.812 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 6.834 -10.668 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.453 4.453 8 H 0.119 0.881 9 C 0.030 3.970 10 C -0.125 4.125 11 N -0.195 5.195 12 C 0.025 3.975 13 F -0.119 7.119 14 C -0.077 4.077 15 C 0.011 3.989 16 C -0.104 4.104 17 C -0.144 4.144 18 C -0.001 4.001 19 Cl -0.052 7.052 20 C -0.214 4.214 21 C -0.069 4.069 22 N -0.130 5.130 23 H 0.289 0.711 24 N -0.097 5.097 25 C -0.028 4.028 26 C -0.195 4.195 27 H 0.101 0.899 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.205 0.795 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.104 5.110 -10.336 15.331 hybrid contribution 0.189 1.919 -1.058 2.200 sum 10.293 7.030 -11.394 16.888 Atomic orbital electron populations 1.69693 1.08077 1.30831 1.32649 1.26188 0.94813 1.01849 0.90892 0.86491 0.81662 0.79960 0.79625 1.18700 1.20915 1.16417 1.19431 0.92404 0.96584 1.36833 0.88146 1.18552 0.94562 0.92572 0.91297 1.22454 0.86189 1.02086 1.01734 1.66358 1.16960 1.23573 1.12561 1.17444 0.79298 0.97985 1.02800 1.91427 1.33008 1.96127 1.91349 1.18808 0.94323 0.96231 0.98325 1.18794 0.98152 0.92619 0.89357 1.20894 0.99031 0.90919 0.99557 1.20258 1.01163 1.00522 0.92439 1.19752 1.01304 0.86753 0.92267 1.98340 1.84521 1.56607 1.65762 1.19125 1.12824 0.93179 0.96255 1.22567 1.00167 0.84908 0.99272 1.46374 1.44114 1.07462 1.15053 0.71087 1.77755 1.20545 1.19611 0.91790 1.21797 0.97235 0.89493 0.94236 1.21360 0.92838 1.03931 1.01369 0.89914 0.83545 0.84492 0.84854 0.79486 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.40 13.93 55.54 0.77 -18.63 16 2 C 0.08 2.02 5.41 -17.35 -0.09 1.93 16 3 Si 0.90 18.79 24.54 -169.99 -4.17 14.62 16 4 H -0.26 -5.28 6.70 56.52 0.38 -4.90 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.24 -5.12 6.87 56.52 0.39 -4.74 16 7 C -0.42 -10.50 9.59 -37.77 -0.36 -10.86 16 8 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.04 0.85 5.11 -106.71 -0.55 0.30 16 10 C 0.04 0.91 10.96 -16.70 -0.18 0.73 16 11 N -0.48 -11.68 10.33 -12.53 -0.13 -11.81 16 12 C 0.18 4.20 8.40 -16.67 -0.14 4.06 16 13 F -0.14 -3.26 16.75 2.25 0.04 -3.22 16 14 C -0.07 -1.65 5.40 -104.77 -0.57 -2.21 16 15 C 0.01 0.29 5.17 -102.63 -0.53 -0.24 16 16 C -0.08 -1.38 9.67 -39.28 -0.38 -1.76 16 17 C -0.12 -1.75 9.59 -40.12 -0.38 -2.13 16 18 C 0.03 0.39 6.32 -39.37 -0.25 0.14 16 19 Cl -0.08 -0.90 28.86 -51.86 -1.50 -2.40 16 20 C -0.20 -3.01 6.18 -105.18 -0.65 -3.66 16 21 C 0.09 0.96 11.97 -16.59 -0.20 0.76 16 22 N -0.43 -5.12 7.19 30.85 0.22 -4.90 16 23 H 0.44 3.34 8.96 -182.68 -1.64 1.71 16 24 N -0.27 -4.86 12.68 34.32 0.44 -4.43 16 25 C 0.13 2.41 7.38 -81.03 -0.60 1.81 16 26 C -0.17 -3.95 7.01 -38.23 -0.27 -4.21 16 27 H 0.29 6.42 8.30 -40.82 -0.34 6.09 16 28 H 0.15 3.03 8.06 -52.49 -0.42 2.61 16 29 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.19 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.12 2.73 4.81 -52.49 -0.25 2.48 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -29.77 305.48 -8.05 -37.82 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.18 Total: 3.70 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -5.15 Total: -15.36 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 1.30 Total: -39.76 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.17 Total: 14.62 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.77 -8.05 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244398132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.322 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds