Wall clock time and date at job start Tue Mar 31 2020 11:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47551 * 275.38136 * 3 2 1 5 5 H 1.48496 * 109.46792 * 35.38471 * 3 2 1 6 6 H 1.48505 * 109.46931 * 155.37876 * 3 2 1 7 7 C 1.39866 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00453 * 341.33477 * 7 2 1 9 9 C 1.41391 * 119.99871 * 161.60274 * 7 2 1 10 10 C 1.40842 * 120.56067 * 150.59658 * 9 7 2 11 11 N 1.31518 * 120.73096 * 179.97438 * 10 9 7 12 12 C 1.32132 * 122.09629 * 0.02562 * 11 10 9 13 13 F 1.35093 * 119.47699 * 180.02562 * 12 11 10 14 14 C 1.40250 * 121.05295 * 0.02763 * 12 11 10 15 15 C 1.48040 * 120.43762 * 180.02562 * 14 12 11 16 16 C 1.38089 * 120.66972 * 245.00016 * 15 14 12 17 17 C 1.39202 * 121.43854 * 180.02562 * 16 15 14 18 18 C 1.35747 * 122.52369 * 0.02562 * 17 16 15 19 19 Cl 1.73594 * 119.78207 * 179.97438 * 18 17 16 20 20 C 1.41159 * 120.44005 * 359.97438 * 18 17 16 21 21 C 1.38255 * 134.87084 * 179.97438 * 20 18 17 22 22 N 1.34031 * 107.88327 * 180.02562 * 21 20 18 23 23 H 0.97009 * 125.04030 * 180.02562 * 22 21 20 24 24 N 1.39980 * 109.92088 * 359.97438 * 22 21 20 25 25 C 1.31678 * 108.96106 * 359.72210 * 24 22 21 26 26 C 1.39175 * 119.12556 * 359.64925 * 14 12 11 27 27 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.63182 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.27829 * 359.97151 * 16 15 14 30 30 H 1.08000 * 118.73371 * 179.97438 * 17 16 15 31 31 H 1.08003 * 126.06166 * 0.02562 * 21 20 18 32 32 H 1.08000 * 120.94065 * 180.34093 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3767 2.1121 -1.3938 5 1 1.5018 2.6170 0.8107 6 1 3.5926 1.4099 0.5833 7 6 2.0081 -1.2113 -0.0005 8 1 1.5107 -2.1222 0.2984 9 6 3.3678 -1.2424 -0.3870 10 6 4.2426 -2.2076 0.1485 11 7 5.5078 -2.2399 -0.2090 12 6 6.0147 -1.3808 -1.0755 13 9 7.3222 -1.4626 -1.4055 14 6 5.2171 -0.3852 -1.6582 15 6 5.7990 0.5700 -2.6280 16 6 5.8748 1.9165 -2.3315 17 6 6.4183 2.8287 -3.2316 18 6 6.9025 2.4574 -4.4442 19 17 7.5645 3.6554 -5.5120 20 6 6.8712 1.1036 -4.8428 21 6 7.2673 0.4096 -5.9710 22 7 6.9811 -0.8857 -5.7790 23 1 7.1563 -1.5953 -6.4168 24 7 6.3929 -1.0628 -4.5212 25 6 6.3118 0.1051 -3.9185 26 6 3.8693 -0.3120 -1.3187 27 1 -0.4850 0.8401 0.0004 28 1 3.8700 -2.9297 0.8600 29 1 5.5034 2.2697 -1.3808 30 1 6.4555 3.8720 -2.9548 31 1 7.7261 0.8355 -6.8510 32 1 3.2271 0.4393 -1.7538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244398132.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:49 Heat of formation + Delta-G solvation = 49.887389 kcal Electronic energy + Delta-G solvation = -23075.874168 eV Core-core repulsion = 19363.160054 eV Total energy + Delta-G solvation = -3712.714113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.043 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.49620 -42.28401 -40.42681 -38.47628 -37.30439 -35.92824 -34.21631 -33.04447 -32.22183 -31.21688 -29.22131 -27.30655 -25.65279 -24.30850 -23.38868 -22.99552 -21.18656 -19.62177 -19.16470 -18.71130 -18.03795 -17.79776 -17.28485 -16.83442 -16.62480 -16.00581 -15.73345 -15.69617 -15.17011 -14.84531 -14.33004 -14.21260 -14.14224 -13.90539 -13.80925 -13.47178 -13.23797 -12.99233 -12.74899 -12.51520 -12.24928 -12.06027 -11.87202 -11.53327 -11.37743 -11.10148 -10.47284 -10.33045 -9.93796 -9.64580 -9.03645 -8.60290 -6.63207 -0.67378 0.26827 0.52247 0.68679 1.00834 1.21337 1.25000 1.35923 1.45535 1.75095 2.05853 2.39511 2.53624 3.11242 3.14023 3.21450 3.46147 3.79711 3.98613 4.06703 4.10523 4.28016 4.32194 4.52493 4.63713 4.73264 4.83642 5.03737 5.15382 5.15785 5.25863 5.36947 5.49296 5.62028 5.81387 6.12327 6.18322 6.33221 6.46764 6.58346 7.16146 8.01780 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.005084 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.977697 B = 5505.731493 C = 6597.955674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.056 3.944 3 Si 0.941 3.059 4 H -0.248 1.248 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.448 4.448 8 H 0.080 0.920 9 C 0.030 3.970 10 C 0.029 3.971 11 N -0.498 5.498 12 C 0.158 3.842 13 F -0.141 7.141 14 C -0.057 4.057 15 C -0.048 4.048 16 C -0.061 4.061 17 C -0.146 4.146 18 C 0.050 3.950 19 Cl -0.048 7.048 20 C -0.233 4.233 21 C 0.132 3.868 22 N -0.411 5.411 23 H 0.463 0.537 24 N -0.334 5.334 25 C 0.110 3.890 26 C -0.180 4.180 27 H 0.301 0.699 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.243 0.757 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 9.406 -13.273 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.173 1.173 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.476 4.476 8 H 0.098 0.902 9 C 0.025 3.975 10 C -0.134 4.134 11 N -0.209 5.209 12 C 0.007 3.993 13 F -0.120 7.120 14 C -0.060 4.060 15 C -0.052 4.052 16 C -0.083 4.083 17 C -0.167 4.167 18 C 0.021 3.979 19 Cl -0.019 7.019 20 C -0.244 4.244 21 C -0.027 4.027 22 N -0.113 5.113 23 H 0.312 0.688 24 N -0.161 5.161 25 C -0.046 4.046 26 C -0.205 4.205 27 H 0.112 0.888 28 H 0.181 0.819 29 H 0.158 0.842 30 H 0.180 0.820 31 H 0.259 0.741 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.879 7.650 -12.948 19.164 hybrid contribution -0.202 1.144 -0.485 1.259 sum 11.677 8.794 -13.433 19.853 Atomic orbital electron populations 1.69695 1.08996 1.32254 1.33335 1.26774 0.95349 1.04011 0.90195 0.85825 0.80227 0.77151 0.80466 1.17277 1.19117 1.17376 1.19422 0.93013 0.96607 1.38579 0.90162 1.18657 0.94351 0.93080 0.91433 1.22708 0.85963 1.02525 1.02252 1.66346 1.17308 1.24174 1.13102 1.17760 0.79546 0.98789 1.03199 1.91405 1.33031 1.96186 1.91406 1.18996 0.93639 0.95790 0.97584 1.18771 1.02723 0.93193 0.90501 1.21094 0.96983 0.90258 0.99938 1.20450 1.02285 1.01389 0.92528 1.19907 0.98601 0.87124 0.92224 1.98358 1.83784 1.55215 1.64562 1.19472 1.14507 0.93386 0.97029 1.23415 0.96316 0.83797 0.99125 1.46397 1.42411 1.08735 1.13791 0.68842 1.77659 1.23622 1.20420 0.94384 1.21819 0.97599 0.90766 0.94388 1.21459 0.93452 1.04083 1.01497 0.88782 0.81900 0.84190 0.81953 0.74054 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.80 13.93 21.81 0.30 -40.49 16 2 C 0.06 2.73 5.41 85.23 0.46 3.19 16 3 Si 0.94 38.36 24.54 68.60 1.68 40.04 16 4 H -0.25 -9.51 6.70 99.48 0.67 -8.85 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.25 -10.50 6.87 99.48 0.68 -9.81 16 7 C -0.45 -23.02 9.59 23.44 0.22 -22.79 16 8 H 0.08 4.32 8.06 -2.91 -0.02 4.29 16 9 C 0.03 1.47 5.11 -21.22 -0.11 1.36 16 10 C 0.03 1.38 10.96 85.38 0.94 2.32 16 11 N -0.50 -24.75 10.33 -193.56 -2.00 -26.75 16 12 C 0.16 7.75 8.40 85.14 0.72 8.46 16 13 F -0.14 -6.73 16.75 44.97 0.75 -5.98 16 14 C -0.06 -2.60 5.40 -19.96 -0.11 -2.71 16 15 C -0.05 -1.89 5.17 -18.58 -0.10 -1.98 16 16 C -0.06 -1.98 9.67 22.47 0.22 -1.76 16 17 C -0.15 -3.76 9.59 21.92 0.21 -3.55 16 18 C 0.05 1.23 6.32 22.41 0.14 1.37 16 19 Cl -0.05 -0.86 28.86 -2.72 -0.08 -0.94 16 20 C -0.23 -6.24 6.18 -20.23 -0.13 -6.36 16 21 C 0.13 2.34 11.97 84.36 1.01 3.35 16 22 N -0.41 -8.70 7.19 -56.31 -0.40 -9.10 16 23 H 0.46 5.59 8.96 -213.39 -1.91 3.67 16 24 N -0.33 -11.80 12.68 -45.35 -0.58 -12.37 16 25 C 0.11 4.01 7.38 43.63 0.32 4.33 16 26 C -0.18 -8.52 7.01 23.15 0.16 -8.36 16 27 H 0.30 13.35 8.30 -92.71 -0.77 12.58 16 28 H 0.16 7.01 8.06 -2.91 -0.02 6.99 16 29 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 30 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.12 5.68 4.81 -2.91 -0.01 5.67 16 Total: -1.00 -67.61 305.48 2.89 -64.72 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.76 Total: 14.02 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.96 Total: -23.14 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -2.68 Total: -88.72 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.75 Total: -5.98 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.68 Total: 40.04 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -67.61 2.89 -64.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244398132.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.612 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds