Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39599 * 120.44909 * 188.82671 * 3 2 1 5 5 C 1.37691 * 120.19004 * 179.97438 * 4 3 2 6 6 C 1.39862 * 121.16321 * 359.96669 * 5 4 3 7 7 C 1.48219 * 119.53716 * 180.02562 * 6 5 4 8 8 C 1.39458 * 120.08159 * 310.00223 * 7 6 5 9 9 C 1.37934 * 119.94412 * 179.97438 * 8 7 6 10 10 Cl 1.73592 * 119.95241 * 180.02562 * 9 8 7 11 11 C 1.39011 * 120.09688 * 359.97438 * 9 8 7 12 12 O 1.35871 * 119.91810 * 179.97438 * 11 9 8 13 13 C 1.38739 * 120.16673 * 0.02562 * 11 9 8 14 14 C 1.38169 * 120.05209 * 359.74123 * 13 11 9 15 15 F 1.35101 * 120.04893 * 180.25384 * 14 13 11 16 16 C 1.38661 * 120.92428 * 0.03417 * 6 5 4 17 17 C 1.40576 * 119.72626 * 359.97438 * 16 6 5 18 18 C 1.40855 * 120.54910 * 180.02562 * 17 16 6 19 19 H 1.08001 * 119.99815 * 155.90376 * 18 17 16 20 20 C 1.40224 * 119.99878 * 335.89481 * 18 17 16 21 21 N 1.30667 * 120.00218 * 341.79898 * 20 18 17 22 22 Si 1.86803 * 119.99900 * 161.79228 * 20 18 17 23 23 H 1.48503 * 109.46931 * 60.00620 * 22 20 18 24 24 H 1.48505 * 109.47163 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47302 * 300.00810 * 22 20 18 26 26 H 1.07998 * 119.90620 * 0.24645 * 4 3 2 27 27 H 1.08002 * 119.41511 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.03128 * 359.96003 * 8 7 6 29 29 H 0.96705 * 113.99974 * 89.99970 * 12 11 9 30 30 H 1.07990 * 119.97193 * 179.97438 * 13 11 9 31 31 H 1.08001 * 120.13659 * 180.02562 * 16 6 5 32 32 H 0.97004 * 119.99953 * 185.03146 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 1.1902 0.1847 5 6 4.6518 1.1845 0.1842 6 6 5.3707 -0.0012 0.0013 7 6 6.8525 0.0343 0.0079 8 6 7.5331 0.9587 -0.7841 9 6 8.9120 0.9895 -0.7754 10 17 9.7594 2.1405 -1.7605 11 6 9.6242 0.1009 0.0219 12 8 10.9825 0.1341 0.0272 13 6 8.9515 -0.8205 0.8114 14 6 7.5702 -0.8539 0.8114 15 9 6.9151 -1.7478 1.5841 16 6 4.7166 -1.2093 -0.1862 17 6 3.3114 -1.2475 -0.1928 18 6 2.6292 -2.4654 -0.3812 19 1 1.6205 -2.5818 -0.0133 20 6 3.2596 -3.5264 -1.0468 21 7 4.3074 -3.2989 -1.7936 22 14 2.6016 -5.2653 -0.8656 23 1 1.2002 -5.3176 -1.3541 24 1 3.4392 -6.1971 -1.6629 25 1 2.6426 -5.6636 0.5643 26 1 2.7404 2.1168 0.3327 27 1 5.1861 2.1120 0.3286 28 1 6.9810 1.6497 -1.4038 29 1 11.3588 0.7261 0.6929 30 1 9.5079 -1.5096 1.4292 31 1 5.2844 -2.1174 -0.3259 32 1 4.6995 -4.0193 -2.3115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245671000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -32.159485 kcal Electronic energy + Delta-G solvation = -22532.564861 eV Core-core repulsion = 18784.000177 eV Total energy + Delta-G solvation = -3748.564684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.036 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.63337 -39.73755 -37.98608 -36.68294 -36.34731 -35.10054 -34.15927 -31.54553 -30.45730 -30.01919 -28.03346 -25.87932 -23.52199 -22.92474 -21.23254 -21.02445 -18.79147 -17.86219 -17.31483 -16.80105 -16.45507 -16.25671 -15.41505 -15.31071 -14.75257 -14.05398 -14.01070 -13.85476 -13.44580 -13.30826 -12.95634 -12.75292 -12.70626 -12.27572 -11.85675 -11.72406 -11.59521 -11.48261 -11.34618 -11.24214 -11.09489 -10.84704 -10.75311 -10.65242 -10.09359 -9.90626 -9.58986 -8.96876 -8.49401 -7.85622 -7.48073 -7.20114 -4.79015 0.85204 1.05543 2.00611 2.10421 2.60375 2.88834 2.91485 3.01575 3.36160 3.64604 3.82894 3.87404 4.05566 4.39199 4.49502 4.69903 4.90609 5.21408 5.30360 5.40366 5.53708 5.70517 5.85307 6.00026 6.04494 6.21362 6.26784 6.62990 6.64904 6.74467 6.89715 7.07323 7.36647 7.40485 7.58893 7.61504 7.76773 8.10138 8.34990 8.44546 8.77836 9.68232 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.004298 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.096825 B = 6512.428209 C = 7645.701705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.299 3.701 3 C -0.184 4.184 4 C -0.026 4.026 5 C -0.233 4.233 6 C -0.032 4.032 7 C -0.040 4.040 8 C -0.061 4.061 9 C -0.072 4.072 10 Cl -0.061 7.061 11 C 0.128 3.872 12 O -0.484 6.484 13 C -0.171 4.171 14 C 0.129 3.871 15 F -0.120 7.120 16 C -0.127 4.127 17 C 0.146 3.854 18 C -0.424 4.424 19 H 0.089 0.911 20 C 0.076 3.924 21 N -0.761 5.761 22 Si 0.916 3.084 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.256 1.256 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.149 0.851 29 H 0.391 0.609 30 H 0.147 0.853 31 H 0.131 0.869 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.639 4.203 2.579 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.010 4.010 3 C -0.191 4.191 4 C -0.047 4.047 5 C -0.253 4.253 6 C -0.033 4.033 7 C -0.042 4.042 8 C -0.080 4.080 9 C -0.099 4.099 10 Cl -0.032 7.032 11 C 0.082 3.918 12 O -0.294 6.294 13 C -0.191 4.191 14 C 0.109 3.891 15 F -0.099 7.099 16 C -0.146 4.146 17 C 0.141 3.859 18 C -0.451 4.451 19 H 0.107 0.893 20 C -0.148 4.148 21 N -0.382 5.382 22 Si 0.739 3.261 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.180 1.180 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.167 0.833 29 H 0.247 0.753 30 H 0.165 0.835 31 H 0.148 0.852 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.097 3.737 1.935 12.808 hybrid contribution 0.335 -0.530 0.316 0.702 sum 12.433 3.207 2.252 13.036 Atomic orbital electron populations 1.81027 1.12735 1.10003 1.15028 1.25783 0.92716 0.91346 0.91167 1.16961 0.83272 0.94445 1.24381 1.20352 0.93463 0.94973 0.95918 1.20022 0.93062 0.95865 1.16315 1.18251 0.88027 0.94954 1.02084 1.19128 0.94857 0.94613 0.95559 1.20966 0.90917 0.98169 0.97944 1.21228 0.92744 0.95946 1.00026 1.98356 1.77721 1.58273 1.68831 1.17709 0.83232 0.94662 0.96210 1.84848 1.15197 1.68588 1.60773 1.21152 0.92663 1.02424 1.02854 1.17569 0.89190 0.89870 0.92472 1.91565 1.81112 1.64992 1.72188 1.21390 0.93833 0.95942 1.03448 1.18307 0.91024 0.89935 0.86639 1.19788 1.01055 0.95172 1.29131 0.89347 1.26142 0.93500 1.02213 0.92956 1.69666 1.16543 1.35962 1.16061 0.86181 0.80145 0.79454 0.80290 1.18433 1.19679 1.18042 0.88008 0.88192 0.83314 0.75285 0.83519 0.85159 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.11 18.54 41.84 0.78 -11.34 16 2 C 0.30 6.92 14.28 -22.47 -0.32 6.60 16 3 C -0.18 -4.14 5.95 -104.11 -0.62 -4.76 16 4 C -0.03 -0.52 9.74 -39.27 -0.38 -0.90 16 5 C -0.23 -4.34 9.41 -39.17 -0.37 -4.71 16 6 C -0.03 -0.63 5.31 -105.03 -0.56 -1.19 16 7 C -0.04 -0.68 5.45 -104.82 -0.57 -1.25 16 8 C -0.06 -0.90 9.23 -39.24 -0.36 -1.26 16 9 C -0.07 -0.96 6.33 -39.41 -0.25 -1.21 16 10 Cl -0.06 -0.72 28.49 -51.86 -1.48 -2.20 16 11 C 0.13 1.60 6.70 -39.11 -0.26 1.34 16 12 O -0.48 -5.06 12.94 -19.34 -0.25 -5.31 16 13 C -0.17 -2.26 9.95 -39.42 -0.39 -2.65 16 14 C 0.13 2.07 7.13 -39.09 -0.28 1.79 16 15 F -0.12 -2.14 15.86 2.25 0.04 -2.10 16 16 C -0.13 -2.85 7.48 -38.54 -0.29 -3.14 16 17 C 0.15 3.48 5.74 -104.68 -0.60 2.88 16 18 C -0.42 -10.22 8.58 -37.85 -0.32 -10.55 16 19 H 0.09 2.15 7.37 -52.49 -0.39 1.76 16 20 C 0.08 1.70 5.14 -17.30 -0.09 1.61 16 21 N -0.76 -17.27 10.96 55.56 0.61 -16.66 16 22 Si 0.92 17.10 29.60 -169.99 -5.03 12.07 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 25 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 26 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.10 1.60 8.00 -52.49 -0.42 1.18 16 28 H 0.15 2.04 8.03 -52.49 -0.42 1.61 16 29 H 0.39 2.19 9.06 45.56 0.41 2.60 16 30 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.13 3.05 5.85 -52.49 -0.31 2.74 16 32 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -26.08 316.83 -7.33 -33.42 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -1.10 Total: 4.73 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -5.67 Total: -17.39 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: 1.38 Total: -28.00 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.25 Total: -5.31 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.08 -7.33 -33.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245671000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.258 kcal (2) G-P(sol) polarization free energy of solvation -26.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds