Wall clock time and date at job start Tue Mar 31 2020 11:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39599 * 120.44909 * 188.82671 * 3 2 1 5 5 C 1.37691 * 120.19004 * 179.97438 * 4 3 2 6 6 C 1.39862 * 121.16321 * 359.96669 * 5 4 3 7 7 C 1.48219 * 119.53716 * 180.02562 * 6 5 4 8 8 C 1.39458 * 120.08159 * 310.00223 * 7 6 5 9 9 C 1.37934 * 119.94412 * 179.97438 * 8 7 6 10 10 Cl 1.73592 * 119.95241 * 180.02562 * 9 8 7 11 11 C 1.39011 * 120.09688 * 359.97438 * 9 8 7 12 12 O 1.35871 * 119.91810 * 179.97438 * 11 9 8 13 13 C 1.38739 * 120.16673 * 0.02562 * 11 9 8 14 14 C 1.38169 * 120.05209 * 359.74123 * 13 11 9 15 15 F 1.35101 * 120.04893 * 180.25384 * 14 13 11 16 16 C 1.38661 * 120.92428 * 0.03417 * 6 5 4 17 17 C 1.40576 * 119.72626 * 359.97438 * 16 6 5 18 18 C 1.40855 * 120.54910 * 180.02562 * 17 16 6 19 19 H 1.08001 * 119.99815 * 155.90376 * 18 17 16 20 20 C 1.40224 * 119.99878 * 335.89481 * 18 17 16 21 21 N 1.30667 * 120.00218 * 341.79898 * 20 18 17 22 22 Si 1.86803 * 119.99900 * 161.79228 * 20 18 17 23 23 H 1.48503 * 109.46931 * 60.00620 * 22 20 18 24 24 H 1.48505 * 109.47163 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47302 * 300.00810 * 22 20 18 26 26 H 1.07998 * 119.90620 * 0.24645 * 4 3 2 27 27 H 1.08002 * 119.41511 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.03128 * 359.96003 * 8 7 6 29 29 H 0.96705 * 113.99974 * 89.99970 * 12 11 9 30 30 H 1.07990 * 119.97193 * 179.97438 * 13 11 9 31 31 H 1.08001 * 120.13659 * 180.02562 * 16 6 5 32 32 H 0.97004 * 119.99953 * 185.03146 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 1.1902 0.1847 5 6 4.6518 1.1845 0.1842 6 6 5.3707 -0.0012 0.0013 7 6 6.8525 0.0343 0.0079 8 6 7.5331 0.9587 -0.7841 9 6 8.9120 0.9895 -0.7754 10 17 9.7594 2.1405 -1.7605 11 6 9.6242 0.1009 0.0219 12 8 10.9825 0.1341 0.0272 13 6 8.9515 -0.8205 0.8114 14 6 7.5702 -0.8539 0.8114 15 9 6.9151 -1.7478 1.5841 16 6 4.7166 -1.2093 -0.1862 17 6 3.3114 -1.2475 -0.1928 18 6 2.6292 -2.4654 -0.3812 19 1 1.6205 -2.5818 -0.0133 20 6 3.2596 -3.5264 -1.0468 21 7 4.3074 -3.2989 -1.7936 22 14 2.6016 -5.2653 -0.8656 23 1 1.2002 -5.3176 -1.3541 24 1 3.4392 -6.1971 -1.6629 25 1 2.6426 -5.6636 0.5643 26 1 2.7404 2.1168 0.3327 27 1 5.1861 2.1120 0.3286 28 1 6.9810 1.6497 -1.4038 29 1 11.3588 0.7261 0.6929 30 1 9.5079 -1.5096 1.4292 31 1 5.2844 -2.1174 -0.3259 32 1 4.6995 -4.0193 -2.3115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245671000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:15 Heat of formation + Delta-G solvation = -44.901150 kcal Electronic energy + Delta-G solvation = -22533.117381 eV Core-core repulsion = 18784.000177 eV Total energy + Delta-G solvation = -3749.117204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.036 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.92014 -40.82763 -39.48496 -37.77775 -37.44834 -36.83322 -35.78141 -32.94969 -31.74502 -31.51680 -29.37596 -27.56779 -24.83816 -24.12780 -22.77150 -22.45573 -19.78661 -19.52044 -18.92547 -17.97293 -17.74723 -17.44046 -16.80611 -16.66437 -15.90604 -15.68022 -15.23721 -15.11262 -14.85382 -14.66824 -14.56618 -14.38164 -13.84963 -13.71960 -13.48325 -13.42146 -13.13372 -12.99010 -12.82521 -12.48426 -12.31234 -12.17443 -12.09704 -11.83204 -11.59682 -11.50072 -11.22043 -10.13864 -9.69923 -9.52166 -9.00224 -8.83923 -6.55027 -0.34219 -0.05133 0.46050 1.00154 1.05199 1.34147 1.44381 1.50534 2.03615 2.10386 2.15536 2.44370 2.64709 2.84828 3.37152 3.54406 3.58970 3.67321 3.72973 4.14107 4.39116 4.49813 4.60569 4.70334 4.82442 4.93188 4.95364 5.02593 5.14713 5.23600 5.40211 5.54507 5.75359 5.91391 6.00468 6.11329 6.39832 6.63242 6.70871 6.75079 6.96642 8.05302 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.004298 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.096825 B = 6512.428209 C = 7645.701705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.305 3.695 3 C -0.206 4.206 4 C -0.024 4.024 5 C -0.221 4.221 6 C -0.021 4.021 7 C -0.070 4.070 8 C -0.055 4.055 9 C -0.075 4.075 10 Cl -0.045 7.045 11 C 0.150 3.850 12 O -0.485 6.485 13 C -0.164 4.164 14 C 0.113 3.887 15 F -0.138 7.138 16 C -0.153 4.153 17 C 0.126 3.874 18 C -0.463 4.463 19 H 0.072 0.928 20 C 0.046 3.954 21 N -0.784 5.784 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.256 1.256 25 H -0.257 1.257 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.157 0.843 29 H 0.417 0.583 30 H 0.170 0.830 31 H 0.114 0.886 32 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.237 5.306 2.641 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C -0.003 4.003 3 C -0.212 4.212 4 C -0.044 4.044 5 C -0.240 4.240 6 C -0.022 4.022 7 C -0.071 4.071 8 C -0.074 4.074 9 C -0.102 4.102 10 Cl -0.016 7.016 11 C 0.103 3.897 12 O -0.299 6.299 13 C -0.183 4.183 14 C 0.093 3.907 15 F -0.116 7.116 16 C -0.172 4.172 17 C 0.121 3.879 18 C -0.491 4.491 19 H 0.090 0.910 20 C -0.176 4.176 21 N -0.407 5.407 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.179 1.179 25 H -0.181 1.181 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.175 0.825 29 H 0.277 0.723 30 H 0.188 0.812 31 H 0.132 0.868 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.723 4.872 2.008 15.637 hybrid contribution -0.215 -0.675 0.308 0.773 sum 14.508 4.197 2.316 15.279 Atomic orbital electron populations 1.81001 1.13202 1.10693 1.16094 1.25998 0.92937 0.90761 0.90639 1.17215 0.82990 0.95314 1.25721 1.20701 0.94051 0.95017 0.94662 1.20460 0.92845 0.96854 1.13889 1.18546 0.90047 0.94276 0.99351 1.19011 0.93356 0.96770 0.97945 1.20976 0.91625 0.97493 0.97296 1.21278 0.92430 0.96357 1.00173 1.98367 1.77195 1.57621 1.68383 1.17694 0.84112 0.93280 0.94585 1.84795 1.13670 1.69480 1.61931 1.21323 0.91414 1.02712 1.02887 1.17819 0.90326 0.89725 0.92809 1.91521 1.81680 1.65671 1.72740 1.21253 0.93286 0.96668 1.05977 1.18600 0.91965 0.90407 0.86915 1.19851 1.00928 0.96812 1.31478 0.91002 1.26755 0.93685 1.04924 0.92194 1.69685 1.17339 1.37127 1.16533 0.85333 0.79342 0.75621 0.80214 1.18974 1.17909 1.18091 0.85135 0.84681 0.82511 0.72256 0.81237 0.86788 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.77 18.54 19.00 0.35 -25.42 16 2 C 0.31 14.44 14.28 88.33 1.26 15.70 16 3 C -0.21 -9.42 5.95 -19.54 -0.12 -9.53 16 4 C -0.02 -0.91 9.74 22.47 0.22 -0.69 16 5 C -0.22 -7.86 9.41 22.53 0.21 -7.65 16 6 C -0.02 -0.82 5.31 -20.13 -0.11 -0.93 16 7 C -0.07 -2.28 5.45 -19.99 -0.11 -2.38 16 8 C -0.06 -1.49 9.23 22.49 0.21 -1.28 16 9 C -0.07 -1.76 6.33 22.38 0.14 -1.62 16 10 Cl -0.04 -0.92 28.49 -2.72 -0.08 -1.00 16 11 C 0.15 3.25 6.70 22.58 0.15 3.40 16 12 O -0.48 -8.11 12.94 -92.10 -1.19 -9.31 16 13 C -0.16 -3.91 9.95 22.37 0.22 -3.69 16 14 C 0.11 3.52 7.13 22.59 0.16 3.68 16 15 F -0.14 -4.95 15.86 44.97 0.71 -4.23 16 16 C -0.15 -7.06 7.48 22.94 0.17 -6.88 16 17 C 0.13 6.24 5.74 -19.90 -0.11 6.13 16 18 C -0.46 -23.50 8.58 23.39 0.20 -23.30 16 19 H 0.07 3.73 7.37 -2.91 -0.02 3.71 16 20 C 0.05 2.12 5.14 85.35 0.44 2.56 16 21 N -0.78 -36.78 10.96 21.87 0.24 -36.54 16 22 Si 0.97 35.96 29.60 68.60 2.03 37.99 16 23 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 25 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 26 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 27 H 0.14 3.85 8.00 -2.91 -0.02 3.82 16 28 H 0.16 3.89 8.03 -2.91 -0.02 3.87 16 29 H 0.42 2.73 9.06 -74.05 -0.67 2.06 16 30 H 0.17 3.20 8.06 -2.92 -0.02 3.18 16 31 H 0.11 5.59 5.85 -2.91 -0.02 5.57 16 32 H 0.30 12.62 8.30 -92.71 -0.77 11.85 16 Total: -1.00 -58.11 316.83 5.56 -52.56 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.55 Total: 12.42 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 2.94 Total: -26.48 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.59 Total: -61.95 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.19 Total: -9.31 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.71 Total: -4.23 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -58.11 5.56 -52.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245671000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.655 kcal (2) G-P(sol) polarization free energy of solvation -58.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds