Wall clock time and date at job start Tue Mar 31 2020 11:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37093 * 120.00529 * 2 1 4 4 H 1.08005 * 120.00324 * 142.82957 * 3 2 1 5 5 C 1.38955 * 120.00060 * 322.82934 * 3 2 1 6 6 N 1.31407 * 120.00263 * 158.40427 * 5 3 2 7 7 Si 1.86804 * 119.99549 * 338.40654 * 5 3 2 8 8 H 1.48506 * 109.46917 * 95.72266 * 7 5 3 9 9 H 1.48504 * 109.46808 * 215.71944 * 7 5 3 10 10 H 1.48499 * 109.47481 * 335.71921 * 7 5 3 11 11 C 1.34774 * 119.99598 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99935 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00343 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.47679 * 179.97438 * 13 11 2 15 15 O 1.42898 * 109.47265 * 179.97438 * 14 13 11 16 16 C 1.35929 * 116.99632 * 179.97438 * 15 14 13 17 17 C 1.38692 * 120.05381 * 359.73259 * 16 15 14 18 18 C 1.38257 * 119.94257 * 179.76705 * 17 16 15 19 19 Cl 1.73607 * 119.97636 * 180.24957 * 18 17 16 20 20 C 1.38395 * 120.05012 * 0.49962 * 18 17 16 21 21 C 1.38226 * 120.10807 * 359.75116 * 20 18 17 22 22 C 1.38257 * 120.05382 * 359.97438 * 21 20 18 23 23 Cl 1.73606 * 120.02707 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46915 * 265.13798 * 1 2 3 25 25 H 1.09003 * 109.46605 * 25.13042 * 1 2 3 26 26 H 1.08994 * 109.47767 * 145.13265 * 1 2 3 27 27 H 0.97004 * 120.00119 * 180.02562 * 6 5 3 28 28 H 1.09007 * 109.47409 * 60.00187 * 13 11 2 29 29 H 1.08996 * 109.47322 * 300.00261 * 13 11 2 30 30 H 1.08996 * 109.47065 * 300.00551 * 14 13 11 31 31 H 1.09007 * 109.46440 * 59.99725 * 14 13 11 32 32 H 1.08000 * 120.02604 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.94423 * 179.72232 * 20 18 17 34 34 H 1.08005 * 119.97596 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.0661 1.2822 0.5651 5 6 1.6676 2.2684 -0.7271 6 7 2.0434 3.4889 -0.4175 7 14 0.4841 1.9867 -2.1446 8 1 -0.9112 2.1587 -1.6661 9 1 0.7618 2.9683 -3.2238 10 1 0.6607 0.6094 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3794 -3.6353 -0.0018 15 8 1.6648 -4.8728 -0.0012 16 6 2.4051 -6.0128 -0.0028 17 6 3.7902 -5.9416 -0.0104 18 6 4.5410 -7.1025 -0.0071 19 17 6.2748 -7.0143 -0.0101 20 6 3.9113 -8.3350 -0.0066 21 6 2.5310 -8.4085 -0.0042 22 6 1.7760 -7.2503 -0.0018 23 17 0.0424 -7.3434 0.0005 24 1 -0.3633 -0.0871 1.0240 25 1 -0.3632 0.9304 -0.4365 26 1 -0.3634 -0.8431 -0.5874 27 1 1.7060 4.2437 -0.9248 28 1 0.7583 -2.5299 -0.8903 29 1 0.7590 -2.5302 0.8896 30 1 3.0054 -3.5772 -0.8922 31 1 3.0068 -3.5779 0.8878 32 1 4.2818 -4.9800 -0.0156 33 1 4.4995 -9.2408 -0.0085 34 1 2.0419 -9.3714 -0.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318169216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:36 Heat of formation + Delta-G solvation = -48.312827 kcal Electronic energy + Delta-G solvation = -21134.986254 eV Core-core repulsion = 17506.748564 eV Total energy + Delta-G solvation = -3628.237690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50431 -38.90365 -37.89523 -36.92140 -36.30523 -34.95686 -32.32743 -31.68510 -31.04041 -29.76589 -26.56791 -25.76131 -23.92615 -22.85868 -22.02074 -19.06202 -18.50004 -17.15494 -16.85115 -16.53697 -16.38793 -15.91080 -15.62437 -15.18847 -14.70974 -14.39198 -13.90309 -13.77509 -13.55696 -12.89031 -12.71549 -12.59818 -12.55361 -12.38524 -12.20612 -11.82405 -11.78739 -11.28223 -11.20275 -11.13399 -11.03360 -10.84903 -10.64592 -10.41566 -9.98630 -9.18006 -9.15910 -8.66309 -8.47314 -7.83702 -6.46238 -4.04254 0.60607 0.90069 1.70726 1.96792 2.84897 2.98183 3.12936 3.17308 3.21449 3.60329 4.08398 4.31437 4.43236 4.63303 4.66342 4.89846 4.98279 5.00277 5.13357 5.23243 5.40422 5.49967 5.62779 5.68950 5.75600 5.81125 5.90395 5.94962 6.11951 6.13865 6.23941 7.05793 7.45671 8.19551 8.40434 8.86779 9.23185 9.64719 10.65527 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.003158 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.204440 B = 8864.567244 C =10182.893675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.465 5.465 3 C -0.320 4.320 4 H 0.107 0.893 5 C 0.060 3.940 6 N -0.861 5.861 7 Si 0.881 3.119 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.264 1.264 11 C 0.465 3.535 12 O -0.569 6.569 13 C -0.134 4.134 14 C 0.074 3.926 15 O -0.301 6.301 16 C 0.164 3.836 17 C -0.192 4.192 18 C 0.010 3.990 19 Cl -0.058 7.058 20 C -0.144 4.144 21 C -0.062 4.062 22 C -0.072 4.072 23 Cl -0.051 7.051 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.275 0.725 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.142 0.858 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 -23.658 0.245 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.186 5.186 3 C -0.447 4.447 4 H 0.124 0.876 5 C -0.146 4.146 6 N -0.497 5.497 7 Si 0.708 3.292 8 H -0.202 1.202 9 H -0.213 1.213 10 H -0.189 1.189 11 C 0.253 3.747 12 O -0.452 6.452 13 C -0.175 4.175 14 C -0.001 4.001 15 O -0.213 6.213 16 C 0.116 3.884 17 C -0.211 4.211 18 C -0.017 4.017 19 Cl -0.029 7.029 20 C -0.163 4.163 21 C -0.081 4.081 22 C -0.100 4.100 23 Cl -0.022 7.022 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.706 -23.358 0.214 23.421 hybrid contribution -0.555 0.233 -0.787 0.991 sum -2.261 -23.125 -0.573 23.243 Atomic orbital electron populations 1.22052 0.83179 1.01777 1.01260 1.43632 1.04179 1.05583 1.65222 1.19067 1.10323 0.85311 1.29997 0.87574 1.25377 0.97445 0.94744 0.97071 1.69749 1.43641 0.98121 1.38206 0.86912 0.80203 0.79070 0.82980 1.20172 1.21342 1.18882 1.19865 0.87989 0.84368 0.82481 1.90573 1.13725 1.87009 1.53856 1.21488 0.98994 0.92262 1.04729 1.22673 0.94661 0.79468 1.03319 1.86119 1.35359 1.12644 1.87194 1.18501 0.89127 0.86340 0.94454 1.21264 0.92049 0.99784 1.08019 1.20740 0.85238 0.94375 1.01349 1.98399 1.09168 1.98721 1.96593 1.20878 0.93886 0.96670 1.04862 1.20821 0.92678 0.97065 0.97499 1.20272 0.86083 0.92075 1.11554 1.98378 1.08288 1.98517 1.96992 0.92715 0.91512 0.92491 0.91467 0.88892 0.88886 0.90635 0.90623 0.82856 0.83971 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 8.78 59.85 0.53 1.68 16 2 N -0.46 -10.98 2.59 -122.19 -0.32 -11.29 16 3 C -0.32 -8.95 9.37 -14.93 -0.14 -9.09 16 4 H 0.11 3.34 7.90 -52.48 -0.41 2.92 16 5 C 0.06 1.63 5.29 -17.47 -0.09 1.54 16 6 N -0.86 -24.63 13.96 55.50 0.77 -23.85 16 7 Si 0.88 20.18 24.96 -169.99 -4.24 15.93 16 8 H -0.27 -5.82 6.69 56.52 0.38 -5.44 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.46 10.31 7.63 -10.99 -0.08 10.22 16 12 O -0.57 -14.62 15.85 5.55 0.09 -14.53 16 13 C -0.13 -2.17 4.69 -27.88 -0.13 -2.30 16 14 C 0.07 1.10 4.03 37.16 0.15 1.25 16 15 O -0.30 -4.18 9.60 -19.52 -0.19 -4.37 16 16 C 0.16 2.07 6.68 -39.20 -0.26 1.81 16 17 C -0.19 -2.29 8.82 -39.41 -0.35 -2.64 16 18 C 0.01 0.11 6.32 -39.52 -0.25 -0.14 16 19 Cl -0.06 -0.59 28.95 -51.86 -1.50 -2.09 16 20 C -0.14 -1.24 9.83 -39.53 -0.39 -1.63 16 21 C -0.06 -0.53 9.82 -39.58 -0.39 -0.92 16 22 C -0.07 -0.80 6.33 -39.36 -0.25 -1.05 16 23 Cl -0.05 -0.55 28.50 -51.86 -1.48 -2.03 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.35 3.42 -51.93 -0.18 1.17 16 26 H 0.06 0.89 6.64 -51.93 -0.34 0.54 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.09 1.37 7.41 -51.93 -0.38 0.98 16 29 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 30 H 0.08 1.15 7.61 -51.93 -0.39 0.76 16 31 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 32 H 0.15 1.89 6.30 -52.49 -0.33 1.56 16 33 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -31.07 320.49 -6.98 -38.05 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.29 Total: 0.65 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.66 Total: -1.29 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.46 Total: -35.15 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.10 Total: -18.90 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.24 Total: 15.93 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -2.98 Total: -4.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.07 -6.98 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318169216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.264 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds