Wall clock time and date at job start Tue Mar 31 2020 11:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37093 * 120.00529 * 2 1 4 4 H 1.08005 * 120.00324 * 142.82957 * 3 2 1 5 5 C 1.38955 * 120.00060 * 322.82934 * 3 2 1 6 6 N 1.31407 * 120.00263 * 158.40427 * 5 3 2 7 7 Si 1.86804 * 119.99549 * 338.40654 * 5 3 2 8 8 H 1.48506 * 109.46917 * 95.72266 * 7 5 3 9 9 H 1.48504 * 109.46808 * 215.71944 * 7 5 3 10 10 H 1.48499 * 109.47481 * 335.71921 * 7 5 3 11 11 C 1.34774 * 119.99598 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99935 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00343 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.47679 * 179.97438 * 13 11 2 15 15 O 1.42898 * 109.47265 * 179.97438 * 14 13 11 16 16 C 1.35929 * 116.99632 * 179.97438 * 15 14 13 17 17 C 1.38692 * 120.05381 * 359.73259 * 16 15 14 18 18 C 1.38257 * 119.94257 * 179.76705 * 17 16 15 19 19 Cl 1.73607 * 119.97636 * 180.24957 * 18 17 16 20 20 C 1.38395 * 120.05012 * 0.49962 * 18 17 16 21 21 C 1.38226 * 120.10807 * 359.75116 * 20 18 17 22 22 C 1.38257 * 120.05382 * 359.97438 * 21 20 18 23 23 Cl 1.73606 * 120.02707 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46915 * 265.13798 * 1 2 3 25 25 H 1.09003 * 109.46605 * 25.13042 * 1 2 3 26 26 H 1.08994 * 109.47767 * 145.13265 * 1 2 3 27 27 H 0.97004 * 120.00119 * 180.02562 * 6 5 3 28 28 H 1.09007 * 109.47409 * 60.00187 * 13 11 2 29 29 H 1.08996 * 109.47322 * 300.00261 * 13 11 2 30 30 H 1.08996 * 109.47065 * 300.00551 * 14 13 11 31 31 H 1.09007 * 109.46440 * 59.99725 * 14 13 11 32 32 H 1.08000 * 120.02604 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.94423 * 179.72232 * 20 18 17 34 34 H 1.08005 * 119.97596 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.0661 1.2822 0.5651 5 6 1.6676 2.2684 -0.7271 6 7 2.0434 3.4889 -0.4175 7 14 0.4841 1.9867 -2.1446 8 1 -0.9112 2.1587 -1.6661 9 1 0.7618 2.9683 -3.2238 10 1 0.6607 0.6094 -2.6708 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3794 -3.6353 -0.0018 15 8 1.6648 -4.8728 -0.0012 16 6 2.4051 -6.0128 -0.0028 17 6 3.7902 -5.9416 -0.0104 18 6 4.5410 -7.1025 -0.0071 19 17 6.2748 -7.0143 -0.0101 20 6 3.9113 -8.3350 -0.0066 21 6 2.5310 -8.4085 -0.0042 22 6 1.7760 -7.2503 -0.0018 23 17 0.0424 -7.3434 0.0005 24 1 -0.3633 -0.0871 1.0240 25 1 -0.3632 0.9304 -0.4365 26 1 -0.3634 -0.8431 -0.5874 27 1 1.7060 4.2437 -0.9248 28 1 0.7583 -2.5299 -0.8903 29 1 0.7590 -2.5302 0.8896 30 1 3.0054 -3.5772 -0.8922 31 1 3.0068 -3.5779 0.8878 32 1 4.2818 -4.9800 -0.0156 33 1 4.4995 -9.2408 -0.0085 34 1 2.0419 -9.3714 -0.0042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318169216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:36 Heat of formation + Delta-G solvation = -67.656746 kcal Electronic energy + Delta-G solvation = -21135.825069 eV Core-core repulsion = 17506.748564 eV Total energy + Delta-G solvation = -3629.076505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45568 -40.56215 -38.87321 -37.74496 -37.12650 -36.80715 -34.24208 -33.07717 -31.84550 -30.71653 -28.24425 -27.35729 -25.28293 -23.71351 -23.09339 -20.59986 -19.66125 -19.07474 -18.06324 -17.62744 -17.41378 -17.34934 -17.02704 -16.26506 -16.15809 -15.51802 -15.12343 -14.95872 -14.79426 -14.53158 -14.20036 -14.07404 -13.58614 -13.47603 -13.33348 -13.19441 -13.13090 -12.66907 -12.41420 -12.18266 -12.07512 -12.06206 -11.87489 -11.83105 -11.67571 -11.09123 -10.49662 -9.99665 -9.75325 -9.33670 -8.54231 -6.18176 -0.20506 0.09587 0.89897 1.14516 1.19879 1.32637 1.45293 1.76759 1.87195 2.16368 2.32862 2.78873 2.96194 3.54460 3.65757 3.83478 3.90425 3.92652 3.98202 4.20456 4.29080 4.43172 4.46314 4.57415 4.67800 4.73410 4.78761 4.83226 4.94827 5.04019 5.37292 5.49068 6.00278 6.03625 6.49592 6.88772 7.24593 7.78894 8.62889 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.003158 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.204440 B = 8864.567244 C =10182.893675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.480 5.480 3 C -0.341 4.341 4 H 0.045 0.955 5 C 0.011 3.989 6 N -0.910 5.910 7 Si 0.955 3.045 8 H -0.238 1.238 9 H -0.291 1.291 10 H -0.256 1.256 11 C 0.460 3.540 12 O -0.617 6.617 13 C -0.120 4.120 14 C 0.083 3.917 15 O -0.303 6.303 16 C 0.140 3.860 17 C -0.204 4.204 18 C 0.001 3.999 19 Cl -0.059 7.059 20 C -0.130 4.130 21 C -0.051 4.051 22 C -0.079 4.079 23 Cl -0.050 7.050 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.281 0.719 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.140 0.860 33 H 0.173 0.827 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -26.774 -0.762 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.201 5.201 3 C -0.469 4.469 4 H 0.063 0.937 5 C -0.191 4.191 6 N -0.547 5.547 7 Si 0.778 3.222 8 H -0.163 1.163 9 H -0.218 1.218 10 H -0.180 1.180 11 C 0.250 3.750 12 O -0.502 6.502 13 C -0.159 4.159 14 C 0.008 3.992 15 O -0.216 6.216 16 C 0.093 3.907 17 C -0.224 4.224 18 C -0.026 4.026 19 Cl -0.030 7.030 20 C -0.149 4.149 21 C -0.069 4.069 22 C -0.106 4.106 23 Cl -0.021 7.021 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.190 0.810 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.309 -26.496 -0.772 26.855 hybrid contribution 0.370 1.094 -0.384 1.217 sum -3.939 -25.402 -1.155 25.731 Atomic orbital electron populations 1.22314 0.79835 1.02997 1.03688 1.43770 1.06237 1.04469 1.65665 1.18680 1.09559 0.87989 1.30652 0.93748 1.26215 0.99856 0.93792 0.99285 1.69869 1.45922 0.99317 1.39639 0.85750 0.79281 0.79006 0.78160 1.16251 1.21818 1.17955 1.20882 0.87796 0.86036 0.80291 1.90546 1.16304 1.88025 1.55330 1.21351 0.98685 0.88666 1.07220 1.22383 0.94170 0.80131 1.02510 1.86058 1.35193 1.12472 1.87921 1.18689 0.89370 0.86356 0.96286 1.21212 0.92201 0.99925 1.09043 1.20898 0.85229 0.94782 1.01730 1.98399 1.09248 1.98756 1.96609 1.21252 0.94166 0.96849 1.02619 1.21222 0.92530 0.97600 0.95549 1.20495 0.86348 0.92152 1.11614 1.98378 1.08252 1.98488 1.97002 0.90337 0.92565 0.88209 0.90923 0.86244 0.86116 0.91659 0.91613 0.84235 0.81000 0.80166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.86 8.78 127.77 1.12 2.98 16 2 N -0.48 -22.57 2.59 -658.90 -1.70 -24.28 16 3 C -0.34 -19.92 9.37 84.04 0.79 -19.13 16 4 H 0.04 3.05 7.90 -2.91 -0.02 3.03 16 5 C 0.01 0.61 5.29 84.93 0.45 1.06 16 6 N -0.91 -53.94 13.96 21.66 0.30 -53.64 16 7 Si 0.96 40.97 24.96 68.60 1.71 42.68 16 8 H -0.24 -8.79 6.69 99.48 0.67 -8.13 16 9 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 11 C 0.46 20.43 7.63 87.66 0.67 21.10 16 12 O -0.62 -33.11 15.85 -3.07 -0.05 -33.16 16 13 C -0.12 -3.60 4.69 29.85 0.14 -3.46 16 14 C 0.08 2.45 4.03 71.98 0.29 2.74 16 15 O -0.30 -8.03 9.60 -92.75 -0.89 -8.92 16 16 C 0.14 3.38 6.68 22.52 0.15 3.53 16 17 C -0.20 -4.83 8.82 22.38 0.20 -4.63 16 18 C 0.00 0.01 6.32 22.31 0.14 0.15 16 19 Cl -0.06 -1.16 28.95 -2.72 -0.08 -1.24 16 20 C -0.13 -1.84 9.83 22.30 0.22 -1.63 16 21 C -0.05 -0.70 9.82 22.27 0.22 -0.48 16 22 C -0.08 -1.56 6.33 22.41 0.14 -1.42 16 23 Cl -0.05 -0.97 28.50 -2.72 -0.08 -1.05 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 25 H 0.06 2.08 3.42 -2.39 -0.01 2.07 16 26 H 0.10 2.60 6.64 -2.39 -0.02 2.58 16 27 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.12 3.04 7.41 -2.38 -0.02 3.02 16 29 H 0.12 3.03 8.11 -2.39 -0.02 3.01 16 30 H 0.07 2.03 7.61 -2.39 -0.02 2.01 16 31 H 0.07 2.03 7.63 -2.38 -0.02 2.01 16 32 H 0.14 3.61 6.30 -2.91 -0.02 3.59 16 33 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -72.74 320.49 4.85 -67.89 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.10 Total: 10.92 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.53 Total: 0.81 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.40 Total: -77.92 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.94 Total: -42.08 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.71 Total: 42.68 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.16 Total: -2.29 kcal Total: -72.74 4.85 -67.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318169216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.232 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds