Wall clock time and date at job start Tue Mar 31 2020 11:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00336 * 3 2 1 5 5 H 1.48491 * 109.46838 * 30.00606 * 3 2 1 6 6 H 1.48505 * 109.46880 * 150.00618 * 3 2 1 7 7 C 1.37880 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00040 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00271 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99854 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46912 * 179.97438 * 13 11 10 15 15 O 1.42903 * 109.46726 * 179.97438 * 14 13 11 16 16 C 1.35925 * 116.99722 * 180.02562 * 15 14 13 17 17 C 1.38692 * 120.05493 * 359.72114 * 16 15 14 18 18 C 1.38264 * 119.94575 * 179.77029 * 17 16 15 19 19 Cl 1.73600 * 119.97291 * 180.25687 * 18 17 16 20 20 C 1.38393 * 120.04918 * 0.50823 * 18 17 16 21 21 C 1.38229 * 120.10535 * 359.74784 * 20 18 17 22 22 C 1.38264 * 120.05613 * 359.97438 * 21 20 18 23 23 Cl 1.73597 * 120.02560 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47629 * 59.99453 * 9 7 2 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 0.97005 * 120.00266 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.46980 * 59.99654 * 13 11 10 29 29 H 1.08992 * 109.47158 * 299.99760 * 13 11 10 30 30 H 1.09002 * 109.47398 * 300.00078 * 14 13 11 31 31 H 1.09001 * 109.47194 * 60.00258 * 14 13 11 32 32 H 1.08005 * 120.02764 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.94611 * 179.72093 * 20 18 17 34 34 H 1.07998 * 119.97278 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3248 -2.8216 -0.0009 12 8 6.1130 -1.8998 -0.0014 13 6 5.8271 -4.2425 -0.0002 14 6 7.3571 -4.2425 -0.0009 15 8 7.8334 -5.5898 0.0003 16 6 9.1810 -5.7679 0.0004 17 6 10.0269 -4.6688 -0.0065 18 6 11.3972 -4.8526 -0.0016 19 17 12.4567 -3.4774 -0.0035 20 6 11.9249 -6.1320 -0.0004 21 6 11.0837 -7.2289 0.0012 22 6 9.7127 -7.0502 0.0021 23 17 8.6571 -8.4283 0.0034 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8887 26 1 3.8744 -0.6801 -0.8912 27 1 3.3694 -3.3126 -0.0002 28 1 5.4637 -4.7568 -0.8899 29 1 5.4639 -4.7558 0.8900 30 1 7.7201 -3.7292 -0.8914 31 1 7.7209 -3.7281 0.8886 32 1 9.6155 -3.6702 -0.0116 33 1 12.9955 -6.2736 -0.0011 34 1 11.4978 -8.2263 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321376118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:27 Heat of formation + Delta-G solvation = -72.526868 kcal Electronic energy + Delta-G solvation = -20475.391099 eV Core-core repulsion = 16846.103410 eV Total energy + Delta-G solvation = -3629.287690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66859 -39.19699 -38.06026 -37.03465 -36.41814 -34.45701 -32.55450 -32.13145 -31.16549 -30.00493 -28.03801 -24.99138 -23.06752 -22.67127 -21.63086 -19.95629 -18.95933 -17.30451 -16.84990 -16.67598 -16.61942 -15.96014 -15.42296 -15.32247 -15.01034 -14.50669 -14.03698 -13.97626 -13.96140 -12.99247 -12.96749 -12.70197 -12.63969 -12.45616 -12.35780 -11.96801 -11.52112 -11.37125 -11.28120 -11.15864 -11.06987 -10.89471 -10.81687 -10.02738 -9.56636 -9.42725 -9.30539 -8.83821 -8.61029 -8.27743 -6.26198 -4.29177 0.48562 0.77223 1.59389 1.85605 2.61356 3.00535 3.04474 3.23064 3.30059 3.37321 3.97002 4.22697 4.28801 4.48076 4.53680 4.68094 4.83729 4.85107 5.08453 5.08936 5.15002 5.33708 5.46124 5.56576 5.63863 5.66792 5.67958 5.99616 6.71481 6.86286 6.98930 7.09192 7.31091 8.03058 8.41151 8.66331 8.79115 9.33147 10.85673 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.002548 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.507760 B =10986.471726 C =12537.230353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.700 5.700 11 C 0.506 3.494 12 O -0.561 6.561 13 C -0.140 4.140 14 C 0.072 3.928 15 O -0.299 6.299 16 C 0.162 3.838 17 C -0.192 4.192 18 C 0.009 3.991 19 Cl -0.057 7.057 20 C -0.142 4.142 21 C -0.061 4.061 22 C -0.071 4.071 23 Cl -0.048 7.048 24 H 0.268 0.732 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.399 0.601 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.772 -15.962 0.023 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.348 5.348 11 C 0.290 3.710 12 O -0.441 6.441 13 C -0.180 4.180 14 C -0.003 4.003 15 O -0.212 6.212 16 C 0.114 3.886 17 C -0.211 4.211 18 C -0.018 4.018 19 Cl -0.028 7.028 20 C -0.161 4.161 21 C -0.080 4.080 22 C -0.098 4.098 23 Cl -0.019 7.019 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.233 0.767 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 23.944 -15.286 0.025 28.407 hybrid contribution -0.014 0.793 -0.022 0.793 sum 23.930 -14.493 0.003 27.976 Atomic orbital electron populations 1.69874 1.06224 1.27506 1.49190 1.24799 0.94799 0.99194 0.93811 0.86814 0.80553 0.83231 0.79074 1.19815 1.20844 1.18520 1.21078 0.88429 0.95295 1.53586 0.90173 1.19531 0.95370 0.78411 0.96907 1.46163 1.05497 1.11354 1.71822 1.20120 0.83482 0.89919 0.77452 1.90674 1.55501 1.46422 1.51541 1.21478 0.93975 0.96515 1.06055 1.22628 0.94422 0.79815 1.03445 1.86113 1.17075 1.30549 1.87434 1.18463 0.83623 0.91662 0.94854 1.21231 0.92001 0.99708 1.08177 1.20743 0.90688 0.89000 1.01343 1.98403 1.65154 1.42643 1.96580 1.20906 1.00899 0.89744 1.04523 1.20849 0.89862 0.99962 0.97327 1.20281 0.91540 0.86737 1.11277 1.98386 1.65801 1.40789 1.96957 0.92187 0.95571 0.96019 0.76690 0.87818 0.87813 0.90546 0.90553 0.82971 0.83884 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.23 4.50 -5.20 -0.02 5.21 16 10 N -0.70 -13.38 5.55 -61.47 -0.34 -13.72 16 11 C 0.51 8.81 7.83 -10.98 -0.09 8.72 16 12 O -0.56 -11.74 15.98 5.56 0.09 -11.65 16 13 C -0.14 -1.71 6.07 -27.88 -0.17 -1.88 16 14 C 0.07 0.85 4.03 37.16 0.15 1.00 16 15 O -0.30 -3.49 9.60 -19.51 -0.19 -3.68 16 16 C 0.16 1.76 6.68 -39.20 -0.26 1.50 16 17 C -0.19 -1.96 8.82 -39.40 -0.35 -2.31 16 18 C 0.01 0.09 6.32 -39.51 -0.25 -0.16 16 19 Cl -0.06 -0.51 28.95 -51.86 -1.50 -2.01 16 20 C -0.14 -1.05 9.83 -39.53 -0.39 -1.44 16 21 C -0.06 -0.46 9.82 -39.57 -0.39 -0.84 16 22 C -0.07 -0.69 6.33 -39.36 -0.25 -0.94 16 23 Cl -0.05 -0.47 28.50 -51.86 -1.48 -1.95 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 26 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 27 H 0.40 6.64 8.32 -40.82 -0.34 6.30 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 0.92 7.61 -51.93 -0.40 0.52 16 31 H 0.08 0.92 7.63 -51.93 -0.40 0.52 16 32 H 0.15 1.56 6.30 -52.48 -0.33 1.23 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -31.12 329.46 -8.30 -39.42 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.50 Total: 1.65 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.45 Total: -4.07 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.43 Total: -39.07 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.10 Total: -15.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.98 Total: -3.96 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.12 -8.30 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321376118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.111 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds