Wall clock time and date at job start Tue Mar 31 2020 11:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00336 * 3 2 1 5 5 H 1.48491 * 109.46838 * 30.00606 * 3 2 1 6 6 H 1.48505 * 109.46880 * 150.00618 * 3 2 1 7 7 C 1.37880 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00040 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00271 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99854 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46912 * 179.97438 * 13 11 10 15 15 O 1.42903 * 109.46726 * 179.97438 * 14 13 11 16 16 C 1.35925 * 116.99722 * 180.02562 * 15 14 13 17 17 C 1.38692 * 120.05493 * 359.72114 * 16 15 14 18 18 C 1.38264 * 119.94575 * 179.77029 * 17 16 15 19 19 Cl 1.73600 * 119.97291 * 180.25687 * 18 17 16 20 20 C 1.38393 * 120.04918 * 0.50823 * 18 17 16 21 21 C 1.38229 * 120.10535 * 359.74784 * 20 18 17 22 22 C 1.38264 * 120.05613 * 359.97438 * 21 20 18 23 23 Cl 1.73597 * 120.02560 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47629 * 59.99453 * 9 7 2 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 0.97005 * 120.00266 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.46980 * 59.99654 * 13 11 10 29 29 H 1.08992 * 109.47158 * 299.99760 * 13 11 10 30 30 H 1.09002 * 109.47398 * 300.00078 * 14 13 11 31 31 H 1.09001 * 109.47194 * 60.00258 * 14 13 11 32 32 H 1.08005 * 120.02764 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.94611 * 179.72093 * 20 18 17 34 34 H 1.07998 * 119.97278 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3248 -2.8216 -0.0009 12 8 6.1130 -1.8998 -0.0014 13 6 5.8271 -4.2425 -0.0002 14 6 7.3571 -4.2425 -0.0009 15 8 7.8334 -5.5898 0.0003 16 6 9.1810 -5.7679 0.0004 17 6 10.0269 -4.6688 -0.0065 18 6 11.3972 -4.8526 -0.0016 19 17 12.4567 -3.4774 -0.0035 20 6 11.9249 -6.1320 -0.0004 21 6 11.0837 -7.2289 0.0012 22 6 9.7127 -7.0502 0.0021 23 17 8.6571 -8.4283 0.0034 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8887 26 1 3.8744 -0.6801 -0.8912 27 1 3.3694 -3.3126 -0.0002 28 1 5.4637 -4.7568 -0.8899 29 1 5.4639 -4.7558 0.8900 30 1 7.7201 -3.7292 -0.8914 31 1 7.7209 -3.7281 0.8886 32 1 9.6155 -3.6702 -0.0116 33 1 12.9955 -6.2736 -0.0011 34 1 11.4978 -8.2263 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321376118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:27 Heat of formation + Delta-G solvation = -92.238289 kcal Electronic energy + Delta-G solvation = -20476.245851 eV Core-core repulsion = 16846.103410 eV Total energy + Delta-G solvation = -3630.142441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47131 -40.58919 -38.87487 -37.74824 -37.12648 -36.22305 -34.44512 -33.28852 -31.84931 -30.86801 -29.80016 -26.09825 -24.14839 -23.67311 -22.93241 -21.42450 -19.84130 -19.00921 -17.83039 -17.57170 -17.53334 -17.27130 -16.91660 -16.28247 -16.27245 -15.84957 -15.16724 -14.96550 -14.84206 -14.72025 -14.27650 -14.19219 -13.57924 -13.34886 -13.25980 -13.19820 -13.00656 -12.70163 -12.36679 -12.09573 -12.06601 -11.94203 -11.88360 -11.68765 -11.66752 -10.95860 -10.92661 -10.00041 -9.97316 -9.34286 -8.40565 -6.47839 -0.20903 0.09045 0.89765 1.14224 1.32572 1.35079 1.46854 1.64289 1.69004 2.27400 2.32386 2.65487 2.94959 3.51809 3.62212 3.80881 3.89677 3.92329 3.99528 4.20063 4.39765 4.45276 4.65933 4.69008 4.73613 4.79187 4.94688 5.02131 5.03432 5.25164 5.36235 5.47561 6.02541 6.06813 6.53542 6.78019 7.13700 7.34073 8.74159 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.002548 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.507760 B =10986.471726 C =12537.230353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.702 5.702 11 C 0.507 3.493 12 O -0.596 6.596 13 C -0.126 4.126 14 C 0.078 3.922 15 O -0.304 6.304 16 C 0.141 3.859 17 C -0.201 4.201 18 C 0.000 4.000 19 Cl -0.059 7.059 20 C -0.131 4.131 21 C -0.052 4.052 22 C -0.080 4.080 23 Cl -0.052 7.052 24 H 0.272 0.728 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.411 0.589 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.171 0.829 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.828 -17.076 -0.009 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.352 5.352 11 C 0.295 3.705 12 O -0.478 6.478 13 C -0.165 4.165 14 C 0.002 3.998 15 O -0.217 6.217 16 C 0.094 3.906 17 C -0.221 4.221 18 C -0.027 4.027 19 Cl -0.029 7.029 20 C -0.150 4.150 21 C -0.071 4.071 22 C -0.107 4.107 23 Cl -0.023 7.023 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.247 0.753 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.188 0.812 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 26.011 -16.438 -0.008 30.770 hybrid contribution -0.587 1.037 -0.011 1.192 sum 25.423 -15.401 -0.020 29.724 Atomic orbital electron populations 1.69980 1.07740 1.28629 1.50677 1.25616 0.95537 1.02735 0.93612 0.85853 0.79285 0.79288 0.79442 1.19005 1.19965 1.18296 1.21305 0.90024 0.94598 1.52626 0.92191 1.19122 0.93325 0.81012 0.95860 1.46003 1.06724 1.09904 1.72561 1.20897 0.82261 0.91772 0.75593 1.90658 1.56165 1.48247 1.52773 1.21370 0.94165 0.92726 1.08246 1.22462 0.94094 0.80217 1.03004 1.86066 1.17855 1.29844 1.87976 1.18639 0.83234 0.92383 0.96328 1.21215 0.92649 0.99335 1.08906 1.20900 0.90343 0.89746 1.01707 1.98402 1.64983 1.42958 1.96602 1.21246 1.02310 0.88801 1.02625 1.21211 0.88836 1.01382 0.95631 1.20510 0.92411 0.86196 1.11612 1.98384 1.66138 1.40742 1.96999 0.91853 0.96751 0.96851 0.75252 0.85510 0.85526 0.91105 0.91142 0.83731 0.81188 0.80421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.96 21.45 0.30 -54.91 16 2 C 0.03 1.41 5.47 84.66 0.46 1.88 16 3 Si 0.94 43.44 27.47 68.60 1.88 45.32 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 7 C -0.55 -29.67 9.83 25.60 0.25 -29.41 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 9 C 0.23 10.95 4.50 85.63 0.38 11.33 16 10 N -0.70 -26.39 5.55 -466.79 -2.59 -28.98 16 11 C 0.51 17.19 7.83 87.66 0.69 17.88 16 12 O -0.60 -24.77 15.98 -3.02 -0.05 -24.82 16 13 C -0.13 -2.83 6.07 29.85 0.18 -2.65 16 14 C 0.08 1.77 4.03 71.98 0.29 2.06 16 15 O -0.30 -6.76 9.60 -92.71 -0.89 -7.65 16 16 C 0.14 2.92 6.68 22.52 0.15 3.07 16 17 C -0.20 -3.99 8.82 22.38 0.20 -3.80 16 18 C 0.00 0.00 6.32 22.31 0.14 0.14 16 19 Cl -0.06 -0.99 28.95 -2.72 -0.08 -1.07 16 20 C -0.13 -1.59 9.83 22.30 0.22 -1.38 16 21 C -0.05 -0.63 9.82 22.27 0.22 -0.41 16 22 C -0.08 -1.41 6.33 22.41 0.14 -1.26 16 23 Cl -0.05 -0.92 28.50 -2.72 -0.08 -1.00 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.01 0.73 7.20 -2.39 -0.02 0.71 16 26 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 27 H 0.41 13.35 8.32 -92.70 -0.77 12.58 16 28 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.13 2.35 8.14 -2.39 -0.02 2.34 16 30 H 0.07 1.68 7.61 -2.39 -0.02 1.66 16 31 H 0.07 1.68 7.63 -2.39 -0.02 1.66 16 32 H 0.15 3.00 6.30 -2.91 -0.02 2.98 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -66.97 329.46 2.15 -64.82 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.32 Total: 10.82 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 3.33 Total: -2.54 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.29 Total: -83.89 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.94 Total: -32.47 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.16 Total: -2.06 kcal Total: -66.97 2.15 -64.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321376118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.422 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds