Wall clock time and date at job start Tue Mar 31 2020 10:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47239 * 289.15871 * 3 2 1 5 5 C 1.36857 * 120.00063 * 260.64447 * 4 3 2 6 6 H 1.07998 * 119.99649 * 198.63018 * 5 4 3 7 7 C 1.38974 * 120.00365 * 18.63245 * 5 4 3 8 8 N 1.31424 * 119.99537 * 21.11446 * 7 5 4 9 9 Si 1.86798 * 120.00044 * 201.11396 * 7 5 4 10 10 H 1.48496 * 109.46861 * 90.00343 * 9 7 5 11 11 H 1.48498 * 109.46856 * 209.99675 * 9 7 5 12 12 H 1.48493 * 109.47106 * 329.99882 * 9 7 5 13 13 C 1.34776 * 119.99558 * 80.64351 * 4 3 2 14 14 O 1.21819 * 119.99815 * 181.98332 * 13 4 3 15 15 C 1.41834 * 120.00308 * 1.98162 * 13 4 3 16 16 C 1.36949 * 125.16207 * 171.86079 * 15 13 4 17 17 C 1.36547 * 114.74374 * 179.70693 * 16 15 13 18 18 C 1.36971 * 114.73346 * 0.49945 * 17 16 15 19 19 C 1.46910 * 125.16055 * 179.78906 * 18 17 16 20 20 C 1.36303 * 125.33972 * 179.71929 * 19 18 17 21 21 C 1.37706 * 114.42339 * 179.97438 * 20 19 18 22 22 C 1.33749 * 115.19683 * 0.02562 * 21 20 19 23 23 S 1.75817 * 109.97932 * 359.73523 * 22 21 20 24 24 S 1.75833 * 109.67693 * 359.52608 * 18 17 16 25 25 H 4.40639 * 5.51411 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46915 * 169.16389 * 3 2 1 27 27 H 1.08994 * 109.47300 * 49.16315 * 3 2 1 28 28 H 0.97001 * 119.99690 * 180.02562 * 8 7 5 29 29 H 1.07998 * 122.62993 * 359.95738 * 16 15 13 30 30 H 1.07999 * 122.63172 * 180.30958 * 17 16 15 31 31 H 1.07995 * 122.79021 * 0.02633 * 20 19 18 32 32 H 1.08000 * 122.40147 * 179.97438 * 21 20 19 33 33 H 1.08000 * 125.00936 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4524 1.3047 5 6 3.5439 0.4618 2.2373 6 1 4.1717 0.1506 3.0592 7 6 3.1519 1.7905 2.1267 8 7 2.0932 2.1060 1.4148 9 14 4.1296 3.1277 2.9899 10 1 5.1950 3.6255 2.0831 11 1 3.2241 4.2478 3.3514 12 1 4.7469 2.5730 4.2213 13 6 3.1809 -1.7696 1.5866 14 8 3.5529 -2.1449 2.6842 15 6 2.7964 -2.7188 0.6053 16 6 2.9494 -4.0751 0.7174 17 6 2.4987 -4.7915 -0.3541 18 6 1.9771 -4.0358 -1.3704 19 6 1.4332 -4.5678 -2.6271 20 6 0.9084 -3.8196 -3.6383 21 6 0.4629 -4.5517 -4.7162 22 6 0.6121 -5.8762 -4.6058 23 16 1.3636 -6.2697 -3.0658 24 16 2.0504 -2.3326 -0.9394 25 1 -1.0499 0.0001 0.0002 26 1 3.0089 1.0102 -0.1932 27 1 3.0097 -0.6711 -0.7775 28 1 1.8198 3.0335 1.3373 29 1 3.3883 -4.5417 1.5869 30 1 2.5523 -5.8693 -0.3981 31 1 0.8478 -2.7421 -3.5980 32 1 0.0236 -4.0895 -5.5880 33 1 0.3182 -6.5975 -5.3540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321635141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:24 Heat of formation + Delta-G solvation = 111.501455 kcal Electronic energy + Delta-G solvation = -20724.849920 eV Core-core repulsion = 17550.771725 eV Total energy + Delta-G solvation = -3174.078196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.028 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.06362 -37.87687 -36.74955 -35.17527 -32.61427 -31.46587 -31.09147 -28.09749 -26.75201 -25.58793 -24.20756 -22.89975 -20.91913 -19.36549 -18.89156 -18.14765 -17.35643 -16.81782 -16.54397 -15.66057 -15.10948 -14.95333 -14.45680 -14.24878 -13.86112 -13.44149 -13.15654 -12.85342 -12.75461 -12.58958 -12.42362 -12.20386 -12.01814 -11.74704 -11.47748 -11.17298 -10.91470 -10.73538 -10.49412 -9.91870 -9.66331 -9.59367 -9.32891 -9.25685 -8.68571 -8.55068 -8.17735 -7.81838 -7.52535 -6.62270 -4.02792 0.27223 1.36902 1.46721 1.89735 2.14303 2.50887 2.60913 3.04487 3.13895 3.17217 3.18575 3.53953 3.82723 4.00384 4.17361 4.76750 4.78434 4.89124 5.00393 5.18573 5.40056 5.52425 5.57938 5.73035 5.77806 6.01079 6.05630 6.26326 6.34386 6.45513 6.46089 6.67565 6.78990 6.83877 7.30670 7.82723 8.18243 8.57139 8.89481 9.05161 9.68512 10.37959 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.003817 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.178242 B = 7334.691787 C = 8106.866506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.132 4.132 3 C 0.214 3.786 4 N -0.419 5.419 5 C -0.299 4.299 6 H 0.113 0.887 7 C 0.031 3.969 8 N -0.847 5.847 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.497 3.503 14 O -0.578 6.578 15 C -0.206 4.206 16 C -0.097 4.097 17 C -0.124 4.124 18 C -0.194 4.194 19 C -0.084 4.084 20 C -0.152 4.152 21 C -0.121 4.121 22 C -0.234 4.234 23 S 0.120 5.880 24 S 0.228 5.772 25 H 0.205 0.795 26 H 0.130 0.870 27 H 0.072 0.928 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 -8.666 -12.561 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.136 4.136 3 C 0.088 3.912 4 N -0.135 5.135 5 C -0.428 4.428 6 H 0.131 0.869 7 C -0.176 4.176 8 N -0.483 5.483 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.289 3.711 14 O -0.465 6.465 15 C -0.328 4.328 16 C -0.129 4.129 17 C -0.155 4.155 18 C -0.313 4.313 19 C -0.203 4.203 20 C -0.184 4.184 21 C -0.151 4.151 22 C -0.370 4.370 23 S 0.384 5.616 24 S 0.499 5.501 25 H 0.222 0.778 26 H 0.147 0.853 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.163 0.837 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.904 -8.707 -12.111 15.196 hybrid contribution -0.090 0.738 0.270 0.791 sum -2.995 -7.969 -11.841 14.584 Atomic orbital electron populations 1.24331 0.95334 1.03655 1.01022 1.22668 0.94087 0.97490 0.99342 1.18598 0.85275 1.02232 0.85079 1.43787 1.52814 1.04760 1.12171 1.19871 1.27975 0.87492 1.07424 0.86940 1.25469 0.95340 0.98985 0.97823 1.70078 1.19514 1.19889 1.38790 0.85856 0.79314 0.79469 0.79850 1.19914 1.20733 1.18992 1.15666 0.86397 0.81887 0.87193 1.90697 1.53720 1.78804 1.23229 1.23997 1.10337 0.98866 0.99599 1.20202 1.01594 0.91523 0.99546 1.20263 1.02132 0.99954 0.93184 1.23548 1.09430 1.01914 0.96450 1.22455 1.05462 0.95806 0.96574 1.20612 1.03346 1.01032 0.93368 1.19951 1.02435 0.92974 0.99780 1.25650 1.10006 0.99744 1.01634 1.84110 1.59235 1.05637 1.12629 1.85102 1.55419 0.98689 1.10855 0.77794 0.85293 0.91133 0.91427 0.83659 0.85179 0.84194 0.84286 0.82038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.37 19.19 29.55 0.57 -3.80 16 2 C -0.13 -2.81 8.89 -37.12 -0.33 -3.14 16 3 C 0.21 4.63 4.72 -6.83 -0.03 4.60 16 4 N -0.42 -10.52 2.61 -121.12 -0.32 -10.84 16 5 C -0.30 -7.91 9.29 -15.04 -0.14 -8.05 16 6 H 0.11 3.11 7.41 -52.49 -0.39 2.72 16 7 C 0.03 0.75 4.86 -17.45 -0.08 0.67 16 8 N -0.85 -20.83 9.68 55.50 0.54 -20.29 16 9 Si 0.93 19.20 29.60 -169.99 -5.03 14.16 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 13 C 0.50 12.58 7.33 -14.89 -0.11 12.47 16 14 O -0.58 -16.41 16.38 5.08 0.08 -16.33 16 15 C -0.21 -4.37 6.05 -38.67 -0.23 -4.61 16 16 C -0.10 -1.83 9.82 -40.66 -0.40 -2.23 16 17 C -0.12 -2.02 9.89 -40.65 -0.40 -2.43 16 18 C -0.19 -3.18 6.45 -36.53 -0.24 -3.41 16 19 C -0.08 -1.21 6.44 -36.77 -0.24 -1.45 16 20 C -0.15 -1.98 9.93 -40.47 -0.40 -2.38 16 21 C -0.12 -1.31 10.15 -41.35 -0.42 -1.73 16 22 C -0.23 -2.40 11.21 29.16 0.33 -2.07 16 23 S 0.12 1.41 22.90 -107.50 -2.46 -1.05 16 24 S 0.23 4.03 15.49 -107.50 -1.67 2.36 16 25 H 0.21 3.19 7.80 -54.10 -0.42 2.77 16 26 H 0.13 2.86 6.27 -51.92 -0.33 2.54 16 27 H 0.07 1.37 4.59 -21.77 -0.10 1.27 16 28 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 29 H 0.15 2.67 8.00 -52.49 -0.42 2.25 16 30 H 0.13 1.81 7.91 -52.49 -0.42 1.39 16 31 H 0.14 1.73 7.91 -52.49 -0.42 1.32 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -29.89 316.52 -8.68 -38.57 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -2.47 Total: 6.18 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.13 Total: -17.55 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.22 Total: -31.13 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.08 Total: -16.33 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -4.13 Total: 1.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.89 -8.68 -38.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321635141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.076 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds