Wall clock time and date at job start Tue Mar 31 2020 10:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47239 * 289.15871 * 3 2 1 5 5 C 1.36857 * 120.00063 * 260.64447 * 4 3 2 6 6 H 1.07998 * 119.99649 * 198.63018 * 5 4 3 7 7 C 1.38974 * 120.00365 * 18.63245 * 5 4 3 8 8 N 1.31424 * 119.99537 * 21.11446 * 7 5 4 9 9 Si 1.86798 * 120.00044 * 201.11396 * 7 5 4 10 10 H 1.48496 * 109.46861 * 90.00343 * 9 7 5 11 11 H 1.48498 * 109.46856 * 209.99675 * 9 7 5 12 12 H 1.48493 * 109.47106 * 329.99882 * 9 7 5 13 13 C 1.34776 * 119.99558 * 80.64351 * 4 3 2 14 14 O 1.21819 * 119.99815 * 181.98332 * 13 4 3 15 15 C 1.41834 * 120.00308 * 1.98162 * 13 4 3 16 16 C 1.36949 * 125.16207 * 171.86079 * 15 13 4 17 17 C 1.36547 * 114.74374 * 179.70693 * 16 15 13 18 18 C 1.36971 * 114.73346 * 0.49945 * 17 16 15 19 19 C 1.46910 * 125.16055 * 179.78906 * 18 17 16 20 20 C 1.36303 * 125.33972 * 179.71929 * 19 18 17 21 21 C 1.37706 * 114.42339 * 179.97438 * 20 19 18 22 22 C 1.33749 * 115.19683 * 0.02562 * 21 20 19 23 23 S 1.75817 * 109.97932 * 359.73523 * 22 21 20 24 24 S 1.75833 * 109.67693 * 359.52608 * 18 17 16 25 25 H 4.40639 * 5.51411 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46915 * 169.16389 * 3 2 1 27 27 H 1.08994 * 109.47300 * 49.16315 * 3 2 1 28 28 H 0.97001 * 119.99690 * 180.02562 * 8 7 5 29 29 H 1.07998 * 122.62993 * 359.95738 * 16 15 13 30 30 H 1.07999 * 122.63172 * 180.30958 * 17 16 15 31 31 H 1.07995 * 122.79021 * 0.02633 * 20 19 18 32 32 H 1.08000 * 122.40147 * 179.97438 * 21 20 19 33 33 H 1.08000 * 125.00936 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4524 1.3047 5 6 3.5439 0.4618 2.2373 6 1 4.1717 0.1506 3.0592 7 6 3.1519 1.7905 2.1267 8 7 2.0932 2.1060 1.4148 9 14 4.1296 3.1277 2.9899 10 1 5.1950 3.6255 2.0831 11 1 3.2241 4.2478 3.3514 12 1 4.7469 2.5730 4.2213 13 6 3.1809 -1.7696 1.5866 14 8 3.5529 -2.1449 2.6842 15 6 2.7964 -2.7188 0.6053 16 6 2.9494 -4.0751 0.7174 17 6 2.4987 -4.7915 -0.3541 18 6 1.9771 -4.0358 -1.3704 19 6 1.4332 -4.5678 -2.6271 20 6 0.9084 -3.8196 -3.6383 21 6 0.4629 -4.5517 -4.7162 22 6 0.6121 -5.8762 -4.6058 23 16 1.3636 -6.2697 -3.0658 24 16 2.0504 -2.3326 -0.9394 25 1 -1.0499 0.0001 0.0002 26 1 3.0089 1.0102 -0.1932 27 1 3.0097 -0.6711 -0.7775 28 1 1.8198 3.0335 1.3373 29 1 3.3883 -4.5417 1.5869 30 1 2.5523 -5.8693 -0.3981 31 1 0.8478 -2.7421 -3.5980 32 1 0.0236 -4.0895 -5.5880 33 1 0.3182 -6.5975 -5.3540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321635141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:23 Heat of formation + Delta-G solvation = 95.473782 kcal Electronic energy + Delta-G solvation = -20725.544932 eV Core-core repulsion = 17550.771725 eV Total energy + Delta-G solvation = -3174.773208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.028 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86750 -39.00536 -38.06588 -37.00759 -34.37180 -33.20093 -32.35669 -29.49626 -28.40813 -27.08836 -25.65970 -24.07922 -22.49432 -20.46437 -20.20738 -19.83428 -18.99111 -18.49594 -17.86879 -16.93619 -16.54356 -16.44920 -16.17830 -15.85728 -15.27758 -14.86365 -14.66483 -14.37175 -14.15607 -13.85341 -13.68402 -13.51111 -13.33270 -13.27981 -12.89073 -12.77227 -12.59638 -12.16417 -11.85832 -11.40094 -11.27650 -11.20979 -10.97126 -10.65437 -10.54156 -10.01637 -9.45628 -9.27856 -8.80631 -8.45990 -6.01182 -0.96724 0.22893 0.27361 0.71076 0.98764 1.24566 1.33794 1.42286 1.48855 1.53848 1.89131 1.98021 2.21944 2.31681 2.39016 2.98171 3.11373 3.60914 3.63376 4.02451 4.21047 4.30929 4.37249 4.42090 4.54850 4.66354 4.74715 4.95402 5.09514 5.19566 5.27532 5.32185 5.36981 5.44565 5.54459 5.94729 6.31119 6.98750 6.99672 7.19675 7.80428 8.53459 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.003817 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.178242 B = 7334.691787 C = 8106.866506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.219 3.781 4 N -0.433 5.433 5 C -0.350 4.350 6 H 0.081 0.919 7 C 0.007 3.993 8 N -0.861 5.861 9 Si 0.993 3.007 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.277 1.277 13 C 0.491 3.509 14 O -0.629 6.629 15 C -0.268 4.268 16 C -0.074 4.074 17 C -0.142 4.142 18 C -0.156 4.156 19 C -0.142 4.142 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.206 4.206 23 S 0.138 5.862 24 S 0.253 5.747 25 H 0.241 0.759 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.280 0.720 29 H 0.142 0.858 30 H 0.159 0.841 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 -10.061 -16.136 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.175 4.175 3 C 0.094 3.906 4 N -0.149 5.149 5 C -0.478 4.478 6 H 0.099 0.901 7 C -0.198 4.198 8 N -0.496 5.496 9 Si 0.815 3.185 10 H -0.185 1.185 11 H -0.197 1.197 12 H -0.202 1.202 13 C 0.284 3.716 14 O -0.520 6.520 15 C -0.389 4.389 16 C -0.108 4.108 17 C -0.173 4.173 18 C -0.276 4.276 19 C -0.261 4.261 20 C -0.166 4.166 21 C -0.167 4.167 22 C -0.343 4.343 23 S 0.403 5.597 24 S 0.525 5.475 25 H 0.257 0.743 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.186 0.814 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.762 -10.073 -15.706 19.257 hybrid contribution 0.293 0.824 1.020 1.344 sum -4.468 -9.249 -14.686 17.921 Atomic orbital electron populations 1.25209 0.96220 1.01901 0.99145 1.22823 0.94479 0.99141 1.01038 1.18579 0.86012 1.01883 0.84134 1.43870 1.53340 1.04531 1.13123 1.19710 1.30335 0.89058 1.08688 0.90065 1.26130 0.95716 0.99794 0.98179 1.70142 1.19854 1.20427 1.39225 0.84948 0.78249 0.76751 0.78506 1.18464 1.19741 1.20165 1.16243 0.85284 0.82648 0.87429 1.90617 1.55875 1.79886 1.25600 1.23646 1.14822 0.98824 1.01623 1.20407 0.99485 0.90985 0.99883 1.20383 1.03165 1.01256 0.92453 1.23874 1.05767 1.01087 0.96841 1.22485 1.09052 0.97976 0.96570 1.20943 1.00918 1.01479 0.93298 1.20231 1.03052 0.93176 1.00197 1.26214 1.06794 1.00309 1.00944 1.84106 1.58833 1.03355 1.13434 1.84752 1.54734 0.99648 1.08386 0.74260 0.86573 0.89287 0.90969 0.84064 0.82362 0.84021 0.81358 0.78560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.82 19.19 74.32 1.43 -6.39 16 2 C -0.17 -7.38 8.89 31.12 0.28 -7.10 16 3 C 0.22 9.87 4.72 84.57 0.40 10.27 16 4 N -0.43 -23.20 2.61 -655.26 -1.71 -24.91 16 5 C -0.35 -19.88 9.29 84.09 0.78 -19.10 16 6 H 0.08 4.96 7.41 -2.91 -0.02 4.94 16 7 C 0.01 0.37 4.86 84.93 0.41 0.78 16 8 N -0.86 -43.39 9.68 21.67 0.21 -43.18 16 9 Si 0.99 40.73 29.60 68.60 2.03 42.76 16 10 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.49 26.64 7.33 85.13 0.62 27.26 16 14 O -0.63 -38.71 16.38 -4.73 -0.08 -38.79 16 15 C -0.27 -11.86 6.05 22.86 0.14 -11.73 16 16 C -0.07 -2.86 9.82 21.57 0.21 -2.65 16 17 C -0.14 -4.50 9.89 21.58 0.21 -4.29 16 18 C -0.16 -4.84 6.45 24.24 0.16 -4.68 16 19 C -0.14 -3.65 6.44 24.09 0.16 -3.50 16 20 C -0.13 -2.97 9.93 21.69 0.22 -2.75 16 21 C -0.14 -2.28 10.15 21.12 0.21 -2.06 16 22 C -0.21 -3.08 11.21 66.80 0.75 -2.33 16 23 S 0.14 2.71 22.90 -56.49 -1.29 1.41 16 24 S 0.25 8.88 15.49 -56.49 -0.88 8.00 16 25 H 0.24 6.86 7.80 -4.42 -0.03 6.82 16 26 H 0.12 5.42 6.27 -2.38 -0.01 5.41 16 27 H 0.09 3.57 4.59 -21.57 -0.10 3.47 16 28 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 29 H 0.14 5.44 8.00 -2.91 -0.02 5.42 16 30 H 0.16 4.05 7.91 -2.91 -0.02 4.02 16 31 H 0.14 3.05 7.91 -2.91 -0.02 3.03 16 32 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -69.77 316.52 5.32 -64.45 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.06 Total: 18.51 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 5.97 Total: -28.26 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.50 Total: -68.09 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.08 Total: -38.79 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 11.58 SS G_CDS: -2.17 Total: 9.42 kcal Total: -69.77 5.32 -64.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321635141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.926 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds