Wall clock time and date at job start Tue Mar 31 2020 11:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 Cl 1.80302 * 109.46612 * 2 1 4 4 Cl 1.80300 * 109.47363 * 239.99961 * 2 1 3 5 5 C 1.50700 * 109.46975 * 119.99587 * 2 1 3 6 6 O 1.21274 * 120.00375 * 25.00318 * 5 2 1 7 7 N 1.34783 * 119.99813 * 205.00071 * 5 2 1 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 2 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46908 * 119.99967 * 19 17 15 22 22 H 1.48504 * 109.47373 * 240.00300 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.08998 * 109.47238 * 299.99799 * 1 2 3 25 25 H 1.08998 * 109.47245 * 60.00710 * 1 2 3 26 26 H 1.09008 * 109.46458 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99718 * 0.02562 * 7 5 2 28 28 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 29 29 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 30 30 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 31 31 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 32 32 H 1.08006 * 120.03715 * 180.31908 * 12 11 10 33 33 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 34 34 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 17 2.1309 1.7000 0.0000 4 17 2.1311 -0.8499 -1.4721 5 6 2.0323 -0.7103 1.2305 6 8 1.3371 -1.5392 1.7785 7 7 3.2544 -0.4244 1.7220 8 6 3.7429 -1.1153 2.9179 9 6 5.1241 -0.6169 3.2570 10 6 6.2353 -1.2443 2.7231 11 6 7.5044 -0.7902 3.0323 12 6 7.6657 0.2957 3.8703 13 6 6.5525 0.9241 4.4123 14 8 6.7080 1.9879 5.2411 15 6 7.9689 2.3096 5.5941 16 1 8.8034 1.7822 5.1563 17 6 8.1940 3.3177 6.5191 18 7 7.1774 3.9599 7.0527 19 14 9.9409 3.7630 7.0087 20 1 10.8971 2.8986 6.2713 21 1 10.2012 5.1862 6.6740 22 1 10.1130 3.5584 8.4695 23 6 5.2790 0.4652 4.1004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 3.8103 0.2388 1.2839 28 1 3.7798 -2.1881 2.7281 29 1 3.0704 -0.9169 3.7523 30 1 6.1116 -2.0905 2.0635 31 1 8.3700 -1.2824 2.6142 32 1 8.6570 0.6532 4.1073 33 1 7.3349 4.6649 7.7001 34 1 4.4110 0.9541 4.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337309369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:57 Heat of formation + Delta-G solvation = -78.944180 kcal Electronic energy + Delta-G solvation = -21042.383070 eV Core-core repulsion = 17412.817105 eV Total energy + Delta-G solvation = -3629.565965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31993 -40.69767 -38.55330 -37.91425 -37.23568 -36.02857 -34.29485 -33.20864 -32.23004 -30.79596 -27.93339 -27.17527 -25.05002 -23.27742 -22.45350 -21.67231 -19.73076 -19.09178 -18.58482 -17.77039 -17.31767 -16.76065 -16.49999 -16.11934 -15.72395 -15.57152 -15.39659 -15.07952 -14.82559 -14.36045 -13.97794 -13.73838 -13.40380 -13.34524 -13.17476 -13.07463 -12.87598 -12.56060 -12.40157 -12.33553 -12.29053 -12.09187 -12.06604 -11.99375 -11.24657 -11.14772 -10.82188 -10.37203 -9.78737 -9.04546 -8.47513 -6.15919 -0.03714 0.28558 0.34103 0.69405 1.35829 1.43066 1.53643 1.57465 1.77495 2.16919 2.79232 2.99774 3.14768 3.35734 3.36877 3.78300 4.07723 4.28623 4.37933 4.43743 4.50015 4.50476 4.59792 4.71868 4.92825 4.99364 5.05849 5.11873 5.24391 5.60353 5.68408 5.70426 6.00859 6.08155 6.16544 6.69959 6.97521 7.77441 8.75676 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.002905 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.498227 B = 9637.394908 C =10081.527715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 Cl -0.116 7.116 4 Cl -0.102 7.102 5 C 0.519 3.481 6 O -0.532 6.532 7 N -0.700 5.700 8 C 0.171 3.829 9 C -0.064 4.064 10 C -0.167 4.167 11 C -0.070 4.070 12 C -0.233 4.233 13 C 0.112 3.888 14 O -0.232 6.232 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.017 2.983 20 H -0.250 1.250 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.179 4.179 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.412 0.588 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.272 0.728 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 -9.525 -16.190 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 Cl -0.090 7.090 4 Cl -0.076 7.076 5 C 0.302 3.698 6 O -0.409 6.409 7 N -0.351 5.351 8 C 0.049 3.951 9 C -0.064 4.064 10 C -0.186 4.186 11 C -0.088 4.088 12 C -0.252 4.252 13 C 0.062 3.938 14 O -0.138 6.138 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.837 3.163 20 H -0.173 1.173 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.199 4.199 24 H 0.112 0.888 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.249 0.751 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.118 -9.752 -15.651 20.572 hybrid contribution 1.126 1.056 0.319 1.576 sum -7.991 -8.697 -15.332 19.354 Atomic orbital electron populations 1.22362 0.84966 1.06487 1.06360 1.27019 1.00460 0.83337 0.87526 1.98828 1.89827 1.21982 1.98347 1.98809 1.89986 1.78511 1.40248 1.19917 0.82170 0.83078 0.84668 1.90777 1.56622 1.33810 1.59717 1.46122 1.16690 1.42823 1.29491 1.20240 0.90690 0.97270 0.86867 1.19412 0.95107 0.94855 0.97039 1.21023 0.91146 1.02713 1.03744 1.21163 0.98494 0.94049 0.95090 1.21388 0.98320 1.01129 1.04394 1.19853 0.95102 0.87822 0.91046 1.83947 1.31079 1.41183 1.57631 1.21860 0.81800 1.20058 1.25114 0.87915 1.26562 1.04658 0.95454 0.95319 1.70185 1.33257 1.23495 1.28870 0.84546 0.74553 0.78713 0.78521 1.17308 1.19466 1.19508 1.20241 0.94232 1.00464 1.04945 0.88849 0.87240 0.88194 0.75100 0.88333 0.90571 0.83278 0.83354 0.86205 0.91882 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.25 71.98 0.59 -1.48 16 2 C 0.07 1.33 1.53 29.85 0.05 1.38 16 3 Cl -0.12 -2.31 26.93 -2.72 -0.07 -2.38 16 4 Cl -0.10 -1.83 28.18 -2.72 -0.08 -1.91 16 5 C 0.52 12.14 6.75 87.66 0.59 12.73 16 6 O -0.53 -14.89 16.09 -3.01 -0.05 -14.94 16 7 N -0.70 -16.51 5.37 -466.79 -2.51 -19.01 16 8 C 0.17 4.31 5.80 85.63 0.50 4.80 16 9 C -0.06 -1.93 5.25 -19.88 -0.10 -2.03 16 10 C -0.17 -4.59 9.70 22.30 0.22 -4.37 16 11 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 12 C -0.23 -9.45 9.17 22.39 0.21 -9.24 16 13 C 0.11 5.29 6.65 22.58 0.15 5.44 16 14 O -0.23 -13.54 9.76 -22.74 -0.22 -13.76 16 15 C -0.41 -23.38 9.49 67.92 0.64 -22.74 16 16 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 17 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 18 N -0.92 -55.72 13.67 21.61 0.30 -55.42 16 19 Si 1.02 42.02 29.55 68.60 2.03 44.05 16 20 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 C -0.18 -7.13 9.65 22.39 0.22 -6.92 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.43 7.87 -2.38 -0.02 1.42 16 27 H 0.41 9.48 7.32 -92.71 -0.68 8.80 16 28 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 29 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 30 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.12 4.98 5.64 -2.91 -0.02 4.97 16 33 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -68.72 329.60 3.61 -65.10 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.47 Total: 23.41 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 3.74 Total: -25.13 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.21 Total: -74.44 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.27 Total: -28.70 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 17 Polarization: -4.14 SS G_CDS: -0.15 Total: -4.29 kcal Total: -68.72 3.61 -65.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337309369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.843 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds