Wall clock time and date at job start Tue Mar 31 2020 11:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21578 * 120.00354 * 179.86402 * 13 12 11 15 15 C 1.47627 * 119.99932 * 359.87068 * 13 12 11 16 16 C 1.39877 * 120.16607 * 89.72424 * 15 13 12 17 17 F 1.35102 * 120.08121 * 359.97438 * 16 15 13 18 18 C 1.38226 * 119.84588 * 179.74293 * 16 15 13 19 19 C 1.38283 * 120.17171 * 0.51042 * 18 16 15 20 20 C 1.38522 * 120.34464 * 359.76740 * 19 18 16 21 21 F 1.35094 * 119.92982 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.15036 * 359.97032 * 20 19 18 23 23 Cl 1.73603 * 120.09221 * 180.02562 * 22 20 19 24 24 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 27 27 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 28 28 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 29 29 H 1.07999 * 119.91117 * 180.22919 * 18 16 15 30 30 H 1.08008 * 119.82878 * 179.74357 * 19 18 16 31 31 H 1.08993 * 113.76952 * 221.15022 * 24 12 11 32 32 H 1.08993 * 113.76905 * 89.74994 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3860 -6.4995 0.8978 15 6 -0.1997 -5.7236 2.4261 16 6 -1.5429 -5.8371 2.0525 17 9 -1.8909 -5.7728 0.7487 18 6 -2.5129 -6.0201 3.0201 19 6 -2.1596 -6.0804 4.3557 20 6 -0.8324 -5.9631 4.7345 21 9 -0.4967 -6.0228 6.0417 22 6 0.1499 -5.7852 3.7776 23 17 1.8129 -5.6390 4.2540 24 6 2.1609 -3.7402 0.0462 25 1 -0.4850 0.8401 0.0004 26 1 -0.3474 -1.7969 -1.0267 27 1 1.3275 -2.4975 2.2141 28 1 -0.3215 -2.8326 1.5249 29 1 -3.5499 -6.1115 2.7326 30 1 -2.9226 -6.2193 5.1075 31 1 2.2027 -4.2899 -0.8940 32 1 3.1456 -3.5472 0.4717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351204831.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:17 Heat of formation + Delta-G solvation = -129.699491 kcal Electronic energy + Delta-G solvation = -24383.834359 eV Core-core repulsion = 20200.270798 eV Total energy + Delta-G solvation = -4183.563561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -50.26307 -50.18773 -41.51534 -40.06517 -38.86062 -37.86168 -35.87640 -34.16544 -32.92765 -31.37343 -30.25388 -27.41708 -27.11651 -25.23267 -24.12538 -22.12049 -20.57635 -19.49553 -19.04220 -18.76876 -18.64613 -17.94077 -17.31801 -17.13133 -16.79953 -16.62506 -16.28084 -16.04358 -15.95004 -15.61574 -15.02445 -14.62876 -14.37964 -14.27809 -14.05746 -13.97916 -13.75282 -13.44503 -12.99048 -12.90907 -12.75884 -12.59940 -12.39593 -12.26813 -12.24278 -11.57736 -11.13090 -10.67856 -10.40962 -10.34144 -9.88405 -9.73801 -8.27865 -6.44767 -0.60188 -0.48916 0.57211 1.21167 1.46480 1.50086 1.58703 1.65582 1.94989 2.40117 2.69757 2.79653 2.93820 3.08461 3.45728 3.60845 3.69573 3.86166 4.09067 4.34175 4.39269 4.44913 4.52279 4.64352 4.69573 4.76146 4.78461 4.82813 5.18304 5.34151 5.71436 5.89582 6.57775 6.61002 6.81464 7.28332 7.41684 8.78656 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.004601 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.133733 B = 6084.528410 C = 6356.645980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.035 3.965 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.225 3.775 10 O -0.584 6.584 11 C 0.095 3.905 12 N -0.619 5.619 13 C 0.574 3.426 14 O -0.576 6.576 15 C -0.141 4.141 16 C 0.115 3.885 17 F -0.132 7.132 18 C -0.096 4.096 19 C -0.071 4.071 20 C 0.100 3.900 21 F -0.117 7.117 22 C -0.038 4.038 23 Cl -0.036 7.036 24 C 0.113 3.887 25 H 0.276 0.724 26 H 0.388 0.612 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.202 0.798 30 H 0.212 0.788 31 H 0.065 0.935 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -7.650 11.598 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.166 4.166 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.183 3.817 10 O -0.396 6.396 11 C -0.027 4.027 12 N -0.350 5.350 13 C 0.363 3.637 14 O -0.458 6.458 15 C -0.146 4.146 16 C 0.095 3.905 17 F -0.111 7.111 18 C -0.115 4.115 19 C -0.090 4.090 20 C 0.080 3.920 21 F -0.095 7.095 22 C -0.066 4.066 23 Cl -0.007 7.007 24 C -0.008 4.008 25 H 0.086 0.914 26 H 0.242 0.758 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.219 0.781 30 H 0.229 0.771 31 H 0.083 0.917 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.499 -8.755 11.294 15.698 hybrid contribution 0.642 1.325 -0.178 1.483 sum -5.857 -7.430 11.115 14.597 Atomic orbital electron populations 1.69463 1.07064 1.28978 1.49937 1.25729 0.95770 1.02513 0.92568 0.85399 0.78543 0.78358 0.78400 1.19757 1.19537 1.20813 1.21678 0.94176 0.90518 1.53001 0.90839 1.20047 0.85786 0.91799 0.84033 1.86062 1.47437 1.49750 1.56300 1.24214 0.99785 0.76749 1.01951 1.50235 1.39523 1.04648 1.40608 1.17773 0.82424 0.82042 0.81491 1.90737 1.56999 1.40206 1.57859 1.19611 0.94075 1.08083 0.92787 1.17941 0.91128 1.01789 0.79677 1.91574 1.92177 1.93386 1.33949 1.21535 1.01169 0.98404 0.90366 1.21621 0.93503 0.96430 0.97416 1.17346 0.92799 1.04223 0.77642 1.91579 1.93123 1.93596 1.31238 1.20781 0.87771 1.06321 0.91761 1.98414 1.14920 1.95952 1.91411 1.23567 0.94047 0.91856 0.91337 0.91394 0.75761 0.88914 0.91863 0.78059 0.77126 0.91676 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.20 11.20 21.45 0.24 -44.96 16 2 C 0.04 1.70 5.40 84.66 0.46 2.16 16 3 Si 0.97 38.78 29.54 68.60 2.03 40.81 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.56 -27.34 8.61 25.60 0.22 -27.12 16 8 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.22 10.74 1.40 -10.88 -0.02 10.73 16 10 O -0.58 -30.27 13.49 -148.98 -2.01 -32.28 16 11 C 0.10 4.13 8.00 86.45 0.69 4.82 16 12 N -0.62 -26.97 3.61 -843.27 -3.05 -30.01 16 13 C 0.57 24.74 6.18 86.72 0.54 25.27 16 14 O -0.58 -28.18 17.83 -3.96 -0.07 -28.25 16 15 C -0.14 -4.87 5.38 -20.04 -0.11 -4.98 16 16 C 0.12 3.36 7.29 22.66 0.17 3.53 16 17 F -0.13 -4.57 16.83 44.97 0.76 -3.82 16 18 C -0.10 -1.64 10.01 22.28 0.22 -1.42 16 19 C -0.07 -1.01 10.01 22.35 0.22 -0.78 16 20 C 0.10 2.20 7.26 22.35 0.16 2.36 16 21 F -0.12 -2.51 16.83 44.97 0.76 -1.75 16 22 C -0.04 -1.12 6.36 22.64 0.14 -0.98 16 23 Cl -0.04 -1.13 27.70 -2.72 -0.08 -1.21 16 24 C 0.11 5.01 8.23 86.49 0.71 5.72 16 25 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 26 H 0.39 20.25 6.60 -74.06 -0.49 19.76 16 27 H 0.09 3.85 8.09 -2.39 -0.02 3.83 16 28 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 30 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.11 4.30 8.09 -2.39 -0.02 4.28 16 Total: -1.00 -63.62 313.76 2.71 -60.91 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.71 Total: 21.24 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 3.41 Total: 19.33 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.81 Total: -74.98 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -2.08 Total: -60.53 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 1.51 Total: -5.57 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -63.62 2.71 -60.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351204831.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.787 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds