Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39925 * 120.45761 * 313.14779 * 3 2 1 5 5 N 1.31317 * 120.74234 * 179.74553 * 4 3 2 6 6 C 1.32825 * 121.81118 * 0.56720 * 5 4 3 7 7 C 1.48088 * 119.57695 * 179.70623 * 6 5 4 8 8 O 1.21553 * 119.99985 * 179.73051 * 7 6 5 9 9 N 1.34777 * 119.99726 * 359.72765 * 7 6 5 10 10 C 1.40481 * 119.99680 * 179.72225 * 9 7 6 11 11 C 1.40675 * 126.08808 * 0.30625 * 10 9 7 12 12 N 1.30900 * 108.38591 * 179.97438 * 11 10 9 13 13 N 1.40072 * 108.41329 * 359.97438 * 12 11 10 14 14 C 1.37313 * 126.06129 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00129 * 179.97438 * 14 13 12 16 16 C 1.38994 * 120.00044 * 359.97438 * 14 13 12 17 17 N 1.31293 * 119.99958 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46941 * 89.99762 * 18 16 14 20 20 H 1.48502 * 109.46514 * 209.99424 * 18 16 14 21 21 H 1.48500 * 109.47041 * 329.99332 * 18 16 14 22 22 C 1.35716 * 126.08628 * 179.97438 * 10 9 7 23 23 C 1.39498 * 120.84279 * 359.43308 * 6 5 4 24 24 Cl 1.73598 * 120.41162 * 180.29470 * 23 6 5 25 25 C 1.38546 * 119.16832 * 0.27283 * 23 6 5 26 26 H 1.08001 * 119.63078 * 0.04436 * 4 3 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 28 28 H 1.08004 * 125.80819 * 0.02562 * 11 10 9 29 29 H 0.96998 * 119.99957 * 180.02562 * 17 16 14 30 30 H 1.07998 * 126.25190 * 359.97438 * 22 10 9 31 31 H 1.08002 * 120.82333 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2777 -0.8239 0.8800 5 7 4.5908 -0.8315 0.8813 6 6 5.2963 -0.0573 0.0645 7 6 6.7757 -0.1008 0.1123 8 8 7.4289 0.6008 -0.6351 9 7 7.3980 -0.9183 0.9847 10 6 8.8014 -0.9638 1.0261 11 6 9.6789 -0.2114 0.2243 12 7 10.9073 -0.5243 0.5507 13 7 10.8635 -1.4843 1.5698 14 6 11.9477 -2.0643 2.1810 15 1 11.8002 -2.7973 2.9603 16 6 13.2351 -1.7079 1.7969 17 7 13.4145 -0.8171 0.8492 18 14 14.7100 -2.4965 2.6290 19 1 15.0968 -3.7252 1.8902 20 1 15.8469 -1.5411 2.6302 21 1 14.3588 -2.8498 4.0279 22 6 9.5521 -1.7370 1.8511 23 6 4.6613 0.7920 -0.8419 24 17 5.5944 1.7935 -1.9097 25 6 3.2768 0.8259 -0.8794 26 1 2.7394 -1.4649 1.5625 27 1 6.8768 -1.4784 1.5810 28 1 9.3885 0.5035 -0.5313 29 1 14.3129 -0.5687 0.5809 30 1 9.1799 -2.4271 2.5937 31 1 2.7576 1.4738 -1.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361865689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = 106.171687 kcal Electronic energy + Delta-G solvation = -21931.599849 eV Core-core repulsion = 18241.246367 eV Total energy + Delta-G solvation = -3690.353481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05669 -41.41333 -39.85369 -37.86907 -37.61383 -35.93631 -35.00077 -33.95171 -32.70776 -32.14880 -29.69655 -27.35417 -26.24743 -24.96256 -23.02416 -22.46418 -21.19059 -20.45965 -19.59697 -18.79439 -18.21971 -17.38318 -16.70296 -16.57000 -16.42274 -16.09154 -15.60679 -15.58350 -15.01363 -14.85096 -14.67216 -14.55527 -14.26791 -14.24679 -13.67258 -13.45021 -13.28785 -13.11066 -12.89248 -12.85491 -12.29836 -12.06471 -11.82311 -11.31907 -11.04332 -10.98136 -10.77572 -10.42195 -10.23109 -10.05764 -8.48599 -8.43895 -6.20151 -1.11135 -0.22283 0.86994 1.13827 1.39373 1.42571 1.48932 1.60027 1.77863 1.92672 2.02943 2.19750 2.47879 2.47979 2.73831 2.79962 3.08907 3.12770 3.39779 3.50571 3.74368 3.97910 4.38194 4.48928 4.62287 4.64976 5.01394 5.04413 5.11627 5.32745 5.46178 5.99104 6.17993 6.31900 6.37665 6.73336 6.76862 7.30028 7.49472 7.71923 8.55356 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.031358 B = 0.002715 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.690189 B =10311.027773 C =11193.855292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.286 3.714 3 C -0.036 4.036 4 C 0.170 3.830 5 N -0.451 5.451 6 C 0.120 3.880 7 C 0.537 3.463 8 O -0.533 6.533 9 N -0.591 5.591 10 C -0.046 4.046 11 C -0.051 4.051 12 N -0.310 5.310 13 N -0.168 5.168 14 C -0.352 4.352 15 H 0.141 0.859 16 C -0.007 4.007 17 N -0.824 5.824 18 Si 1.018 2.982 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.244 1.244 22 C -0.077 4.077 23 C -0.054 4.054 24 Cl -0.018 7.018 25 C -0.007 4.007 26 H 0.219 0.781 27 H 0.423 0.577 28 H 0.173 0.827 29 H 0.276 0.724 30 H 0.188 0.812 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.736 -0.765 0.908 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.031 4.031 3 C -0.042 4.042 4 C 0.007 3.993 5 N -0.161 5.161 6 C -0.018 4.018 7 C 0.323 3.677 8 O -0.410 6.410 9 N -0.236 5.236 10 C -0.152 4.152 11 C -0.227 4.227 12 N -0.142 5.142 13 N 0.064 4.936 14 C -0.483 4.483 15 H 0.158 0.842 16 C -0.218 4.218 17 N -0.452 5.452 18 Si 0.837 3.163 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.167 1.167 22 C -0.227 4.227 23 C -0.084 4.084 24 Cl 0.012 6.988 25 C -0.035 4.035 26 H 0.235 0.765 27 H 0.261 0.739 28 H 0.190 0.810 29 H 0.086 0.914 30 H 0.205 0.795 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.040 -0.388 0.499 19.051 hybrid contribution -0.215 0.220 -0.254 0.398 sum -19.255 -0.168 0.245 19.257 Atomic orbital electron populations 1.81382 1.12653 1.08227 1.08128 1.24918 0.91508 0.93309 0.93330 1.16925 0.85387 1.01342 1.00560 1.23689 0.87955 0.93537 0.94129 1.67869 1.09182 1.19005 1.20086 1.20930 0.93582 0.93899 0.93423 1.18086 0.86510 0.81464 0.81689 1.90794 1.65694 1.42723 1.41749 1.42219 1.03218 1.40987 1.37149 1.17270 0.83150 1.08341 1.06430 1.24243 0.90006 1.04459 1.03997 1.78162 1.19559 1.09273 1.07207 1.44833 1.04351 1.23358 1.21094 1.20602 0.83243 1.24111 1.20372 0.84177 1.26857 1.02696 0.96012 0.96251 1.70393 1.23991 1.26167 1.24631 0.84610 0.74865 0.77632 0.79215 1.18960 1.20327 1.16727 1.22001 0.84073 1.09047 1.07609 1.21810 0.93283 0.97162 0.96174 1.98470 1.72578 1.65976 1.61824 1.21827 0.90061 0.95516 0.96131 0.76498 0.73857 0.80983 0.91442 0.79539 0.79330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.26 18.54 19.00 0.35 -6.91 16 2 C 0.29 3.27 15.36 88.33 1.36 4.63 16 3 C -0.04 -0.34 5.75 -21.23 -0.12 -0.47 16 4 C 0.17 1.64 10.91 85.18 0.93 2.57 16 5 N -0.45 -7.80 9.51 -183.82 -1.75 -9.55 16 6 C 0.12 2.79 6.75 41.91 0.28 3.07 16 7 C 0.54 17.79 7.77 86.86 0.68 18.47 16 8 O -0.53 -21.16 11.06 -3.88 -0.04 -21.20 16 9 N -0.59 -20.12 5.45 -306.31 -1.67 -21.79 16 10 C -0.05 -2.04 6.90 37.76 0.26 -1.78 16 11 C -0.05 -2.72 10.85 85.43 0.93 -1.79 16 12 N -0.31 -18.38 10.39 -56.45 -0.59 -18.97 16 13 N -0.17 -9.16 3.74 -190.00 -0.71 -9.87 16 14 C -0.35 -18.38 10.25 84.02 0.86 -17.52 16 15 H 0.14 6.32 7.83 -2.91 -0.02 6.29 16 16 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 17 N -0.82 -47.16 11.81 21.66 0.26 -46.91 16 18 Si 1.02 38.18 29.55 68.60 2.03 40.21 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 20 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.24 -8.29 7.11 99.48 0.71 -7.58 16 22 C -0.08 -3.47 11.49 83.39 0.96 -2.51 16 23 C -0.05 -1.05 6.36 22.65 0.14 -0.91 16 24 Cl -0.02 -0.44 26.00 -2.72 -0.07 -0.51 16 25 C -0.01 -0.08 9.70 22.74 0.22 0.14 16 26 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 27 H 0.42 11.36 8.14 -92.71 -0.75 10.61 16 28 H 0.17 9.04 5.92 -2.91 -0.02 9.02 16 29 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.19 6.64 8.06 -2.91 -0.02 6.62 16 31 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -75.07 309.34 5.25 -69.81 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.49 Total: 21.65 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.96 Total: 4.03 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -4.11 Total: -114.00 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.51 kcal Total: -75.07 5.25 -69.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361865689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.985 kcal (2) G-P(sol) polarization free energy of solvation -75.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds