Wall clock time and date at job start Tue Mar 31 2020 12:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47469 * 2 1 4 4 H 1.09005 * 109.46957 * 304.89805 * 3 2 1 5 5 C 1.50692 * 109.47524 * 184.89890 * 3 2 1 6 6 H 1.08005 * 120.00416 * 245.45497 * 5 3 2 7 7 C 1.37881 * 120.00187 * 65.44768 * 5 3 2 8 8 N 1.31511 * 119.99916 * 9.47283 * 7 5 3 9 9 Si 1.86797 * 120.00250 * 189.46945 * 7 5 3 10 10 H 1.48507 * 109.46902 * 84.99787 * 9 7 5 11 11 H 1.48496 * 109.47210 * 204.99425 * 9 7 5 12 12 H 1.48499 * 109.47457 * 324.99733 * 9 7 5 13 13 N 1.46505 * 109.47160 * 64.89499 * 3 2 1 14 14 C 1.34771 * 120.00067 * 275.00533 * 13 3 2 15 15 O 1.21701 * 120.00304 * 359.97438 * 14 13 3 16 16 C 1.46586 * 120.00135 * 180.02562 * 14 13 3 17 17 C 1.36642 * 125.46122 * 180.02562 * 16 14 13 18 18 C 1.37476 * 113.29822 * 179.71606 * 17 16 14 19 19 C 1.33814 * 115.09712 * 0.48541 * 18 17 16 20 20 S 1.76200 * 124.51974 * 179.78639 * 19 18 17 21 21 C 1.81402 * 104.44891 * 89.72934 * 20 19 18 22 22 O 1.42099 * 104.27669 * 333.65626 * 20 19 18 23 23 O 1.42108 * 104.27671 * 205.79924 * 20 19 18 24 24 S 1.70615 * 110.95765 * 359.52886 * 19 18 17 25 25 H 1.09003 * 109.46656 * 60.00403 * 1 2 3 26 26 H 1.09003 * 109.47065 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47209 * 300.00375 * 1 2 3 28 28 H 1.09001 * 109.47209 * 239.99625 * 2 1 3 29 29 H 1.09006 * 109.46913 * 120.00044 * 2 1 3 30 30 H 0.96991 * 120.00522 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99782 * 95.00394 * 13 3 2 32 32 H 1.08007 * 123.34802 * 359.93961 * 17 16 14 33 33 H 1.07996 * 122.44799 * 180.27309 * 18 17 16 34 34 H 1.09005 * 109.47052 * 299.99981 * 21 20 19 35 35 H 1.09003 * 109.46940 * 59.99726 * 21 20 19 36 36 H 1.09000 * 109.47328 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1213 6 1 4.1494 1.8090 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7113 -2.3325 9 14 5.9920 0.7327 -1.3288 10 1 6.3290 -0.6068 -0.7833 11 1 6.4619 0.8273 -2.7342 12 1 6.6563 1.7808 -0.5131 13 7 1.6504 2.0983 1.2508 14 6 0.4329 2.6652 1.3635 15 8 -0.3426 2.6328 0.4262 16 6 0.0432 3.3218 2.6148 17 6 -1.1578 3.9293 2.8506 18 6 -1.2597 4.4602 4.1146 19 6 -0.1770 4.3033 4.8851 20 16 -0.0361 4.8898 6.5406 21 6 -0.6511 3.5208 7.5597 22 8 -0.9283 5.9943 6.5983 23 8 1.3610 5.0657 6.7324 24 16 1.0462 3.4534 4.0530 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8313 0.3851 -3.1429 31 1 2.2686 2.1244 1.9978 32 1 -1.9497 3.9835 2.1181 33 1 -2.1474 4.9698 4.4592 34 1 -1.6851 3.3042 7.2913 35 1 -0.0380 2.6361 7.3878 36 1 -0.6000 3.7999 8.6121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411987389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:32 Heat of formation + Delta-G solvation = -77.499635 kcal Electronic energy + Delta-G solvation = -21830.420712 eV Core-core repulsion = 18340.837894 eV Total energy + Delta-G solvation = -3489.582818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.43975 -37.76078 -37.25809 -36.24456 -35.16167 -32.55963 -31.40408 -30.20070 -29.68095 -27.21769 -25.28151 -23.16822 -21.57099 -20.44599 -19.68879 -19.15266 -18.56891 -16.84946 -16.56148 -16.42311 -15.93342 -15.53761 -15.33322 -14.84535 -14.45440 -14.01489 -13.68409 -13.60152 -13.40886 -13.13987 -12.81010 -12.65874 -12.36025 -12.28911 -12.20182 -11.72342 -11.59234 -11.45322 -11.33952 -11.10793 -11.06727 -10.86010 -10.46707 -10.30821 -9.84337 -9.41395 -9.32685 -9.22303 -8.78332 -8.57227 -8.07100 -6.22575 -4.28897 -0.33527 0.09496 1.21740 1.57465 2.11749 2.53144 3.21427 3.28572 3.29813 3.53110 3.56988 3.76248 3.88535 4.30492 4.37549 4.60718 5.00518 5.10864 5.16006 5.17248 5.23414 5.57436 5.88332 6.10270 6.23711 6.27177 6.47181 6.86815 7.02845 7.13529 7.22522 7.45252 7.59333 7.70262 7.94814 8.41080 8.63215 8.85047 9.36946 10.85597 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.003419 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.327227 B = 8188.622683 C = 8984.404339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.268 3.732 4 H 0.061 0.939 5 C -0.542 4.542 6 H 0.063 0.937 7 C 0.071 3.929 8 N -0.878 5.878 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.696 5.696 14 C 0.564 3.436 15 O -0.524 6.524 16 C -0.196 4.196 17 C -0.105 4.105 18 C -0.009 4.009 19 C -0.820 4.820 20 S 2.529 3.471 21 C -0.648 4.648 22 O -0.931 6.931 23 O -0.932 6.932 24 S 0.312 5.688 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.386 0.614 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 3.295 18.360 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.079 0.921 5 C -0.580 4.580 6 H 0.081 0.919 7 C -0.133 4.133 8 N -0.514 5.514 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.344 5.344 14 C 0.347 3.653 15 O -0.403 6.403 16 C -0.319 4.319 17 C -0.137 4.137 18 C -0.045 4.045 19 C -1.022 5.022 20 S 2.705 3.295 21 C -0.799 4.799 22 O -0.929 6.929 23 O -0.929 6.929 24 S 0.583 5.417 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.219 0.781 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.090 3.474 18.060 19.710 hybrid contribution -0.535 -0.418 -0.470 0.826 sum -7.625 3.055 17.590 19.413 Atomic orbital electron populations 1.21865 0.97998 0.98431 1.01474 1.21872 0.92996 0.99585 1.01503 1.18935 0.94783 0.89025 0.80558 0.92134 1.21140 0.90239 1.44581 1.02084 0.91928 1.24873 0.98654 0.94921 0.94852 1.69970 1.35917 1.43403 1.02156 0.86500 0.84707 0.78807 0.77369 1.20328 1.21101 1.19786 1.46527 1.13710 1.55164 1.18977 1.16969 0.83504 0.79557 0.85254 1.90832 1.51520 1.59585 1.38348 1.25875 0.99642 1.06156 1.00263 1.20940 0.97375 0.98098 0.97301 1.19767 0.97211 0.95191 0.92358 1.34922 1.09111 1.27634 1.30520 1.04538 0.75092 0.76161 0.73745 1.30224 1.14015 1.20282 1.15356 1.93582 1.66878 1.46782 1.85621 1.93615 1.29636 1.84795 1.84836 1.83048 1.12236 1.44998 1.01457 0.92804 0.95496 0.94196 0.89877 0.94505 0.92407 0.78093 0.82095 0.82537 0.84737 0.84735 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.12 -2.76 5.50 -26.73 -0.15 -2.91 16 3 C 0.27 6.49 2.11 -69.08 -0.15 6.35 16 4 H 0.06 1.71 7.52 -51.93 -0.39 1.32 16 5 C -0.54 -13.91 8.66 -34.44 -0.30 -14.21 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -24.16 12.16 55.43 0.67 -23.49 16 9 Si 0.90 20.15 29.55 -169.99 -5.02 15.13 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -14.03 5.02 -56.27 -0.28 -14.31 16 14 C 0.56 10.94 6.34 -12.90 -0.08 10.86 16 15 O -0.52 -11.73 13.97 5.19 0.07 -11.66 16 16 C -0.20 -2.98 6.45 -36.79 -0.24 -3.22 16 17 C -0.10 -1.37 10.01 -40.44 -0.40 -1.77 16 18 C -0.01 -0.09 9.71 -41.41 -0.40 -0.49 16 19 C -0.82 -8.76 6.01 29.18 0.18 -8.59 16 20 S 2.53 22.08 5.92 -107.50 -0.64 21.45 16 21 C -0.65 -2.72 10.80 101.05 1.09 -1.63 16 22 O -0.93 -10.68 17.59 -57.54 -1.01 -11.70 16 23 O -0.93 -11.20 17.68 -57.54 -1.02 -12.22 16 24 S 0.31 3.85 21.83 -107.50 -2.35 1.51 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 28 H 0.08 2.10 6.80 -51.93 -0.35 1.75 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 6.82 7.64 -40.82 -0.31 6.50 16 32 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 33 H 0.16 1.24 7.98 -52.49 -0.42 0.82 16 34 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 35 H 0.13 0.43 8.14 -51.92 -0.42 0.00 16 36 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -33.78 332.54 -9.04 -42.81 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.25 Total: 3.94 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -0.23 Total: -16.47 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.39 Total: -37.80 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.96 Total: -35.57 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 25.94 SS G_CDS: -2.98 Total: 22.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.78 -9.04 -42.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411987389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.685 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds