Wall clock time and date at job start Tue Mar 31 2020 12:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47469 * 2 1 4 4 H 1.09005 * 109.46957 * 304.89805 * 3 2 1 5 5 C 1.50692 * 109.47524 * 184.89890 * 3 2 1 6 6 H 1.08005 * 120.00416 * 245.45497 * 5 3 2 7 7 C 1.37881 * 120.00187 * 65.44768 * 5 3 2 8 8 N 1.31511 * 119.99916 * 9.47283 * 7 5 3 9 9 Si 1.86797 * 120.00250 * 189.46945 * 7 5 3 10 10 H 1.48507 * 109.46902 * 84.99787 * 9 7 5 11 11 H 1.48496 * 109.47210 * 204.99425 * 9 7 5 12 12 H 1.48499 * 109.47457 * 324.99733 * 9 7 5 13 13 N 1.46505 * 109.47160 * 64.89499 * 3 2 1 14 14 C 1.34771 * 120.00067 * 275.00533 * 13 3 2 15 15 O 1.21701 * 120.00304 * 359.97438 * 14 13 3 16 16 C 1.46586 * 120.00135 * 180.02562 * 14 13 3 17 17 C 1.36642 * 125.46122 * 180.02562 * 16 14 13 18 18 C 1.37476 * 113.29822 * 179.71606 * 17 16 14 19 19 C 1.33814 * 115.09712 * 0.48541 * 18 17 16 20 20 S 1.76200 * 124.51974 * 179.78639 * 19 18 17 21 21 C 1.81402 * 104.44891 * 89.72934 * 20 19 18 22 22 O 1.42099 * 104.27669 * 333.65626 * 20 19 18 23 23 O 1.42108 * 104.27671 * 205.79924 * 20 19 18 24 24 S 1.70615 * 110.95765 * 359.52886 * 19 18 17 25 25 H 1.09003 * 109.46656 * 60.00403 * 1 2 3 26 26 H 1.09003 * 109.47065 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47209 * 300.00375 * 1 2 3 28 28 H 1.09001 * 109.47209 * 239.99625 * 2 1 3 29 29 H 1.09006 * 109.46913 * 120.00044 * 2 1 3 30 30 H 0.96991 * 120.00522 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99782 * 95.00394 * 13 3 2 32 32 H 1.08007 * 123.34802 * 359.93961 * 17 16 14 33 33 H 1.07996 * 122.44799 * 180.27309 * 18 17 16 34 34 H 1.09005 * 109.47052 * 299.99981 * 21 20 19 35 35 H 1.09003 * 109.46940 * 59.99726 * 21 20 19 36 36 H 1.09000 * 109.47328 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1213 6 1 4.1494 1.8090 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7113 -2.3325 9 14 5.9920 0.7327 -1.3288 10 1 6.3290 -0.6068 -0.7833 11 1 6.4619 0.8273 -2.7342 12 1 6.6563 1.7808 -0.5131 13 7 1.6504 2.0983 1.2508 14 6 0.4329 2.6652 1.3635 15 8 -0.3426 2.6328 0.4262 16 6 0.0432 3.3218 2.6148 17 6 -1.1578 3.9293 2.8506 18 6 -1.2597 4.4602 4.1146 19 6 -0.1770 4.3033 4.8851 20 16 -0.0361 4.8898 6.5406 21 6 -0.6511 3.5208 7.5597 22 8 -0.9283 5.9943 6.5983 23 8 1.3610 5.0657 6.7324 24 16 1.0462 3.4534 4.0530 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8313 0.3851 -3.1429 31 1 2.2686 2.1244 1.9978 32 1 -1.9497 3.9835 2.1181 33 1 -2.1474 4.9698 4.4592 34 1 -1.6851 3.3042 7.2913 35 1 -0.0380 2.6361 7.3878 36 1 -0.6000 3.7999 8.6121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411987389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:31 Heat of formation + Delta-G solvation = -103.431927 kcal Electronic energy + Delta-G solvation = -21831.545220 eV Core-core repulsion = 18340.837894 eV Total energy + Delta-G solvation = -3490.707326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95352 -38.81955 -38.08859 -37.03873 -36.93027 -34.41675 -33.14251 -31.21245 -30.23749 -29.02393 -26.48483 -24.95969 -22.98886 -21.53215 -21.29373 -20.47600 -19.43789 -18.39346 -17.64083 -17.28687 -17.17619 -16.93707 -16.46425 -16.41972 -16.05372 -15.30691 -14.72534 -14.60745 -14.42746 -14.00822 -13.92255 -13.78107 -13.59125 -13.47877 -13.31535 -13.17346 -13.09498 -12.96233 -12.65026 -12.60904 -12.24799 -12.12926 -12.11521 -11.89486 -11.67332 -11.15846 -11.03857 -10.56790 -10.40655 -9.83363 -9.71587 -8.22773 -6.36343 -1.07761 -0.84294 0.22789 0.58284 1.10161 1.44564 1.45066 1.54718 1.81253 2.11475 2.24325 2.47018 2.92534 3.09340 3.28373 3.77222 4.07419 4.13406 4.17377 4.35391 4.42930 4.49558 4.62691 4.66768 4.87041 4.99143 5.01847 5.15017 5.19903 5.35502 5.39483 5.55149 5.69227 5.79882 6.00407 6.68315 6.74710 7.20114 7.37141 8.85892 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.003419 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.327227 B = 8188.622683 C = 8984.404339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.009 0.991 5 C -0.556 4.556 6 H 0.071 0.929 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.698 5.698 14 C 0.566 3.434 15 O -0.564 6.564 16 C -0.241 4.241 17 C -0.090 4.090 18 C -0.011 4.011 19 C -0.804 4.804 20 S 2.529 3.471 21 C -0.619 4.619 22 O -0.961 6.961 23 O -0.970 6.970 24 S 0.326 5.674 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.266 0.734 31 H 0.399 0.601 32 H 0.163 0.837 33 H 0.189 0.811 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 2.941 21.714 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.593 4.593 6 H 0.089 0.911 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.346 5.346 14 C 0.352 3.648 15 O -0.446 6.446 16 C -0.364 4.364 17 C -0.124 4.124 18 C -0.047 4.047 19 C -1.004 5.004 20 S 2.707 3.293 21 C -0.774 4.774 22 O -0.959 6.959 23 O -0.967 6.967 24 S 0.598 5.402 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.234 0.766 32 H 0.181 0.819 33 H 0.206 0.794 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.318 3.155 21.407 22.842 hybrid contribution -0.551 -0.246 -1.352 1.481 sum -7.869 2.909 20.054 21.739 Atomic orbital electron populations 1.21708 0.96563 0.99684 1.00478 1.21716 0.94206 0.98539 1.00764 1.18521 0.94068 0.89360 0.80763 0.97265 1.21505 0.91116 1.44326 1.02402 0.91053 1.25726 1.03162 0.94574 0.94437 1.70112 1.37841 1.44391 1.02747 0.85446 0.79168 0.79127 0.77169 1.19333 1.21331 1.18966 1.46264 1.14664 1.55561 1.18100 1.17403 0.82480 0.78627 0.86287 1.90799 1.52443 1.61011 1.40360 1.25391 1.01721 1.09249 1.00006 1.21183 0.96438 0.96542 0.98266 1.19994 0.98448 0.95100 0.91109 1.35396 1.08081 1.25309 1.31591 1.04629 0.74070 0.77309 0.73281 1.30037 1.15377 1.17159 1.14851 1.93546 1.66966 1.49732 1.85614 1.93572 1.32102 1.86190 1.84867 1.82959 1.12129 1.45148 0.99996 0.95304 0.92937 0.93672 0.92565 0.93013 0.92466 0.76631 0.81943 0.79393 0.82186 0.82877 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.51 71.98 0.61 -4.84 16 2 C -0.11 -5.33 5.50 30.59 0.17 -5.16 16 3 C 0.28 13.90 2.11 44.24 0.09 13.99 16 4 H 0.01 0.57 7.52 -2.38 -0.02 0.55 16 5 C -0.56 -29.04 8.66 25.60 0.22 -28.82 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 1.18 5.16 84.66 0.44 1.61 16 8 N -0.91 -52.00 12.16 21.45 0.26 -51.74 16 9 Si 0.97 41.54 29.55 68.60 2.03 43.56 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 N -0.70 -28.88 5.02 -450.17 -2.26 -31.14 16 14 C 0.57 22.64 6.34 86.42 0.55 23.18 16 15 O -0.56 -26.52 13.97 -4.35 -0.06 -26.58 16 16 C -0.24 -7.30 6.45 24.08 0.16 -7.14 16 17 C -0.09 -2.27 10.01 21.72 0.22 -2.05 16 18 C -0.01 -0.21 9.71 21.08 0.20 -0.01 16 19 C -0.80 -15.28 6.01 66.81 0.40 -14.88 16 20 S 2.53 37.18 5.92 -56.49 -0.33 36.85 16 21 C -0.62 -1.96 10.80 113.37 1.22 -0.73 16 22 O -0.96 -19.79 17.59 -127.65 -2.24 -22.03 16 23 O -0.97 -21.66 17.68 -127.65 -2.26 -23.92 16 24 S 0.33 7.64 21.83 -56.49 -1.23 6.41 16 25 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.86 5.65 -2.39 -0.01 1.85 16 28 H 0.06 2.94 6.80 -2.39 -0.02 2.93 16 29 H 0.05 2.23 8.14 -2.38 -0.02 2.22 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.40 14.23 7.64 -92.71 -0.71 13.52 16 32 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.19 2.33 7.98 -2.91 -0.02 2.31 16 34 H 0.16 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.16 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -76.91 332.54 -1.41 -78.32 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.41 Total: 15.12 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 4.28 Total: -24.84 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.00 Total: -82.88 kcal Atomic # 8 Polarization: -67.97 SS G_CDS: -4.56 Total: -72.53 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 44.82 SS G_CDS: -1.57 Total: 43.25 kcal Total: -76.91 -1.41 -78.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411987389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.112 kcal (2) G-P(sol) polarization free energy of solvation -76.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds