Wall clock time and date at job start Tue Mar 31 2020 11:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46994 * 2 1 4 4 C 1.50698 * 109.47265 * 119.99978 * 2 1 3 5 5 H 1.07999 * 120.00079 * 120.00357 * 4 2 1 6 6 C 1.37878 * 120.00038 * 300.00087 * 4 2 1 7 7 N 1.31514 * 119.99830 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46987 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46793 * 120.00232 * 8 6 4 11 11 H 1.48499 * 109.47131 * 239.99861 * 8 6 4 12 12 N 1.46896 * 109.47120 * 240.00132 * 2 1 3 13 13 C 1.46902 * 111.00038 * 84.99699 * 12 2 1 14 14 H 1.09003 * 109.47028 * 35.00458 * 13 12 2 15 15 C 1.50694 * 109.47449 * 275.00141 * 13 12 2 16 16 O 1.20830 * 119.99855 * 0.02562 * 15 13 12 17 17 O 1.34226 * 120.00509 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.47120 * 155.00052 * 13 12 2 19 19 C 1.38224 * 119.98753 * 220.00449 * 18 13 12 20 20 C 1.38354 * 120.01166 * 180.27970 * 19 18 13 21 21 Cl 1.73599 * 120.00668 * 179.74676 * 20 19 18 22 22 C 1.38338 * 119.98864 * 359.48316 * 20 19 18 23 23 C 1.38327 * 119.97226 * 0.51610 * 22 20 19 24 24 Cl 1.73597 * 120.00874 * 179.76851 * 23 22 20 25 25 C 1.38224 * 119.98823 * 40.02020 * 18 13 12 26 26 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46856 * 300.00253 * 1 2 3 28 28 H 1.08994 * 109.47242 * 59.99652 * 1 2 3 29 29 H 0.97008 * 120.00005 * 179.97438 * 7 6 4 30 30 H 1.00907 * 110.99987 * 321.04818 * 12 2 1 31 31 H 0.96695 * 117.00508 * 179.97438 * 17 15 13 32 32 H 1.08002 * 119.99032 * 359.97438 * 19 18 13 33 33 H 1.07997 * 120.01377 * 180.28415 * 22 20 19 34 34 H 1.08004 * 119.98803 * 0.02562 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0080 9 1 3.1455 -2.2877 3.6037 10 1 3.1466 -0.1873 4.8165 11 1 1.1662 -1.5867 4.8161 12 7 2.0197 -0.6924 -1.1994 13 6 2.0824 0.2227 -2.3469 14 1 2.3649 1.2177 -2.0030 15 6 0.7324 0.2859 -3.0134 16 8 -0.1879 -0.3643 -2.5770 17 8 0.5520 1.0644 -4.0919 18 6 3.1065 -0.2775 -3.3329 19 6 3.9415 0.6172 -3.9754 20 6 4.8779 0.1591 -4.8850 21 17 5.9221 1.2836 -5.6968 22 6 4.9857 -1.1956 -5.1435 23 6 4.1499 -2.0905 -4.5002 24 17 4.2803 -3.7902 -4.8283 25 6 3.2102 -1.6308 -3.5946 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.7081 1.1608 3.4844 30 1 1.4495 -1.4979 -1.4101 31 1 -0.3313 1.0720 -4.4852 32 1 3.8595 1.6745 -3.7710 33 1 5.7197 -1.5540 -5.8500 34 1 2.5570 -2.3293 -3.0927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:25 Heat of formation + Delta-G solvation = -73.023818 kcal Electronic energy + Delta-G solvation = -21910.092632 eV Core-core repulsion = 18280.783393 eV Total energy + Delta-G solvation = -3629.309239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59343 -39.30194 -36.86256 -36.77380 -36.29307 -35.33537 -33.22176 -31.34691 -30.72640 -28.57827 -25.93041 -25.09275 -22.91044 -22.81163 -20.90620 -20.13695 -18.02017 -17.53213 -16.92385 -16.20492 -16.04014 -15.71167 -15.37558 -14.67900 -14.42613 -14.19226 -13.92694 -13.44102 -12.98055 -12.68293 -12.44511 -12.18223 -12.04656 -11.95193 -11.60389 -11.38342 -11.25302 -11.17080 -11.04759 -10.95951 -10.79546 -10.56516 -10.37918 -10.00971 -9.98443 -9.02027 -8.90177 -8.80449 -8.39771 -7.75595 -6.03575 -4.07592 0.91605 0.93267 1.69317 2.16887 2.38009 3.12032 3.29949 3.37814 3.42244 3.47664 4.36943 4.44464 4.79695 4.86169 4.95942 5.10818 5.20101 5.28796 5.34368 5.51991 5.58744 5.90727 5.98260 6.28781 6.40304 6.59366 6.69284 6.97919 7.04665 7.19072 7.71434 7.76223 8.00303 8.13393 8.27897 8.43542 8.98076 9.57498 11.03275 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.003969 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.128437 B = 7053.723285 C = 7405.401477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.207 3.793 3 H 0.036 0.964 4 C -0.497 4.497 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.646 5.646 13 C 0.137 3.863 14 H 0.125 0.875 15 C 0.445 3.555 16 O -0.491 6.491 17 O -0.519 6.519 18 C -0.035 4.035 19 C -0.086 4.086 20 C -0.025 4.025 21 Cl -0.063 7.063 22 C -0.105 4.105 23 C -0.025 4.025 24 Cl -0.062 7.062 25 C -0.077 4.077 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.020 0.980 29 H 0.260 0.740 30 H 0.343 0.657 31 H 0.401 0.599 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 -0.773 -17.659 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.277 5.277 13 C 0.024 3.976 14 H 0.143 0.857 15 C 0.284 3.716 16 O -0.377 6.377 17 O -0.330 6.330 18 C -0.036 4.036 19 C -0.105 4.105 20 C -0.052 4.052 21 Cl -0.034 7.034 22 C -0.125 4.125 23 C -0.052 4.052 24 Cl -0.033 7.033 25 C -0.096 4.096 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.259 0.741 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.325 -0.836 -17.122 18.272 hybrid contribution -1.222 -0.340 0.389 1.327 sum 5.103 -1.176 -16.733 17.533 Atomic orbital electron populations 1.22555 0.99308 1.00006 1.00760 1.19416 0.90708 0.94162 0.85646 0.94662 1.21077 1.30561 1.12674 0.89258 0.91694 1.24925 0.95175 0.95164 0.99071 1.69901 1.36989 1.23145 1.23380 0.86425 0.78507 0.79662 0.82718 1.19669 1.21101 1.21180 1.61335 1.57267 1.07905 1.01210 1.20454 0.85927 1.00969 0.90286 0.85710 1.25050 0.92831 0.76020 0.77689 1.90753 1.43538 1.41958 1.61472 1.84607 1.40065 1.64640 1.43649 1.19365 0.96242 0.92479 0.95528 1.21002 0.93756 1.00996 0.94774 1.20573 0.96013 0.90121 0.98470 1.98376 1.65648 1.61163 1.78221 1.20826 0.99954 0.90661 1.01030 1.20640 0.99163 0.85375 1.00000 1.98380 1.97517 1.12777 1.94593 1.21022 0.97431 0.95856 0.95299 0.95091 0.89860 0.96119 0.93034 0.83702 0.74121 0.83949 0.84077 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 7.78 37.16 0.29 -3.75 16 2 C 0.21 4.96 2.57 -68.87 -0.18 4.78 16 3 H 0.04 0.90 7.43 -51.93 -0.39 0.52 16 4 C -0.50 -13.28 8.84 -34.44 -0.30 -13.58 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.65 -12.65 5.46 -103.40 -0.56 -13.21 16 13 C 0.14 2.20 2.70 -70.02 -0.19 2.01 16 14 H 0.13 1.97 7.29 -51.93 -0.38 1.59 16 15 C 0.44 6.97 6.89 36.00 0.25 7.22 16 16 O -0.49 -9.09 13.17 -18.75 -0.25 -9.33 16 17 O -0.52 -6.35 13.34 -39.25 -0.52 -6.87 16 18 C -0.03 -0.48 4.88 -104.63 -0.51 -0.99 16 19 C -0.09 -1.06 9.45 -39.54 -0.37 -1.43 16 20 C -0.02 -0.29 6.32 -39.50 -0.25 -0.53 16 21 Cl -0.06 -0.65 28.96 -51.86 -1.50 -2.15 16 22 C -0.11 -1.18 9.62 -39.51 -0.38 -1.56 16 23 C -0.02 -0.30 6.32 -39.50 -0.25 -0.55 16 24 Cl -0.06 -0.70 28.96 -51.86 -1.50 -2.20 16 25 C -0.08 -1.05 9.10 -39.54 -0.36 -1.41 16 26 H 0.03 0.75 8.13 -51.93 -0.42 0.32 16 27 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 28 H 0.02 0.46 5.07 -51.93 -0.26 0.20 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.34 6.71 6.86 -39.29 -0.27 6.44 16 31 H 0.40 3.28 9.10 45.56 0.41 3.69 16 32 H 0.14 1.54 8.04 -52.49 -0.42 1.12 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.98 7.25 -52.48 -0.38 1.60 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -29.22 321.24 -8.63 -37.85 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -2.39 Total: 7.71 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.35 Total: -8.33 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.06 Total: -37.66 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.77 Total: -16.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -3.00 Total: -4.35 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.22 -8.63 -37.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.171 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds