Wall clock time and date at job start Tue Mar 31 2020 11:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46994 * 2 1 4 4 C 1.50698 * 109.47265 * 119.99978 * 2 1 3 5 5 H 1.07999 * 120.00079 * 120.00357 * 4 2 1 6 6 C 1.37878 * 120.00038 * 300.00087 * 4 2 1 7 7 N 1.31514 * 119.99830 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46987 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46793 * 120.00232 * 8 6 4 11 11 H 1.48499 * 109.47131 * 239.99861 * 8 6 4 12 12 N 1.46896 * 109.47120 * 240.00132 * 2 1 3 13 13 C 1.46902 * 111.00038 * 84.99699 * 12 2 1 14 14 H 1.09003 * 109.47028 * 35.00458 * 13 12 2 15 15 C 1.50694 * 109.47449 * 275.00141 * 13 12 2 16 16 O 1.20830 * 119.99855 * 0.02562 * 15 13 12 17 17 O 1.34226 * 120.00509 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.47120 * 155.00052 * 13 12 2 19 19 C 1.38224 * 119.98753 * 220.00449 * 18 13 12 20 20 C 1.38354 * 120.01166 * 180.27970 * 19 18 13 21 21 Cl 1.73599 * 120.00668 * 179.74676 * 20 19 18 22 22 C 1.38338 * 119.98864 * 359.48316 * 20 19 18 23 23 C 1.38327 * 119.97226 * 0.51610 * 22 20 19 24 24 Cl 1.73597 * 120.00874 * 179.76851 * 23 22 20 25 25 C 1.38224 * 119.98823 * 40.02020 * 18 13 12 26 26 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46856 * 300.00253 * 1 2 3 28 28 H 1.08994 * 109.47242 * 59.99652 * 1 2 3 29 29 H 0.97008 * 120.00005 * 179.97438 * 7 6 4 30 30 H 1.00907 * 110.99987 * 321.04818 * 12 2 1 31 31 H 0.96695 * 117.00508 * 179.97438 * 17 15 13 32 32 H 1.08002 * 119.99032 * 359.97438 * 19 18 13 33 33 H 1.07997 * 120.01377 * 180.28415 * 22 20 19 34 34 H 1.08004 * 119.98803 * 0.02562 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0080 9 1 3.1455 -2.2877 3.6037 10 1 3.1466 -0.1873 4.8165 11 1 1.1662 -1.5867 4.8161 12 7 2.0197 -0.6924 -1.1994 13 6 2.0824 0.2227 -2.3469 14 1 2.3649 1.2177 -2.0030 15 6 0.7324 0.2859 -3.0134 16 8 -0.1879 -0.3643 -2.5770 17 8 0.5520 1.0644 -4.0919 18 6 3.1065 -0.2775 -3.3329 19 6 3.9415 0.6172 -3.9754 20 6 4.8779 0.1591 -4.8850 21 17 5.9221 1.2836 -5.6968 22 6 4.9857 -1.1956 -5.1435 23 6 4.1499 -2.0905 -4.5002 24 17 4.2803 -3.7902 -4.8283 25 6 3.2102 -1.6308 -3.5946 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.7081 1.1608 3.4844 30 1 1.4495 -1.4979 -1.4101 31 1 -0.3313 1.0720 -4.4852 32 1 3.8595 1.6745 -3.7710 33 1 5.7197 -1.5540 -5.8500 34 1 2.5570 -2.3293 -3.0927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:24 Heat of formation + Delta-G solvation = -90.803747 kcal Electronic energy + Delta-G solvation = -21910.863627 eV Core-core repulsion = 18280.783393 eV Total energy + Delta-G solvation = -3630.080235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82485 -40.33534 -38.08342 -37.74449 -37.32040 -36.73012 -34.89524 -32.87190 -31.70851 -30.07288 -27.44342 -27.08137 -23.92200 -23.89241 -22.46291 -21.60238 -19.19003 -18.88018 -18.28524 -17.69652 -17.30598 -16.82816 -16.63325 -16.36615 -15.53998 -15.38196 -15.04507 -14.85471 -14.45393 -14.19925 -13.77539 -13.48365 -13.32824 -13.05608 -12.99356 -12.87017 -12.68812 -12.62963 -12.33825 -12.29734 -12.06858 -11.98519 -11.94154 -11.86309 -11.60054 -10.92479 -10.46108 -9.91210 -9.75437 -9.39389 -8.09601 -6.20095 -0.05666 -0.04065 0.77453 1.12884 1.25458 1.43414 1.45871 1.57477 2.02067 2.39164 2.48511 3.19916 3.26891 3.51201 3.90639 3.93030 4.00570 4.12442 4.34863 4.39172 4.47967 4.74551 4.95062 4.99908 5.03258 5.09766 5.23234 5.35020 5.42681 5.55608 5.70433 5.80033 6.19425 6.45023 6.54096 6.90949 6.96786 7.48754 8.96251 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.003969 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.128437 B = 7053.723285 C = 7405.401477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.215 3.785 3 H 0.016 0.984 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.646 5.646 13 C 0.137 3.863 14 H 0.127 0.873 15 C 0.455 3.545 16 O -0.525 6.525 17 O -0.505 6.505 18 C -0.045 4.045 19 C -0.085 4.085 20 C -0.025 4.025 21 Cl -0.048 7.048 22 C -0.096 4.096 23 C -0.028 4.028 24 Cl -0.055 7.055 25 C -0.088 4.088 26 H 0.020 0.980 27 H 0.054 0.946 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.342 0.658 31 H 0.423 0.577 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 -0.794 -19.001 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.107 3.893 3 H 0.034 0.966 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.277 5.277 13 C 0.023 3.977 14 H 0.144 0.856 15 C 0.296 3.704 16 O -0.414 6.414 17 O -0.317 6.317 18 C -0.047 4.047 19 C -0.104 4.104 20 C -0.052 4.052 21 Cl -0.019 7.019 22 C -0.115 4.115 23 C -0.055 4.055 24 Cl -0.026 7.026 25 C -0.107 4.107 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.284 0.716 32 H 0.173 0.827 33 H 0.181 0.819 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.496 -0.844 -18.508 19.987 hybrid contribution -1.554 -0.291 0.646 1.708 sum 5.942 -1.135 -17.863 18.859 Atomic orbital electron populations 1.22360 0.99602 0.98960 0.99962 1.19123 0.90222 0.93095 0.86842 0.96596 1.21384 1.30463 1.12594 0.90703 0.92401 1.25661 0.95391 0.95841 1.01791 1.70018 1.37864 1.24263 1.23932 0.85486 0.77960 0.78684 0.79350 1.19252 1.20634 1.20999 1.61132 1.56890 1.08255 1.01445 1.20382 0.87068 1.00345 0.89858 0.85587 1.24766 0.92083 0.75609 0.77989 1.90742 1.44374 1.43497 1.62776 1.84530 1.41812 1.63134 1.42211 1.19122 0.96617 0.92912 0.96000 1.21117 0.93323 1.01434 0.94509 1.20612 0.95874 0.90543 0.98182 1.98386 1.65064 1.60670 1.77813 1.21070 0.99556 0.90375 1.00544 1.20659 0.99060 0.85967 0.99860 1.98382 1.97467 1.12246 1.94495 1.20996 0.98027 0.95698 0.95986 0.96121 0.92715 0.94707 0.93022 0.83813 0.71614 0.82653 0.81948 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.38 7.78 71.98 0.56 -6.82 16 2 C 0.22 10.48 2.57 44.17 0.11 10.59 16 3 H 0.02 0.84 7.43 -2.39 -0.02 0.83 16 4 C -0.51 -27.78 8.84 25.60 0.23 -27.55 16 5 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -52.35 11.32 21.45 0.24 -52.11 16 8 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 N -0.65 -25.60 5.46 -481.04 -2.63 -28.23 16 13 C 0.14 4.33 2.70 43.42 0.12 4.44 16 14 H 0.13 3.94 7.29 -2.39 -0.02 3.93 16 15 C 0.45 13.89 6.89 71.23 0.49 14.38 16 16 O -0.52 -19.29 13.17 21.95 0.29 -19.00 16 17 O -0.50 -11.34 13.34 -51.37 -0.69 -12.03 16 18 C -0.05 -1.20 4.88 -19.87 -0.10 -1.30 16 19 C -0.08 -1.92 9.45 22.29 0.21 -1.71 16 20 C -0.03 -0.52 6.32 22.32 0.14 -0.37 16 21 Cl -0.05 -0.87 28.96 -2.72 -0.08 -0.95 16 22 C -0.10 -1.92 9.62 22.31 0.21 -1.70 16 23 C -0.03 -0.65 6.32 22.32 0.14 -0.51 16 24 Cl -0.05 -1.17 28.96 -2.72 -0.08 -1.25 16 25 C -0.09 -2.32 9.10 22.30 0.20 -2.12 16 26 H 0.02 1.00 8.13 -2.39 -0.02 0.98 16 27 H 0.05 3.00 6.07 -2.39 -0.01 2.99 16 28 H 0.03 1.58 5.07 -2.39 -0.01 1.57 16 29 H 0.26 14.13 8.31 -92.70 -0.77 13.35 16 30 H 0.34 13.62 6.86 -89.69 -0.62 13.01 16 31 H 0.42 5.90 9.10 -74.06 -0.67 5.22 16 32 H 0.16 3.04 8.04 -2.91 -0.02 3.02 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.13 3.71 7.25 -2.91 -0.02 3.69 16 Total: -1.00 -62.12 321.24 1.75 -60.37 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.11 Total: 19.18 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 2.77 Total: -11.60 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.38 Total: -80.34 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.40 Total: -31.03 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.16 Total: -2.20 kcal Total: -62.12 1.75 -60.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.431 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds