Wall clock time and date at job start Tue Mar 31 2020 11:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47389 * 2 1 4 4 C 1.50698 * 109.47275 * 240.00207 * 2 1 3 5 5 H 1.07999 * 119.99734 * 245.46282 * 4 2 1 6 6 C 1.37875 * 120.00438 * 65.45464 * 4 2 1 7 7 N 1.31520 * 119.99876 * 9.55669 * 6 4 2 8 8 Si 1.86796 * 120.00277 * 189.55590 * 6 4 2 9 9 H 1.48501 * 109.47174 * 84.99662 * 8 6 4 10 10 H 1.48506 * 109.47061 * 204.99580 * 8 6 4 11 11 H 1.48497 * 109.47321 * 324.99371 * 8 6 4 12 12 N 1.46899 * 109.47445 * 119.99935 * 2 1 3 13 13 C 1.46906 * 110.99986 * 275.00113 * 12 2 1 14 14 H 1.09004 * 109.47055 * 34.99344 * 13 12 2 15 15 C 1.50706 * 109.46824 * 274.99730 * 13 12 2 16 16 O 1.20821 * 119.99799 * 0.02562 * 15 13 12 17 17 O 1.34227 * 119.99643 * 179.72281 * 15 13 12 18 18 C 1.50697 * 109.47271 * 154.99886 * 13 12 2 19 19 C 1.38222 * 119.98773 * 39.72273 * 18 13 12 20 20 C 1.38359 * 120.01462 * 179.72968 * 19 18 13 21 21 Cl 1.73598 * 120.00769 * 180.27474 * 20 19 18 22 22 C 1.38329 * 119.98382 * 0.52042 * 20 19 18 23 23 C 1.38330 * 119.97370 * 359.75678 * 22 20 19 24 24 Cl 1.73603 * 120.00630 * 180.02562 * 23 22 20 25 25 C 1.38215 * 119.98554 * 220.00070 * 18 13 12 26 26 H 1.08997 * 109.46991 * 63.67410 * 1 2 3 27 27 H 1.08991 * 109.47359 * 183.68115 * 1 2 3 28 28 H 1.09006 * 109.46744 * 303.68142 * 1 2 3 29 29 H 0.96996 * 119.99769 * 180.02562 * 7 6 4 30 30 H 1.00898 * 111.00026 * 38.95095 * 12 2 1 31 31 H 0.96699 * 116.99648 * 180.27862 * 17 15 13 32 32 H 1.08001 * 119.99138 * 0.02562 * 19 18 13 33 33 H 1.07999 * 120.01707 * 179.76857 * 22 20 19 34 34 H 1.07998 * 119.99641 * 359.97438 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6370 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5936 8 14 2.1761 -1.1780 -4.0101 9 1 1.0242 -2.0611 -4.3241 10 1 2.4227 -0.2613 -5.1521 11 1 3.3847 -2.0071 -3.7710 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2227 2.3469 14 1 1.2577 0.9331 2.2906 15 6 3.3912 0.9696 2.3227 16 8 4.1894 0.7612 1.4399 17 8 3.6675 1.8706 3.2784 18 6 1.9787 -0.5675 3.6259 19 6 2.6284 -1.7820 3.7423 20 6 2.5380 -2.5053 4.9183 21 17 3.3599 -4.0272 5.0668 22 6 1.7885 -2.0178 5.9739 23 6 1.1339 -0.8051 5.8547 24 17 0.1936 -0.1922 7.1791 25 6 1.2292 -0.0802 4.6800 26 1 -0.3633 0.4557 -0.9211 27 1 -0.3633 -1.0254 0.0660 28 1 -0.3633 0.5700 0.8552 29 1 1.1315 1.4103 -3.4724 30 1 1.4496 -1.4979 1.4101 31 1 4.5176 2.3274 3.2185 32 1 3.2105 -2.1641 2.9168 33 1 1.7146 -2.5838 6.8907 34 1 0.7185 0.8668 4.5871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:27 Heat of formation + Delta-G solvation = -75.109066 kcal Electronic energy + Delta-G solvation = -21848.952644 eV Core-core repulsion = 18219.552982 eV Total energy + Delta-G solvation = -3629.399662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36920 -39.22741 -36.93029 -36.80302 -36.11561 -35.36136 -33.17726 -31.35439 -30.81018 -28.63892 -26.07559 -25.08044 -22.97312 -22.84256 -20.88691 -20.06137 -17.97416 -17.35890 -16.53871 -16.20471 -15.99647 -15.56159 -15.11597 -14.69346 -14.47280 -14.27584 -14.06391 -13.49516 -12.97912 -12.72894 -12.51120 -12.28667 -12.08757 -11.94032 -11.75380 -11.27559 -11.24187 -11.11280 -11.10170 -11.01640 -10.84575 -10.59838 -10.29018 -10.14021 -9.88502 -9.18290 -8.97412 -8.89183 -8.34332 -7.61980 -6.02015 -4.00363 0.80428 0.83137 1.62297 2.09865 2.68194 3.12642 3.34275 3.40045 3.41232 3.46038 4.32338 4.44804 4.73345 4.82236 4.88815 5.04347 5.25171 5.29201 5.33220 5.51921 5.69060 5.82024 5.91468 6.17909 6.34099 6.47803 6.61767 6.84117 6.87917 7.06442 7.46806 7.80126 8.06896 8.26187 8.36857 8.48638 9.03696 9.62243 11.07958 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003885 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.322127 B = 7205.299297 C = 7800.534415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.213 3.787 3 H 0.043 0.957 4 C -0.491 4.491 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.658 5.658 13 C 0.143 3.857 14 H 0.088 0.912 15 C 0.474 3.526 16 O -0.465 6.465 17 O -0.527 6.527 18 C -0.059 4.059 19 C -0.080 4.080 20 C -0.026 4.026 21 Cl -0.058 7.058 22 C -0.102 4.102 23 C -0.026 4.026 24 Cl -0.061 7.061 25 C -0.085 4.085 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.010 0.990 29 H 0.260 0.740 30 H 0.342 0.658 31 H 0.404 0.596 32 H 0.155 0.845 33 H 0.143 0.857 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 -2.852 19.193 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.529 4.529 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.292 5.292 13 C 0.031 3.969 14 H 0.106 0.894 15 C 0.312 3.688 16 O -0.348 6.348 17 O -0.339 6.339 18 C -0.060 4.060 19 C -0.099 4.099 20 C -0.053 4.053 21 Cl -0.029 7.029 22 C -0.121 4.121 23 C -0.053 4.053 24 Cl -0.032 7.032 25 C -0.104 4.104 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.262 0.738 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.035 -2.996 18.754 18.992 hybrid contribution -0.267 -0.058 -0.618 0.675 sum -0.302 -3.054 18.136 18.394 Atomic orbital electron populations 1.22439 1.00685 0.98917 1.00559 1.19299 0.89069 0.95149 0.85902 0.93942 1.20956 1.34513 1.08251 0.89211 0.91752 1.24911 0.95586 0.94744 0.99014 1.69958 1.45791 1.14023 1.23757 0.86550 0.78693 0.79976 0.82437 1.20738 1.21488 1.19864 1.60558 1.58910 1.08139 1.01545 1.19777 0.92531 0.94814 0.89814 0.89440 1.23316 0.89200 0.77588 0.78709 1.90779 1.47684 1.61949 1.34366 1.84512 1.43937 1.53175 1.52322 1.19549 0.97147 0.94631 0.94687 1.21248 0.98377 0.93456 0.96807 1.20687 0.99192 0.89837 0.95543 1.98388 1.77365 1.29170 1.97979 1.20876 0.97018 0.95101 0.99155 1.20597 0.98806 0.95442 0.90481 1.98381 1.71232 1.87228 1.46386 1.21059 0.98397 1.00107 0.90828 0.90555 0.94728 0.97067 0.93033 0.83795 0.73809 0.82724 0.83967 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.03 37.16 0.34 -3.32 16 2 C 0.21 5.08 2.08 -68.87 -0.14 4.94 16 3 H 0.04 1.16 7.58 -51.93 -0.39 0.76 16 4 C -0.49 -13.34 8.76 -34.44 -0.30 -13.64 16 5 H 0.06 1.78 7.83 -52.49 -0.41 1.36 16 6 C 0.06 1.61 5.17 -17.82 -0.09 1.52 16 7 N -0.90 -25.57 12.16 55.43 0.67 -24.89 16 8 Si 0.90 21.51 29.55 -169.99 -5.02 16.48 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.66 -12.90 4.95 -103.39 -0.51 -13.41 16 13 C 0.14 2.34 2.55 -70.01 -0.18 2.16 16 14 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 15 C 0.47 8.32 7.35 36.01 0.26 8.58 16 16 O -0.47 -10.20 17.02 -18.75 -0.32 -10.52 16 17 O -0.53 -7.09 13.35 -39.25 -0.52 -7.61 16 18 C -0.06 -0.79 4.64 -104.64 -0.49 -1.28 16 19 C -0.08 -1.06 8.78 -39.54 -0.35 -1.40 16 20 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 21 Cl -0.06 -0.64 28.96 -51.86 -1.50 -2.14 16 22 C -0.10 -1.07 9.62 -39.51 -0.38 -1.45 16 23 C -0.03 -0.28 6.32 -39.50 -0.25 -0.53 16 24 Cl -0.06 -0.60 28.96 -51.86 -1.50 -2.10 16 25 C -0.08 -0.99 9.45 -39.54 -0.37 -1.36 16 26 H 0.08 1.89 6.83 -51.93 -0.35 1.53 16 27 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 28 H 0.01 0.20 7.47 -51.93 -0.39 -0.19 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.34 6.11 7.68 -39.29 -0.30 5.81 16 31 H 0.40 3.78 9.10 45.56 0.41 4.19 16 32 H 0.16 2.22 7.71 -52.49 -0.40 1.82 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.49 8.04 -52.49 -0.42 1.07 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -30.68 330.01 -8.53 -39.22 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -2.60 Total: 6.33 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.20 Total: -6.33 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.16 Total: -38.30 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.84 Total: -18.13 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -3.00 Total: -4.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.68 -8.53 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.892 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds