Wall clock time and date at job start Tue Mar 31 2020 11:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47389 * 2 1 4 4 C 1.50698 * 109.47275 * 240.00207 * 2 1 3 5 5 H 1.07999 * 119.99734 * 245.46282 * 4 2 1 6 6 C 1.37875 * 120.00438 * 65.45464 * 4 2 1 7 7 N 1.31520 * 119.99876 * 9.55669 * 6 4 2 8 8 Si 1.86796 * 120.00277 * 189.55590 * 6 4 2 9 9 H 1.48501 * 109.47174 * 84.99662 * 8 6 4 10 10 H 1.48506 * 109.47061 * 204.99580 * 8 6 4 11 11 H 1.48497 * 109.47321 * 324.99371 * 8 6 4 12 12 N 1.46899 * 109.47445 * 119.99935 * 2 1 3 13 13 C 1.46906 * 110.99986 * 275.00113 * 12 2 1 14 14 H 1.09004 * 109.47055 * 34.99344 * 13 12 2 15 15 C 1.50706 * 109.46824 * 274.99730 * 13 12 2 16 16 O 1.20821 * 119.99799 * 0.02562 * 15 13 12 17 17 O 1.34227 * 119.99643 * 179.72281 * 15 13 12 18 18 C 1.50697 * 109.47271 * 154.99886 * 13 12 2 19 19 C 1.38222 * 119.98773 * 39.72273 * 18 13 12 20 20 C 1.38359 * 120.01462 * 179.72968 * 19 18 13 21 21 Cl 1.73598 * 120.00769 * 180.27474 * 20 19 18 22 22 C 1.38329 * 119.98382 * 0.52042 * 20 19 18 23 23 C 1.38330 * 119.97370 * 359.75678 * 22 20 19 24 24 Cl 1.73603 * 120.00630 * 180.02562 * 23 22 20 25 25 C 1.38215 * 119.98554 * 220.00070 * 18 13 12 26 26 H 1.08997 * 109.46991 * 63.67410 * 1 2 3 27 27 H 1.08991 * 109.47359 * 183.68115 * 1 2 3 28 28 H 1.09006 * 109.46744 * 303.68142 * 1 2 3 29 29 H 0.96996 * 119.99769 * 180.02562 * 7 6 4 30 30 H 1.00898 * 111.00026 * 38.95095 * 12 2 1 31 31 H 0.96699 * 116.99648 * 180.27862 * 17 15 13 32 32 H 1.08001 * 119.99138 * 0.02562 * 19 18 13 33 33 H 1.07999 * 120.01707 * 179.76857 * 22 20 19 34 34 H 1.07998 * 119.99641 * 359.97438 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6370 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5936 8 14 2.1761 -1.1780 -4.0101 9 1 1.0242 -2.0611 -4.3241 10 1 2.4227 -0.2613 -5.1521 11 1 3.3847 -2.0071 -3.7710 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2227 2.3469 14 1 1.2577 0.9331 2.2906 15 6 3.3912 0.9696 2.3227 16 8 4.1894 0.7612 1.4399 17 8 3.6675 1.8706 3.2784 18 6 1.9787 -0.5675 3.6259 19 6 2.6284 -1.7820 3.7423 20 6 2.5380 -2.5053 4.9183 21 17 3.3599 -4.0272 5.0668 22 6 1.7885 -2.0178 5.9739 23 6 1.1339 -0.8051 5.8547 24 17 0.1936 -0.1922 7.1791 25 6 1.2292 -0.0802 4.6800 26 1 -0.3633 0.4557 -0.9211 27 1 -0.3633 -1.0254 0.0660 28 1 -0.3633 0.5700 0.8552 29 1 1.1315 1.4103 -3.4724 30 1 1.4496 -1.4979 1.4101 31 1 4.5176 2.3274 3.2185 32 1 3.2105 -2.1641 2.9168 33 1 1.7146 -2.5838 6.8907 34 1 0.7185 0.8668 4.5871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:27 Heat of formation + Delta-G solvation = -94.431997 kcal Electronic energy + Delta-G solvation = -21849.790549 eV Core-core repulsion = 18219.552982 eV Total energy + Delta-G solvation = -3630.237567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60287 -40.34234 -38.08579 -37.76922 -37.24293 -36.78802 -34.86599 -32.88935 -31.75645 -30.08690 -27.53439 -27.09501 -23.99655 -23.90269 -22.42481 -21.56349 -19.21481 -18.71330 -18.10095 -17.53026 -17.11083 -16.76420 -16.58603 -16.25114 -15.79618 -15.44944 -15.13755 -14.93476 -14.45339 -14.02905 -13.90333 -13.70352 -13.35291 -13.06236 -13.01720 -12.78953 -12.75469 -12.50700 -12.44135 -12.23508 -12.20684 -12.07874 -11.95734 -11.76493 -11.50341 -11.10207 -10.44206 -9.98009 -9.79806 -9.21094 -8.11270 -6.15858 -0.13355 -0.09708 0.75029 1.21866 1.31896 1.43275 1.44065 1.53878 2.00284 2.33973 2.47461 3.20095 3.24100 3.49795 3.88358 3.91090 4.01586 4.13241 4.31661 4.38333 4.45272 4.71643 4.84191 4.91052 4.96025 5.01884 5.15866 5.33397 5.38507 5.66286 5.68446 5.75141 6.16629 6.53464 6.67152 6.93467 7.12688 7.50584 8.97437 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003885 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.322127 B = 7205.299297 C = 7800.534415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.221 3.779 3 H 0.004 0.996 4 C -0.507 4.507 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.665 5.665 13 C 0.144 3.856 14 H 0.096 0.904 15 C 0.479 3.521 16 O -0.520 6.520 17 O -0.510 6.510 18 C -0.066 4.066 19 C -0.088 4.088 20 C -0.027 4.027 21 Cl -0.053 7.053 22 C -0.090 4.090 23 C -0.025 4.025 24 Cl -0.046 7.046 25 C -0.079 4.079 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.351 0.649 31 H 0.424 0.576 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -3.426 21.157 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.113 3.887 3 H 0.022 0.978 4 C -0.546 4.546 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.299 5.299 13 C 0.033 3.967 14 H 0.114 0.886 15 C 0.320 3.680 16 O -0.407 6.407 17 O -0.323 6.323 18 C -0.067 4.067 19 C -0.108 4.108 20 C -0.054 4.054 21 Cl -0.024 7.024 22 C -0.109 4.109 23 C -0.052 4.052 24 Cl -0.017 7.017 25 C -0.098 4.098 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.285 0.715 32 H 0.155 0.845 33 H 0.182 0.818 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.776 -3.566 20.764 21.082 hybrid contribution -0.006 0.155 -1.058 1.069 sum -0.782 -3.410 19.706 20.014 Atomic orbital electron populations 1.22231 0.99110 0.99819 1.00160 1.18960 0.90051 0.92880 0.86763 0.97790 1.21301 1.34307 1.08016 0.90985 0.92878 1.25627 0.95693 0.95603 1.01732 1.70067 1.46850 1.15205 1.24210 0.85642 0.78639 0.78660 0.79113 1.19557 1.21357 1.19971 1.60253 1.59027 1.08840 1.01756 1.19743 0.92191 0.94773 0.90043 0.88633 1.23563 0.88982 0.77352 0.78130 1.90762 1.49487 1.63850 1.36572 1.84454 1.45306 1.52090 1.50475 1.19203 0.98881 0.94700 0.93929 1.21112 0.98707 0.93852 0.97088 1.20669 0.99468 0.89977 0.95322 1.98391 1.77320 1.28775 1.97924 1.21115 0.95566 0.94877 0.99387 1.20620 0.98652 0.95339 0.90592 1.98394 1.70769 1.87056 1.45484 1.21141 0.97645 1.00600 0.90449 0.93619 0.93505 0.94246 0.93109 0.82736 0.71527 0.84487 0.81762 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.72 9.03 71.98 0.65 -6.07 16 2 C 0.22 10.78 2.08 44.17 0.09 10.88 16 3 H 0.00 0.23 7.58 -2.38 -0.02 0.21 16 4 C -0.51 -28.18 8.76 25.60 0.22 -27.96 16 5 H 0.05 3.00 7.83 -2.91 -0.02 2.97 16 6 C 0.01 0.66 5.17 84.65 0.44 1.09 16 7 N -0.92 -53.78 12.16 21.45 0.26 -53.52 16 8 Si 0.95 44.63 29.55 68.60 2.03 46.66 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.66 -26.33 4.95 -481.02 -2.38 -28.71 16 13 C 0.14 4.67 2.55 43.42 0.11 4.78 16 14 H 0.10 2.95 7.00 -2.38 -0.02 2.93 16 15 C 0.48 16.84 7.35 71.24 0.52 17.37 16 16 O -0.52 -23.46 17.02 21.98 0.37 -23.08 16 17 O -0.51 -13.05 13.35 -51.39 -0.69 -13.74 16 18 C -0.07 -1.68 4.64 -19.87 -0.09 -1.77 16 19 C -0.09 -2.26 8.78 22.29 0.20 -2.06 16 20 C -0.03 -0.59 6.32 22.32 0.14 -0.45 16 21 Cl -0.05 -1.09 28.96 -2.72 -0.08 -1.17 16 22 C -0.09 -1.64 9.62 22.31 0.21 -1.42 16 23 C -0.02 -0.47 6.32 22.32 0.14 -0.33 16 24 Cl -0.05 -0.76 28.96 -2.72 -0.08 -0.84 16 25 C -0.08 -1.65 9.45 22.29 0.21 -1.44 16 26 H 0.04 2.27 6.83 -2.39 -0.02 2.25 16 27 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 28 H 0.04 1.45 7.47 -2.38 -0.02 1.44 16 29 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.35 12.52 7.68 -89.70 -0.69 11.83 16 31 H 0.42 7.34 9.10 -74.06 -0.67 6.66 16 32 H 0.14 3.99 7.71 -2.91 -0.02 3.96 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.16 2.80 8.04 -2.91 -0.02 2.77 16 Total: -1.00 -67.09 330.01 2.09 -65.00 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -0.19 Total: 16.77 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 2.85 Total: -7.38 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -2.12 Total: -82.22 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.31 Total: -36.82 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.16 Total: -2.01 kcal Total: -67.09 2.09 -65.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.433 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds