Wall clock time and date at job start Tue Mar 31 2020 11:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00123 * 2 1 4 4 H 1.48504 * 109.47210 * 239.99925 * 3 2 1 5 5 H 1.48502 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47317 * 120.00103 * 3 2 1 7 7 C 1.37880 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47169 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99715 * 180.02562 * 11 10 9 13 13 H 1.08992 * 109.47459 * 324.99946 * 12 11 10 14 14 C 1.50701 * 109.46922 * 85.00228 * 12 11 10 15 15 O 1.20833 * 120.00106 * 359.97438 * 14 12 11 16 16 O 1.34228 * 120.00108 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47109 * 205.00027 * 12 11 10 18 18 C 1.38222 * 119.98341 * 319.72813 * 17 12 11 19 19 C 1.38363 * 120.00811 * 179.72644 * 18 17 12 20 20 Cl 1.73601 * 120.00940 * 180.27250 * 19 18 17 21 21 C 1.38330 * 119.98641 * 0.52564 * 19 18 17 22 22 C 1.38332 * 119.97418 * 359.74776 * 21 19 18 23 23 Cl 1.73606 * 120.00709 * 180.02562 * 22 21 19 24 24 C 1.38216 * 119.98802 * 140.00066 * 17 12 11 25 25 H 0.97000 * 120.00044 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47239 * 59.99745 * 9 7 2 27 27 H 1.08997 * 109.47344 * 299.99952 * 9 7 2 28 28 H 1.08994 * 109.46755 * 60.00443 * 10 9 7 29 29 H 1.09001 * 109.47015 * 299.99776 * 10 9 7 30 30 H 1.00903 * 111.00454 * 303.95511 * 11 10 9 31 31 H 0.96695 * 117.00593 * 179.97438 * 16 14 12 32 32 H 1.07991 * 119.99776 * 359.97438 * 18 17 12 33 33 H 1.08004 * 120.01496 * 179.77051 * 21 19 18 34 34 H 1.08004 * 119.99098 * 0.02562 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4352 -6.0760 0.0018 13 1 3.3180 -5.8290 -0.5877 14 6 2.8474 -6.3877 1.4174 15 8 2.4158 -5.7263 2.3319 16 8 3.6941 -7.4000 1.6624 17 6 1.7506 -7.2770 -0.5981 18 6 0.4261 -7.5375 -0.3006 19 6 -0.2045 -8.6369 -0.8555 20 17 -1.8700 -8.9600 -0.4874 21 6 0.4938 -9.4815 -1.6996 22 6 1.8209 -9.2234 -1.9925 23 17 2.6979 -10.2825 -3.0523 24 6 2.4489 -8.1209 -1.4411 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.8745 -4.9842 0.7827 31 1 3.9297 -7.5616 2.5862 32 1 -0.1177 -6.8805 0.3620 33 1 0.0030 -10.3419 -2.1301 34 1 3.4852 -7.9195 -1.6694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:17 Heat of formation + Delta-G solvation = -86.448692 kcal Electronic energy + Delta-G solvation = -21204.979256 eV Core-core repulsion = 17575.087871 eV Total energy + Delta-G solvation = -3629.891385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81143 -39.49692 -37.00075 -36.90974 -36.42459 -35.55647 -33.33599 -31.83711 -30.90708 -29.28100 -26.74947 -24.04232 -23.07406 -22.94008 -20.79878 -20.72472 -18.31263 -17.55466 -17.16634 -16.48333 -16.22134 -15.91625 -15.49677 -14.73628 -14.61823 -14.36956 -14.20398 -13.80668 -13.61612 -13.01458 -12.56933 -12.51750 -12.31715 -12.05712 -11.85167 -11.63874 -11.42206 -11.26894 -11.19813 -11.15089 -10.96466 -10.77582 -10.59693 -10.15363 -9.52550 -9.24217 -9.07912 -8.96462 -8.43398 -8.28167 -6.01625 -4.04643 0.73050 0.75794 1.55798 2.02827 2.07615 2.84751 3.23531 3.32774 3.37293 3.39387 4.13002 4.35846 4.51226 4.65394 4.73911 4.85723 4.91556 5.14119 5.17731 5.30334 5.34599 5.73375 5.80858 6.04502 6.10948 6.20274 6.25050 6.37506 6.83389 7.07927 7.47281 7.67099 7.76657 7.81351 8.00599 8.37717 9.01440 9.59114 11.09749 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.003123 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.168895 B = 8963.822342 C = 9408.100630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.654 5.654 12 C 0.136 3.864 13 H 0.129 0.871 14 C 0.451 3.549 15 O -0.501 6.501 16 O -0.515 6.515 17 C -0.041 4.041 18 C -0.077 4.077 19 C -0.024 4.024 20 Cl -0.057 7.057 21 C -0.102 4.102 22 C -0.025 4.025 23 Cl -0.060 7.060 24 C -0.085 4.085 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.017 0.983 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.352 0.648 31 H 0.406 0.594 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 -23.014 -2.145 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.068 4.068 11 N -0.286 5.286 12 C 0.023 3.977 13 H 0.146 0.854 14 C 0.290 3.710 15 O -0.387 6.387 16 O -0.326 6.326 17 C -0.043 4.043 18 C -0.096 4.096 19 C -0.051 4.051 20 Cl -0.028 7.028 21 C -0.121 4.121 22 C -0.052 4.052 23 Cl -0.031 7.031 24 C -0.104 4.104 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.174 0.826 31 H 0.264 0.736 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.236 -22.737 -3.031 23.165 hybrid contribution 0.831 0.791 1.499 1.888 sum 4.067 -21.946 -1.532 22.372 Atomic orbital electron populations 1.69957 1.06027 1.26794 1.50293 1.24988 0.94850 0.99220 0.95192 0.86634 0.79564 0.83058 0.78594 1.20197 1.21243 1.20281 1.21078 0.92925 0.90863 1.51366 0.92766 1.19043 0.93896 0.90060 0.97992 1.22380 0.97563 0.87551 0.99299 1.61129 1.16995 1.01109 1.49373 1.20350 0.97501 0.91283 0.88563 0.85367 1.24922 0.75392 0.76778 0.93905 1.90784 1.52839 1.48739 1.46349 1.84584 1.60796 1.50716 1.36480 1.19216 0.93361 0.94554 0.97139 1.21030 0.94197 0.95204 0.99206 1.20658 0.86850 0.97237 1.00339 1.98394 1.15696 1.95135 1.93536 1.20880 0.92615 1.00293 0.98309 1.20581 0.92558 0.94410 0.97632 1.98385 1.75688 1.64847 1.64169 1.20967 1.00827 0.92631 0.96004 0.92868 0.95447 0.96467 0.95471 0.91694 0.82632 0.73589 0.83881 0.83889 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.70 5.23 -27.88 -0.15 0.56 16 10 C 0.06 1.19 5.32 -3.82 -0.02 1.17 16 11 N -0.65 -10.80 5.56 -109.19 -0.61 -11.40 16 12 C 0.14 1.77 2.70 -70.01 -0.19 1.58 16 13 H 0.13 1.48 7.66 -51.93 -0.40 1.08 16 14 C 0.45 5.97 7.43 36.01 0.27 6.24 16 15 O -0.50 -8.39 16.06 -18.76 -0.30 -8.70 16 16 O -0.52 -5.11 13.34 -39.25 -0.52 -5.64 16 17 C -0.04 -0.48 4.88 -104.63 -0.51 -0.99 16 18 C -0.08 -0.92 9.10 -39.54 -0.36 -1.28 16 19 C -0.02 -0.26 6.32 -39.50 -0.25 -0.51 16 20 Cl -0.06 -0.60 28.96 -51.86 -1.50 -2.10 16 21 C -0.10 -0.99 9.62 -39.51 -0.38 -1.37 16 22 C -0.02 -0.24 6.32 -39.50 -0.25 -0.49 16 23 Cl -0.06 -0.53 28.96 -51.86 -1.50 -2.03 16 24 C -0.09 -0.86 9.45 -39.55 -0.37 -1.24 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.56 7.62 -51.93 -0.40 0.16 16 29 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 30 H 0.35 6.02 7.10 -39.29 -0.28 5.75 16 31 H 0.41 2.46 9.10 45.56 0.41 2.87 16 32 H 0.14 1.76 7.25 -52.49 -0.38 1.38 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 1.20 8.04 -52.48 -0.42 0.78 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -31.69 333.18 -9.01 -40.70 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.69 Total: 3.32 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.62 Total: -9.73 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.13 Total: -37.39 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.82 Total: -14.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -3.00 Total: -4.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.69 -9.01 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.752 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds